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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRBP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
181.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
169.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
153.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
142.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
135.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
134.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
120.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
118.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
115.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
113.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
107.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
104.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
102.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
96.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
94.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
94.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
89.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
86.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
86.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
85.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
83.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
83.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
83.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
80.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
79.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
77.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
76.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
75.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
74.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
74.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
74.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
74.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
74.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
70.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
68.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
68.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
67.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
66.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
65.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
65.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
65.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
65.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
64.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
64.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
63.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
63.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
63.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
62.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
62.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
61.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
61.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
59.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
58.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
57.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
56.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
56.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
56.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
55.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
55.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
55.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
54.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
53.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
52.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
52.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
51.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
51.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
50.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
49.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
45.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
43.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
41.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
38.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
34.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
32.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRBP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.1
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
152.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
131.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
111.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
108.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
104.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
101.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
98.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
98.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
96.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
95.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
90.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
84.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
84.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
82.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
82.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
81.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
80.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
80.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
79.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
78.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
78.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
78.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
76.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
75.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
74.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
74.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
74.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
72.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
72.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
72.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
71.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
71.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
68.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
68.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
67.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
66.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
66.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
66.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
64.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
63.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
63.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
62.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
62.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
62.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
61.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
60.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
60.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
59.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
59.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
59.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
59.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
59.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
59.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
58.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
58.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
57.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
52.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
52.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
50.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
50.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
50.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
49.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
48.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
48.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
44.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
42.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
38.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
1.2
283
Tumor
1.1
661
Tumor
0.9
983
Tumor
0.8
967
Tumor
0.8
815
Tumor
0.8
724
Normal
0.8
817
Tumor
0.7
343
Tumor
0.7
743
Tumor
0.6
965
Tumor
0.6
285
Tumor
0.6
351
Tumor
0.6
917
Tumor
0.6
363
Tumor
0.6
123
Tumor
0.5
491
Tumor
0.5
131
Tumor
0.5
493
Tumor
0.5
444
Normal
0.5
126
Normal
0.5
445
Tumor
0.5
375
Tumor
0.5
671
Tumor
0.5
943
Tumor
0.5
545
Tumor
0.5
367
Tumor
0.4
715
Tumor
0.4
211
Tumor
0.4
665
Tumor
0.4
192
Normal
0.4
447
Tumor
0.4
497
Tumor
0.4
385
Tumor
0.4
851
Tumor
0.4
727
Tumor
0.4
535
Tumor
0.4
434
Normal
0.4
391
Tumor
0.4
171
Tumor
0.4
221
Tumor
0.4
1015
Tumor
0.4
525
Tumor
0.3
863
Tumor
0.3
331
Tumor
0.3
877
Tumor
0.3
271
Tumor
0.3
975
Tumor
0.3
124
Normal
0.3
977
Tumor
0.3
573
Tumor
0.3
861
Tumor
0.3
1031
Tumor
0.3
492
Normal
0.3
536
Normal
0.3
451
Tumor
0.3
1043
Tumor
0.3
213
Tumor
0.3
368
Normal
0.3
384
Normal
0.3
112
Tumor
0.2
823
Tumor
0.2
553
Tumor
0.2
813
Tumor
0.2
814
Normal
0.2
383
Tumor
0.2
865
Tumor
0.2
471
Tumor
0.2
366
Normal
0.2
1021
Tumor
0.2
268
Normal
0.2
387
Tumor
0.2
463
Tumor
0.2
393
Tumor
0.2
527
Tumor
0.2
455
Tumor
0.2
881
Tumor
0.2
146
Normal
0.2
413
Tumor
0.2
137
Tumor
0.2
567
Tumor
0.2
386
Normal
0.2
498
Normal
0.2
741
Tumor
0.2
217
Tumor
0.2
537
Tumor
0.2
433
Tumor
0.2
113
Tumor
0.2
951
Tumor
0.2
141
Tumor
0.1
478
Normal
0.1
352
Normal
0.1
135
Tumor
0.1
362
Normal
0.1
672
Normal
0.1
342
Normal
0.1
188
Normal
0.1
641
Tumor
0.1
114
Normal
0.1
231
Tumor
0.1
915
Tumor
0.1
737
Tumor
0.1
344
Normal
0.1
713
Tumor
0.1
138
Normal
0.1
395
Tumor
0.1
517
Tumor
0.1
136
Normal
0.1
695
Tumor
0.1
311
Tumor
0.1
127
Tumor
0.1
721
Tumor
0.1
224
Normal
0.1
852
Normal
0.1
647
Tumor
0.1
1044
Normal
0.1
662
Normal
0.1
957
Tumor
0.1
1025
Tumor
0.1
312
Normal
0.1
132
Normal
0.1
396
Normal
0.0
111
Normal
0.0
916
Normal
0.0
185
Tumor
0.0
425
Tumor
0.0
952
Normal
0.0
461
Tumor
0.0
978
Normal
0.0
913
Tumor
0.0
195
Tumor
0.0
666
Normal
0.0
297
Tumor
0.0
446
Normal
0.0
816
Normal
0.0
617
Tumor
0.0
262
Normal
0.0
857
Tumor
0.0
664
Normal
0.0
921
Tumor
0.0
563
Tumor
0.0
966
Normal
0.0
258
Normal
0.0
744
Normal
0.0
261
Tumor
0.0
223
Tumor
0.0
191
Tumor
0.0
415
Tumor
0.0
755
Tumor
0.0
272
Normal
0.0
963
Tumor
0.0
696
Normal
0.0
187
Tumor
0.0
421
Tumor
0.0
365
Tumor
0.0
716
Normal
0.0
354
Normal
0.0
431
Tumor
-0.1
432
Normal
-0.1
686
Normal
-0.1
284
Normal
-0.1
452
Normal
-0.1
468
Normal
-0.1
388
Normal
-0.1
353
Tumor
-0.1
884
Normal
-0.1
394
Normal
-0.1
142
Normal
-0.1
663
Tumor
-0.1
392
Normal
-0.1
467
Tumor
-0.1
128
Normal
-0.1
785
Tumor
-0.1
1046
Normal
-0.1
376
Normal
-0.1
227
Tumor
-0.1
298
Normal
-0.1
984
Normal
-0.1
456
Normal
-0.1
956
Normal
-0.1
1016
Normal
-0.1
874
Normal
-0.1
422
Normal
-0.1
524
Normal
-0.1
914
Normal
-0.1
145
Tumor
-0.1
714
Normal
-0.1
918
Normal
-0.1
212
Normal
-0.1
738
Normal
-0.1
742
Normal
-0.1
955
Tumor
-0.1
538
Normal
-0.1
218
Normal
-0.1
364
Normal
-0.1
483
Tumor
-0.1
685
Tumor
-0.1
976
Normal
-0.1
477
Tumor
-0.1
278
Normal
-0.1
424
Normal
-0.1
481
Tumor
-0.1
627
Tumor
-0.1
778
Normal
-0.1
361
Tumor
-0.1
1028
Normal
-0.2
1045
Tumor
-0.2
494
Normal
-0.2
148
Normal
-0.2
786
Normal
-0.2
416
Normal
-0.2
313
Tumor
-0.2
473
Tumor
-0.2
558
Normal
-0.2
355
Tumor
-0.2
196
Normal
-0.2
867
Tumor
-0.2
277
Tumor
-0.2
1013
Tumor
-0.2
428
Normal
-0.2
172
Normal
-0.2
697
Tumor
-0.2
722
Normal
-0.2
474
Normal
-0.2
414
Normal
-0.2
162
Normal
-0.2
923
Tumor
-0.2
341
Tumor
-0.2
466
Normal
-0.2
1041
Tumor
-0.2
938
Normal
-0.2
981
Tumor
-0.2
464
Normal
-0.2
922
Normal
-0.2
745
Tumor
-0.2
868
Normal
-0.2
878
Normal
-0.2
944
Normal
-0.2
484
Normal
-0.2
866
Normal
-0.2
982
Normal
-0.2
864
Normal
-0.2
482
Normal
-0.2
924
Normal
-0.2
862
Normal
-0.2
161
Tumor
-0.2
358
Normal
-0.2
572
Normal
-0.2
472
Normal
-0.2
232
Normal
-0.2
186
Normal
-0.2
574
Normal
-0.3
883
Tumor
-0.3
488
Normal
-0.3
257
Tumor
-0.3
448
Normal
-0.3
423
Tumor
-0.3
332
Normal
-0.3
427
Tumor
-0.3
523
Tumor
-0.3
911
Tumor
-0.3
968
Normal
-0.3
314
Normal
-0.3
723
Tumor
-0.3
328
Normal
-0.3
858
Normal
-0.3
756
Normal
-0.3
648
Normal
-0.3
728
Normal
-0.3
628
Normal
-0.3
777
Tumor
-0.3
515
Tumor
-0.3
926
Normal
-0.3
426
Normal
-0.3
1022
Normal
-0.3
222
Normal
-0.3
958
Normal
-0.3
912
Normal
-0.3
412
Normal
-0.3
1032
Normal
-0.3
568
Normal
-0.3
516
Normal
-0.3
818
Normal
-0.3
286
Normal
-0.3
746
Normal
-0.3
873
Tumor
-0.3
1014
Normal
-0.3
214
Normal
-0.3
698
Normal
-0.3
1042
Normal
-0.3
925
Tumor
-0.3
435
Tumor
-0.3
528
Normal
-0.3
937
Tumor
-0.4
953
Tumor
-0.4
635
Tumor
-0.4
465
Tumor
-0.4
954
Normal
-0.4
882
Normal
-0.4
356
Normal
-0.4
443
Tumor
-0.4
824
Normal
-0.4
557
Tumor
-0.4
462
Normal
-0.4
327
Tumor
-0.4
533
Tumor
-0.4
1026
Normal
-0.4
228
Normal
-0.4
546
Normal
-0.4
518
Normal
-0.4
147
Tumor
-0.4
554
Normal
-0.5
534
Normal
-0.5
642
Normal
-0.5
964
Normal
-0.5
436
Normal
-0.5
514
Normal
-0.5
564
Normal
-0.5
487
Tumor
-0.5
526
Normal
-0.5
616
Normal
-0.5
618
Normal
-0.6
636
Normal
-0.6
267
Tumor
-0.6
357
Tumor
-0.6
615
Tumor
-0.7
571
Tumor
-0.7
513
Tumor
-0.7
1027
Tumor
-0.7
411
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
