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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF3B6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
255.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
227.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
226.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
200.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
192.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
191.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
189.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
189.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
188.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
182.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
179.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
178.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
176.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
174.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
166.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
166.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
160.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
157.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
156.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
150.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
148.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
147.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
146.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
144.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
144.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
143.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
143.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
143.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
141.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
141.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
140.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
135.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
135.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
133.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
132.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
131.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
128.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
123.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
122.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
122.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
121.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
121.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
120.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
120.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
120.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
119.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
119.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
117.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
117.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
116.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
115.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
115.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
115.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
114.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
113.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
113.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
112.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
112.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
111.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
111.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
110.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
110.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
109.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
109.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
107.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
106.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
106.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
106.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
106.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
105.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
104.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
104.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
104.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
104.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
104.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
104.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
104.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
104.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
103.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
102.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
102.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
102.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
102.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
102.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
101.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
101.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
100.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
100.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
99.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
99.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
99.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
99.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
98.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
97.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
97.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
97.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
96.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
96.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
96.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
96.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
94.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
94.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
93.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
93.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
93.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
93.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
92.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
92.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
92.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
92.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
92.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
92.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
92.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
91.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
91.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
91.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
91.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
91.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
91.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
90.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
90.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
90.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
90.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
89.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
89.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
89.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
89.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
89.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
88.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
88.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
88.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
88.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
88.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
88.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
87.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
87.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
87.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
86.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
86.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
86.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
85.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
85.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
84.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
84.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
84.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
84.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
84.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
84.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
84.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
84.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
84.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
83.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
83.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
82.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
82.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
82.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
82.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
82.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
81.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
81.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
81.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
81.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
80.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
80.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
80.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
80.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
80.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
80.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
79.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
79.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
78.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
78.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
78.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
78.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
78.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
77.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
77.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
77.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
76.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
76.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
76.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
75.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
75.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
75.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
75.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
75.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
75.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
74.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
74.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
73.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
73.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
73.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
73.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
73.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
73.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
73.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
72.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
72.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
72.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
72.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
72.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
72.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
72.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
72.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
72.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
71.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
71.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
71.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
71.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
70.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
70.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
70.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
70.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
70.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
69.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
69.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
69.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
69.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
69.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
69.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
68.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
68.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
68.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
68.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
68.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
67.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
67.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
66.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
66.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
66.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
66.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
66.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
66.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
65.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
65.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
64.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
64.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
64.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
63.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
63.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
63.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
63.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
62.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
61.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
61.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
60.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
60.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
60.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
60.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
60.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
60.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
60.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
59.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
59.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
59.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
59.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
59.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
59.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
58.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
58.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
58.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
58.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
57.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
57.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
57.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
57.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
57.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
57.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
56.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
56.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
56.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
56.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
56.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
55.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
55.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
54.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
53.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
53.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
52.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
48.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
45.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
41.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
38.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
951
Tumor
0.9
983
Tumor
0.9
131
Tumor
0.8
535
Tumor
0.7
965
Tumor
0.7
497
Tumor
0.7
661
Tumor
0.7
815
Tumor
0.7
425
Tumor
0.7
367
Tumor
0.7
977
Tumor
0.6
1031
Tumor
0.6
463
Tumor
0.6
112
Tumor
0.6
967
Tumor
0.6
355
Tumor
0.6
537
Tumor
0.6
351
Tumor
0.6
567
Tumor
0.6
523
Tumor
0.6
737
Tumor
0.6
943
Tumor
0.6
817
Tumor
0.6
877
Tumor
0.6
1021
Tumor
0.5
724
Normal
0.5
1013
Tumor
0.5
473
Tumor
0.5
123
Tumor
0.5
413
Tumor
0.5
527
Tumor
0.5
285
Tumor
0.5
727
Tumor
0.5
313
Tumor
0.5
447
Tumor
0.5
331
Tumor
0.5
923
Tumor
0.5
533
Tumor
0.5
697
Tumor
0.5
385
Tumor
0.5
443
Tumor
0.4
411
Tumor
0.4
517
Tumor
0.4
487
Tumor
0.4
227
Tumor
0.4
975
Tumor
0.4
431
Tumor
0.4
427
Tumor
0.4
1025
Tumor
0.4
921
Tumor
0.4
963
Tumor
0.4
277
Tumor
0.3
297
Tumor
0.3
357
Tumor
0.3
271
Tumor
0.3
125
Tumor
0.3
211
Tumor
0.3
813
Tumor
0.3
883
Tumor
0.3
477
Tumor
0.3
647
Tumor
0.3
363
Tumor
0.3
957
Tumor
0.3
685
Tumor
0.3
937
Tumor
0.3
545
Tumor
0.3
1041
Tumor
0.3
953
Tumor
0.3
665
Tumor
0.3
1043
Tumor
0.3
881
Tumor
0.3
671
Tumor
0.3
515
Tumor
0.3
493
Tumor
0.2
1015
Tumor
0.2
483
Tumor
0.2
873
Tumor
0.2
471
Tumor
0.2
823
Tumor
0.2
491
Tumor
0.2
161
Tumor
0.2
641
Tumor
0.2
938
Normal
0.2
383
Tumor
0.2
135
Tumor
0.2
861
Tumor
0.2
954
Normal
0.2
455
Tumor
0.2
571
Tumor
0.2
553
Tumor
0.2
814
Normal
0.2
857
Tumor
0.2
917
Tumor
0.2
663
Tumor
0.2
865
Tumor
0.2
393
Tumor
0.2
785
Tumor
0.2
127
Tumor
0.2
525
Tumor
0.2
415
Tumor
0.2
695
Tumor
0.2
343
Tumor
0.2
283
Tumor
0.2
387
Tumor
0.2
341
Tumor
0.2
435
Tumor
0.2
913
Tumor
0.2
955
Tumor
0.1
777
Tumor
0.1
492
Normal
0.1
635
Tumor
0.1
113
Tumor
0.1
1045
Tumor
0.1
863
Tumor
0.1
536
Normal
0.1
451
Tumor
0.1
1027
Tumor
0.1
925
Tumor
0.1
944
Normal
0.1
461
Tumor
0.1
867
Tumor
0.1
221
Tumor
0.1
952
Normal
0.1
478
Normal
0.1
573
Tumor
0.1
185
Tumor
0.1
467
Tumor
0.1
755
Tumor
0.1
171
Tumor
0.1
715
Tumor
0.1
524
Normal
0.1
964
Normal
0.1
851
Tumor
0.1
391
Tumor
0.1
141
Tumor
0.0
213
Tumor
0.0
433
Tumor
0.0
984
Normal
0.0
981
Tumor
0.0
741
Tumor
0.0
126
Normal
0.0
911
Tumor
0.0
878
Normal
0.0
1014
Normal
0.0
852
Normal
0.0
365
Tumor
0.0
617
Tumor
0.0
311
Tumor
0.0
958
Normal
0.0
395
Tumor
0.0
563
Tumor
0.0
627
Tumor
0.0
498
Normal
0.0
513
Tumor
0.0
534
Normal
0.0
488
Normal
0.0
968
Normal
0.0
187
Tumor
0.0
882
Normal
0.0
137
Tumor
0.0
423
Tumor
0.0
916
Normal
0.0
375
Tumor
0.0
912
Normal
0.0
445
Tumor
0.0
978
Normal
-0.1
868
Normal
-0.1
465
Tumor
-0.1
615
Tumor
-0.1
557
Tumor
-0.1
231
Tumor
-0.1
721
Tumor
-0.1
966
Normal
-0.1
824
Normal
-0.1
862
Normal
-0.1
261
Tumor
-0.1
915
Tumor
-0.1
866
Normal
-0.1
1028
Normal
-0.1
538
Normal
-0.1
191
Tumor
-0.1
1032
Normal
-0.1
713
Tumor
-0.1
864
Normal
-0.1
494
Normal
-0.1
481
Tumor
-0.1
353
Tumor
-0.1
516
Normal
-0.1
223
Tumor
-0.1
448
Normal
-0.1
818
Normal
-0.1
956
Normal
-0.1
745
Tumor
-0.1
922
Normal
-0.1
924
Normal
-0.1
421
Tumor
-0.1
145
Tumor
-0.1
267
Tumor
-0.1
484
Normal
-0.1
472
Normal
-0.1
686
Normal
-0.1
884
Normal
-0.1
212
Normal
-0.1
268
Normal
-0.1
976
Normal
-0.1
874
Normal
-0.1
546
Normal
-0.1
858
Normal
-0.1
124
Normal
-0.1
412
Normal
-0.1
328
Normal
-0.1
526
Normal
-0.1
518
Normal
-0.2
1022
Normal
-0.2
926
Normal
-0.2
482
Normal
-0.2
327
Tumor
-0.2
514
Normal
-0.2
918
Normal
-0.2
1026
Normal
-0.2
1042
Normal
-0.2
361
Tumor
-0.2
1044
Normal
-0.2
146
Normal
-0.2
816
Normal
-0.2
1046
Normal
-0.2
696
Normal
-0.2
558
Normal
-0.2
147
Tumor
-0.2
356
Normal
-0.2
464
Normal
-0.2
416
Normal
-0.2
528
Normal
-0.2
114
Normal
-0.2
364
Normal
-0.2
257
Tumor
-0.2
462
Normal
-0.2
217
Tumor
-0.3
746
Normal
-0.3
284
Normal
-0.3
352
Normal
-0.3
572
Normal
-0.3
384
Normal
-0.3
195
Tumor
-0.3
716
Normal
-0.3
648
Normal
-0.3
738
Normal
-0.3
286
Normal
-0.3
982
Normal
-0.3
142
Normal
-0.3
392
Normal
-0.3
232
Normal
-0.3
723
Tumor
-0.3
474
Normal
-0.3
434
Normal
-0.3
344
Normal
-0.3
362
Normal
-0.3
778
Normal
-0.3
554
Normal
-0.3
574
Normal
-0.3
466
Normal
-0.3
258
Normal
-0.3
756
Normal
-0.3
192
Normal
-0.3
312
Normal
-0.3
224
Normal
-0.3
138
Normal
-0.3
444
Normal
-0.3
664
Normal
-0.3
298
Normal
-0.3
386
Normal
-0.3
228
Normal
-0.3
136
Normal
-0.3
188
Normal
-0.3
272
Normal
-0.3
728
Normal
-0.3
628
Normal
-0.3
456
Normal
-0.3
388
Normal
-0.3
786
Normal
-0.3
128
Normal
-0.3
394
Normal
-0.3
662
Normal
-0.4
368
Normal
-0.4
744
Normal
-0.4
564
Normal
-0.4
742
Normal
-0.4
452
Normal
-0.4
132
Normal
-0.4
714
Normal
-0.4
432
Normal
-0.4
111
Normal
-0.4
618
Normal
-0.4
376
Normal
-0.4
196
Normal
-0.4
354
Normal
-0.4
366
Normal
-0.4
568
Normal
-0.4
186
Normal
-0.4
468
Normal
-0.4
278
Normal
-0.4
914
Normal
-0.4
162
Normal
-0.4
672
Normal
-0.4
262
Normal
-0.4
616
Normal
-0.4
148
Normal
-0.4
332
Normal
-0.4
172
Normal
-0.4
314
Normal
-0.4
424
Normal
-0.4
426
Normal
-0.4
698
Normal
-0.4
218
Normal
-0.5
396
Normal
-0.5
1016
Normal
-0.5
342
Normal
-0.5
422
Normal
-0.5
666
Normal
-0.5
722
Normal
-0.5
414
Normal
-0.5
636
Normal
-0.5
436
Normal
-0.5
214
Normal
-0.5
358
Normal
-0.5
446
Normal
-0.6
642
Normal
-0.6
222
Normal
-0.6
428
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
