BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:1.0 nTPM
HPA Brain:2.6 nTPM
GTEx:1.0 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:0.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0100200300400500600nCPM

CAUDATE - Antibody stainingi
Antibody HPA007191
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 2.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
2481 Female, age 94, left hemisphere 2.1
1781 Male, age 74, unknown 1.7
1857 Female, age 85, left hemisphere 1.6
2846 Female, age 79, unknown 1.5
2290 Female, age 72, unknown 1.4
1854 Male, age 80, left hemisphere 1.1
2289 Male, age 61, right hemisphere 0.9
2288 Male, age 75, left hemisphere 0.5
Globus pallidus, externus
nTPM: 2.1
2395 Male, age 75, both hemispheres 3.6
2772 Female, age 79, unknown 2.5
1996 Male, age 80, right hemisphere 2.3
2567 Female, age 72, unknown 1.3
2646 Male, age 61, right hemisphere 1.0
Globus pallidus, internus
nTPM: 1.8
2037 Male, age 80, right hemisphere 2.3
2111 Female, age 85, right hemisphere 2.2
2566 Female, age 72, unknown 2.2
1818 Male, age 74, unknown 2.0
2778 Female, age 91, both hemispheres 1.9
2483 Female, age 94, right hemisphere 1.6
2287 Male, age 75, right hemisphere 0.7
Nucleus accumbens
nTPM: 1.3
2698 Female, age 72, unknown 2.2
2732 Male, age 80, right hemisphere 2.0
1806 Female, age 85, left hemisphere 1.6
1783 Male, age 74, unknown 1.0
1856 Female, age 91, right hemisphere 0.9
2391 Female, age 94, left hemisphere 0.9
2824 Male, age 61, right hemisphere 0.9
2286 Male, age 75, left hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 2.6
2821 Male, age 75, both hemispheres 6.4
2393 Male, age 80, right hemisphere 1.9
2484 Female, age 94, left hemisphere 1.3
2569 Male, age 61, both hemispheres 0.9
Nucleus of the diagonal band
nTPM: 1.1
1812 Female, age 91, both hemispheres 2.3
1979 Male, age 74, unknown 0.9
2029 Male, age 61, right hemisphere 0.8
2775 Male, age 80, right hemisphere 0.8
2195 Female, age 85, both hemispheres 0.4
Putamen
nTPM: 1.2
2466 Female, age 79, unknown 1.9
2482 Female, age 94, left hemisphere 1.8
2489 Female, age 72, unknown 1.4
1937 Female, age 91, right hemisphere 1.3
2647 Male, age 75, left hemisphere 1.1
1829 Male, age 74, unknown 0.6
1838 Male, age 80, right hemisphere 0.6
Septal nuclei
nTPM: 1.3
2009 Female, age 91, both hemispheres 1.8
2031 Female, age 72, unknown 1.7
2199 Male, age 80, right hemisphere 1.7
2394 Male, age 61, left hemisphere 1.3
2629 Female, age 94, right hemisphere 1.0
1960 Male, age 74, unknown 0.8
2059 Female, age 85, both hemispheres 0.6
Stria terminalis, bed nucleus
nTPM: 0.9
1974 Female, age 91, both hemispheres 1.0
2201 Male, age 74, unknown 0.9
2486 Female, age 94, both hemispheres 0.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 1.0
GTEx sample id Sample description nTPM
0.50.71.10.02.00.00.51.01.52.02.53.03.54.04.55.05.5
Brain - Caudate (basal ganglia)
Average nTPM: 0.9
Samples: 300

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 0.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 5.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 4.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2.5
Show allShow less
0.40.61.00.11.90.00.51.01.52.02.53.03.54.04.5
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.7
Samples: 285

Max nTPM: 4.8
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 0.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 4.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 4.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 3.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 2.3
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 2.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 2.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 2.2
GTEX-11EI6-0011-R6a-SM-GJ3RN 60-69 years, male 2.0
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 1.9
GTEX-ZZPT-0011-R6a-SM-GPRX6 50-59 years, male 1.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.0
Samples: 254

Max nTPM: 8.9
Min nTPM: 0.1
Std nTPM: 0.9
Median nTPM: 0.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 8.9
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 6.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 3.6
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 3.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 3.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 3.1
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 2.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 2.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 2.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.1
FF:10164-103B2 76 years, female 4.1
Nucleus accumbens
Scaled Tags Per Million: 3.1
FF:10037-101F1 23-56 years, mixed 3.1
Putamen
Scaled Tags Per Million: 1.0
FF:10176-103C5 60 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10161-103A8 76 years, female 10.0
FF:10175-103C4 60 years, female 4.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 0.7
Pig sample Sample description nTPM
0.30.40.60.30.80.00.10.20.30.40.50.60.70.8
 		Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.8
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.5
0.40.50.50.30.60.000.050.100.150.200.250.300.350.400.450.500.550.60
 		Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.3
Sample C Male 0.4
Sample D Male 0.6
0.60.60.70.50.60.00.10.20.30.40.50.60.70.80.91.01.1
 		Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 1.1
Sample D Male 0.6
0.40.50.50.20.60.000.050.100.150.200.250.300.350.400.450.500.550.60
 		Ventral pallidum
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Female 0.4
Sample B Female 0.5
Sample C Male 0.2
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 0.4
Mouse sample Sample description nTPM
0.10.20.20.00.20.000.020.040.060.080.100.120.140.160.180.20
 		Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.0
Sample D Female 0.1
0.30.40.60.10.70.000.050.100.150.200.250.300.350.400.450.500.550.600.650.70
 		Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.7
Sample C Female 0.3
Sample D Female 0.5
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org