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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX17 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX17 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.6
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
132.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
108.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
96.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
88.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
85.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
84.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
80.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
78.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
74.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
68.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
68.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
68.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
67.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
66.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
65.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
64.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
63.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
63.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
60.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
57.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
56.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
56.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
56.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
53.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
50.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
49.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
48.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
48.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
47.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
46.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
41.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
38.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
0.6
617
Tumor
0.6
1046
Normal
0.5
426
Normal
0.5
1044
Normal
0.5
136
Normal
0.4
1028
Normal
0.4
428
Normal
0.4
572
Normal
0.4
132
Normal
0.4
414
Normal
0.4
451
Tumor
0.4
978
Normal
0.4
568
Normal
0.4
268
Normal
0.4
742
Normal
0.4
186
Normal
0.4
126
Normal
0.3
862
Normal
0.3
332
Normal
0.3
728
Normal
0.3
955
Tumor
0.3
564
Normal
0.3
424
Normal
0.3
943
Tumor
0.3
448
Normal
0.3
864
Normal
0.3
446
Normal
0.3
393
Tumor
0.3
558
Normal
0.3
466
Normal
0.3
124
Normal
0.3
723
Tumor
0.3
148
Normal
0.3
738
Normal
0.3
716
Normal
0.3
1026
Normal
0.3
362
Normal
0.3
188
Normal
0.3
128
Normal
0.3
1042
Normal
0.3
162
Normal
0.3
138
Normal
0.3
574
Normal
0.3
868
Normal
0.3
1032
Normal
0.3
1027
Tumor
0.3
146
Normal
0.3
666
Normal
0.3
956
Normal
0.3
746
Normal
0.3
258
Normal
0.3
984
Normal
0.3
866
Normal
0.3
756
Normal
0.3
616
Normal
0.3
272
Normal
0.3
452
Normal
0.3
816
Normal
0.3
786
Normal
0.3
142
Normal
0.2
686
Normal
0.2
628
Normal
0.2
952
Normal
0.2
662
Normal
0.2
1016
Normal
0.2
1045
Tumor
0.2
278
Normal
0.2
456
Normal
0.2
262
Normal
0.2
286
Normal
0.2
314
Normal
0.2
444
Normal
0.2
125
Tumor
0.2
914
Normal
0.2
518
Normal
0.2
778
Normal
0.2
413
Tumor
0.2
354
Normal
0.2
392
Normal
0.2
436
Normal
0.2
824
Normal
0.2
981
Tumor
0.2
376
Normal
0.2
113
Tumor
0.2
966
Normal
0.2
698
Normal
0.2
514
Normal
0.2
114
Normal
0.2
261
Tumor
0.2
968
Normal
0.2
396
Normal
0.2
358
Normal
0.2
356
Normal
0.2
145
Tumor
0.2
1021
Tumor
0.2
1014
Normal
0.2
196
Normal
0.2
311
Tumor
0.2
918
Normal
0.2
911
Tumor
0.2
284
Normal
0.2
422
Normal
0.2
464
Normal
0.2
494
Normal
0.2
435
Tumor
0.2
222
Normal
0.2
232
Normal
0.2
468
Normal
0.2
364
Normal
0.2
874
Normal
0.2
416
Normal
0.2
665
Tumor
0.2
785
Tumor
0.2
958
Normal
0.2
218
Normal
0.2
1015
Tumor
0.2
432
Normal
0.2
312
Normal
0.2
1022
Normal
0.2
434
Normal
0.2
664
Normal
0.2
214
Normal
0.2
528
Normal
0.2
388
Normal
0.2
352
Normal
0.2
818
Normal
0.2
212
Normal
0.2
852
Normal
0.2
618
Normal
0.2
172
Normal
0.2
187
Tumor
0.2
982
Normal
0.1
111
Normal
0.1
412
Normal
0.1
648
Normal
0.1
394
Normal
0.1
916
Normal
0.1
938
Normal
0.1
224
Normal
0.1
858
Normal
0.1
415
Tumor
0.1
944
Normal
0.1
386
Normal
0.1
696
Normal
0.1
368
Normal
0.1
636
Normal
0.1
964
Normal
0.1
924
Normal
0.1
884
Normal
0.1
912
Normal
0.1
462
Normal
0.1
195
Tumor
0.1
954
Normal
0.1
341
Tumor
0.1
492
Normal
0.1
672
Normal
0.1
727
Tumor
0.1
192
Normal
0.1
867
Tumor
0.1
298
Normal
0.1
524
Normal
0.1
526
Normal
0.1
926
Normal
0.1
744
Normal
0.1
536
Normal
0.1
395
Tumor
0.1
384
Normal
0.1
714
Normal
0.1
228
Normal
0.1
366
Normal
0.1
231
Tumor
0.1
498
Normal
0.1
477
Tumor
0.1
365
Tumor
0.1
922
Normal
0.1
642
Normal
0.1
391
Tumor
0.1
484
Normal
0.1
661
Tumor
0.1
722
Normal
0.1
467
Tumor
0.1
715
Tumor
0.0
976
Normal
0.0
472
Normal
0.0
127
Tumor
0.0
223
Tumor
0.0
488
Normal
0.0
1041
Tumor
0.0
465
Tumor
0.0
478
Normal
0.0
953
Tumor
0.0
363
Tumor
0.0
137
Tumor
0.0
191
Tumor
0.0
185
Tumor
0.0
721
Tumor
0.0
615
Tumor
0.0
421
Tumor
0.0
344
Normal
0.0
983
Tumor
0.0
481
Tumor
0.0
474
Normal
0.0
517
Tumor
0.0
685
Tumor
0.0
515
Tumor
0.0
433
Tumor
0.0
741
Tumor
0.0
328
Normal
0.0
977
Tumor
0.0
882
Normal
0.0
573
Tumor
0.0
554
Normal
0.0
913
Tumor
0.0
482
Normal
0.0
297
Tumor
0.0
516
Normal
0.0
327
Tumor
0.0
563
Tumor
0.0
353
Tumor
0.0
513
Tumor
0.0
857
Tumor
0.0
967
Tumor
0.0
538
Normal
0.0
814
Normal
0.0
257
Tumor
0.0
878
Normal
0.0
423
Tumor
0.0
861
Tumor
0.0
641
Tumor
0.0
213
Tumor
0.0
283
Tumor
0.0
447
Tumor
0.0
285
Tumor
-0.1
147
Tumor
-0.1
463
Tumor
-0.1
123
Tumor
-0.1
343
Tumor
-0.1
493
Tumor
-0.1
1031
Tumor
-0.1
925
Tumor
-0.1
777
Tumor
-0.1
915
Tumor
-0.1
445
Tumor
-0.1
713
Tumor
-0.1
873
Tumor
-0.1
823
Tumor
-0.1
627
Tumor
-0.1
883
Tumor
-0.1
342
Normal
-0.1
383
Tumor
-0.1
425
Tumor
-0.1
455
Tumor
-0.1
917
Tumor
-0.1
937
Tumor
-0.1
546
Normal
-0.1
443
Tumor
-0.1
813
Tumor
-0.1
755
Tumor
-0.1
534
Normal
-0.2
217
Tumor
-0.2
461
Tumor
-0.2
473
Tumor
-0.2
161
Tumor
-0.2
112
Tumor
-0.2
557
Tumor
-0.2
135
Tumor
-0.2
491
Tumor
-0.2
951
Tumor
-0.2
211
Tumor
-0.2
141
Tumor
-0.2
851
Tumor
-0.2
525
Tumor
-0.2
1043
Tumor
-0.2
817
Tumor
-0.2
737
Tumor
-0.2
553
Tumor
-0.2
267
Tumor
-0.2
387
Tumor
-0.3
1013
Tumor
-0.3
361
Tumor
-0.3
567
Tumor
-0.3
277
Tumor
-0.3
1025
Tumor
-0.3
863
Tumor
-0.3
963
Tumor
-0.3
533
Tumor
-0.3
497
Tumor
-0.3
815
Tumor
-0.3
357
Tumor
-0.3
171
Tumor
-0.3
965
Tumor
-0.3
271
Tumor
-0.3
527
Tumor
-0.3
975
Tumor
-0.3
427
Tumor
-0.3
923
Tumor
-0.3
523
Tumor
-0.3
131
Tumor
-0.4
483
Tumor
-0.4
697
Tumor
-0.4
571
Tumor
-0.4
431
Tumor
-0.4
881
Tumor
-0.4
471
Tumor
-0.4
351
Tumor
-0.4
385
Tumor
-0.4
745
Tumor
-0.4
355
Tumor
-0.4
663
Tumor
-0.4
367
Tumor
-0.4
487
Tumor
-0.4
671
Tumor
-0.5
331
Tumor
-0.5
313
Tumor
-0.5
535
Tumor
-0.5
865
Tumor
-0.5
743
Tumor
-0.5
695
Tumor
-0.5
647
Tumor
-0.6
921
Tumor
-0.6
375
Tumor
-0.6
957
Tumor
-0.6
221
Tumor
-0.6
537
Tumor
-0.6
411
Tumor
-0.6
877
Tumor
-0.7
635
Tumor
-0.7
545
Tumor
-0.8
227
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
