MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:31.9 nTPM
GTEx:28.7 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:51.8 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
1870 Female, age 42, unknown 28.0
2828 Female, age 72, unknown 27.9
2019 Male, age 18, unknown 27.5
1827 Male, age 72, unknown 27.3
2666 Male, age 74, left hemisphere 26.1
1833 Male, age 53, unknown 25.7
2586 Male, age 75, left hemisphere 25.6
2411 Female, age 72, unknown 24.7
2219 Male, age 76, both hemispheres 24.6
1830 Male, age 51, unknown 23.9
Dorsal raphe nucleus
nTPM: 27.9
2298 Female, age 72, unknown 31.8
2016 Female, age 72, unknown 27.6
1828 Male, age 53, unknown 27.3
2047 Male, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 25.6
Inferior colliculus
nTPM: 27.5
2097 Female, age 72, unknown 27.9
2849 Male, age 72, unknown 27.9
1848 Female, age 42, unknown 27.4
1890 Male, age 53, unknown 26.9
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Periaquaductal grey, anterior
nTPM: 29.1
1795 Male, age 51, unknown 31.1
2502 Female, age 75, unknown 28.3
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 28.7
2850 Male, age 76, both hemispheres 33.9
1831 Male, age 72, unknown 27.8
1840 Male, age 53, unknown 27.8
2464 Female, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 31.6
2272 Male, age 74, both hemispheres 34.5
2140 Male, age 76, both hemispheres 33.3
2053 Male, age 18, unknown 27.0
Pretectal area
nTPM: 29.3
2273 Male, age 74, both hemispheres 35.7
1817 Female, age 42, unknown 32.1
1816 Male, age 51, unknown 30.6
2007 Male, age 72, unknown 29.5
2224 Female, age 72, unknown 29.5
2825 Male, age 18, unknown 28.4
2667 Female, age 75, unknown 28.2
1815 Male, age 53, unknown 28.0
1944 Female, age 72, unknown 27.8
2316 Male, age 76, right hemisphere 26.5
2407 Male, age 75, both hemispheres 26.0
Red nucleus
nTPM: 27.2
2725 Female, age 75, unknown 31.1
2503 Female, age 72, unknown 29.0
1865 Male, age 51, unknown 27.7
1904 Male, age 53, unknown 27.7
1954 Female, age 42, unknown 27.0
2588 Male, age 74, left hemisphere 26.9
2785 Male, age 18, unknown 26.8
2823 Male, age 76, right hemisphere 26.8
1821 Female, age 72, unknown 26.7
2227 Male, age 72, unknown 26.7
2769 Male, age 72, unknown 26.1
2584 Male, age 75, left hemisphere 24.4
Substantia nigra
nTPM: 27.0
1916 Female, age 42, unknown 31.3
2699 Male, age 18, unknown 30.2
1941 Male, age 53, unknown 28.5
2665 Male, age 74, both hemispheres 28.3
1851 Male, age 51, unknown 27.3
2241 Male, age 72, unknown 27.0
1889 Female, age 72, unknown 26.9
2583 Male, age 75, right hemisphere 25.7
2590 Female, age 75, unknown 25.6
2409 Female, age 72, unknown 19.2
Superior colliculus
nTPM: 26.6
1796 Male, age 53, unknown 28.5
2587 Male, age 74, left hemisphere 28.5
2261 Male, age 18, unknown 28.2
1995 Male, age 72, unknown 27.5
1913 Female, age 42, unknown 26.3
1895 Male, age 76, right hemisphere 26.0
1839 Male, age 51, unknown 25.9
2087 Female, age 72, unknown 25.8
2668 Female, age 75, unknown 25.8
2664 Male, age 75, both hemispheres 23.0
Ventral tegmental area
nTPM: 27.6
2218 Male, age 76, both hemispheres 29.9
2223 Female, age 72, unknown 29.0
1915 Female, age 42, unknown 27.9
2021 Male, age 53, unknown 26.8
1942 Male, age 51, unknown 26.6
2410 Female, age 72, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 49.2
Min nTPM: 20.1
Std nTPM: 4.9
Median nTPM: 28.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 40.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 40.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 36.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 36.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.4
FF:10158-103A5 76 years, female 52.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 28.3
Min nTPM: 23.7
Sample A Female 28.3
Sample B Female 23.8
Sample C Male 24.4
Sample D Male 23.7
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.8
Sample A Female 30.3
Sample B Female 23.8
Sample C Male 26.9
Sample D Male 25.0
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 31.2
Min nTPM: 21.8
Sample B Female 24.2
Sample C Male 31.2
Sample D Male 21.8
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 29.0
Min nTPM: 24.6
Sample A Female 29.0
Sample B Female 24.6
Sample C Male 24.6
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.8
Samples: 4

Max nTPM: 54.4
Min nTPM: 49.9
Sample A Male 50.3
Sample B Male 52.5
Sample C Female 54.4
Sample D Female 49.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
2499 Antisense, RP_040407_02_G06, Mouse strain C57BL/6J (56 days, male) 6.5
2500 Antisense, RP_040407_02_G06, Mouse strain C57BL/6J (56 days, male) 2.5

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