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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAHD2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
115.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
110.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
97.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
89.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
85.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
76.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
74.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
73.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
72.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
60.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
60.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
59.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
58.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
58.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
58.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
52.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
48.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
47.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
47.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
47.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
46.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
44.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
43.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
42.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
41.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
40.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
35.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAHD2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
65.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
50.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.1
742
Normal
0.9
342
Normal
0.9
571
Tumor
0.9
738
Normal
0.9
746
Normal
0.9
698
Normal
0.8
436
Normal
0.8
723
Tumor
0.8
728
Normal
0.8
952
Normal
0.8
462
Normal
0.8
882
Normal
0.8
868
Normal
0.8
964
Normal
0.8
484
Normal
0.7
618
Normal
0.7
546
Normal
0.7
714
Normal
0.7
924
Normal
0.7
472
Normal
0.7
534
Normal
0.7
426
Normal
0.7
518
Normal
0.7
756
Normal
0.7
744
Normal
0.7
298
Normal
0.7
926
Normal
0.7
1046
Normal
0.7
864
Normal
0.7
482
Normal
0.7
111
Normal
0.7
858
Normal
0.7
222
Normal
0.7
412
Normal
0.7
132
Normal
0.6
1026
Normal
0.6
148
Normal
0.6
258
Normal
0.6
358
Normal
0.6
554
Normal
0.6
186
Normal
0.6
922
Normal
0.6
394
Normal
0.6
464
Normal
0.6
1016
Normal
0.6
1022
Normal
0.6
428
Normal
0.6
648
Normal
0.6
488
Normal
0.6
878
Normal
0.6
452
Normal
0.6
944
Normal
0.6
128
Normal
0.6
448
Normal
0.6
818
Normal
0.6
162
Normal
0.6
196
Normal
0.6
824
Normal
0.6
414
Normal
0.6
616
Normal
0.6
422
Normal
0.6
938
Normal
0.6
232
Normal
0.6
968
Normal
0.6
722
Normal
0.6
376
Normal
0.6
172
Normal
0.6
866
Normal
0.5
528
Normal
0.5
228
Normal
0.5
356
Normal
0.5
862
Normal
0.5
874
Normal
0.5
786
Normal
0.5
344
Normal
0.5
958
Normal
0.5
466
Normal
0.5
642
Normal
0.5
564
Normal
0.5
572
Normal
0.5
636
Normal
0.5
142
Normal
0.5
366
Normal
0.5
218
Normal
0.5
392
Normal
0.5
526
Normal
0.5
1014
Normal
0.5
686
Normal
0.5
954
Normal
0.5
914
Normal
0.5
912
Normal
0.5
716
Normal
0.5
278
Normal
0.5
286
Normal
0.5
568
Normal
0.5
514
Normal
0.5
314
Normal
0.4
364
Normal
0.4
816
Normal
0.4
474
Normal
0.4
918
Normal
0.4
332
Normal
0.4
1032
Normal
0.4
368
Normal
0.4
354
Normal
0.4
966
Normal
0.4
976
Normal
0.4
446
Normal
0.4
352
Normal
0.4
956
Normal
0.4
328
Normal
0.4
362
Normal
0.4
468
Normal
0.4
1028
Normal
0.4
227
Tumor
0.4
1044
Normal
0.4
388
Normal
0.4
696
Normal
0.4
416
Normal
0.4
212
Normal
0.4
778
Normal
0.4
666
Normal
0.3
136
Normal
0.3
955
Tumor
0.3
884
Normal
0.3
146
Normal
0.3
852
Normal
0.3
432
Normal
0.3
628
Normal
0.3
516
Normal
0.3
664
Normal
0.3
386
Normal
0.3
755
Tumor
0.3
1042
Normal
0.3
424
Normal
0.3
262
Normal
0.3
1027
Tumor
0.3
662
Normal
0.3
984
Normal
0.3
396
Normal
0.3
365
Tumor
0.3
982
Normal
0.3
785
Tumor
0.3
434
Normal
0.3
214
Normal
0.3
124
Normal
0.2
978
Normal
0.2
138
Normal
0.2
312
Normal
0.2
284
Normal
0.2
916
Normal
0.2
494
Normal
0.2
224
Normal
0.1
538
Normal
0.1
261
Tumor
0.1
272
Normal
0.1
126
Normal
0.1
558
Normal
0.1
384
Normal
0.1
524
Normal
0.0
615
Tumor
0.0
953
Tumor
0.0
727
Tumor
0.0
492
Normal
0.0
574
Normal
0.0
513
Tumor
0.0
465
Tumor
0.0
188
Normal
0.0
481
Tumor
0.0
925
Tumor
0.0
363
Tumor
0.0
257
Tumor
0.0
114
Normal
0.0
981
Tumor
-0.1
423
Tumor
-0.1
478
Normal
-0.1
361
Tumor
-0.1
498
Normal
-0.1
461
Tumor
-0.1
456
Normal
-0.2
915
Tumor
-0.2
192
Normal
-0.2
268
Normal
-0.2
672
Normal
-0.2
137
Tumor
-0.2
713
Tumor
-0.2
695
Tumor
-0.2
617
Tumor
-0.2
536
Normal
-0.2
444
Normal
-0.2
1043
Tumor
-0.3
745
Tumor
-0.3
515
Tumor
-0.3
267
Tumor
-0.3
415
Tumor
-0.3
867
Tumor
-0.3
327
Tumor
-0.3
635
Tumor
-0.3
217
Tumor
-0.4
145
Tumor
-0.4
563
Tumor
-0.4
141
Tumor
-0.4
923
Tumor
-0.4
223
Tumor
-0.4
937
Tumor
-0.4
873
Tumor
-0.4
127
Tumor
-0.4
451
Tumor
-0.5
353
Tumor
-0.5
357
Tumor
-0.5
1045
Tumor
-0.5
857
Tumor
-0.5
721
Tumor
-0.5
147
Tumor
-0.5
341
Tumor
-0.5
1041
Tumor
-0.6
195
Tumor
-0.6
477
Tumor
-0.6
1015
Tumor
-0.6
191
Tumor
-0.6
641
Tumor
-0.6
355
Tumor
-0.6
737
Tumor
-0.6
911
Tumor
-0.6
823
Tumor
-0.7
411
Tumor
-0.7
367
Tumor
-0.7
447
Tumor
-0.7
533
Tumor
-0.7
491
Tumor
-0.7
967
Tumor
-0.7
161
Tumor
-0.7
685
Tumor
-0.7
943
Tumor
-0.7
383
Tumor
-0.8
665
Tumor
-0.8
433
Tumor
-0.8
1025
Tumor
-0.8
697
Tumor
-0.8
741
Tumor
-0.8
113
Tumor
-0.8
957
Tumor
-0.8
471
Tumor
-0.8
421
Tumor
-0.8
777
Tumor
-0.8
435
Tumor
-0.8
313
Tumor
-0.8
185
Tumor
-0.8
487
Tumor
-0.9
814
Normal
-0.9
135
Tumor
-0.9
537
Tumor
-0.9
483
Tumor
-0.9
525
Tumor
-0.9
443
Tumor
-0.9
473
Tumor
-0.9
913
Tumor
-1.0
187
Tumor
-1.0
851
Tumor
-1.0
883
Tumor
-1.0
445
Tumor
-1.0
277
Tumor
-1.0
297
Tumor
-1.1
715
Tumor
-1.1
467
Tumor
-1.1
917
Tumor
-1.1
921
Tumor
-1.1
1013
Tumor
-1.1
863
Tumor
-1.1
375
Tumor
-1.1
427
Tumor
-1.1
393
Tumor
-1.2
881
Tumor
-1.2
983
Tumor
-1.2
387
Tumor
-1.2
557
Tumor
-1.2
221
Tumor
-1.2
523
Tumor
-1.2
813
Tumor
-1.2
1021
Tumor
-1.2
567
Tumor
-1.2
463
Tumor
-1.2
975
Tumor
-1.2
391
Tumor
-1.2
493
Tumor
-1.2
724
Normal
-1.2
413
Tumor
-1.2
497
Tumor
-1.3
125
Tumor
-1.3
865
Tumor
-1.3
963
Tumor
-1.3
1031
Tumor
-1.3
877
Tumor
-1.3
545
Tumor
-1.3
171
Tumor
-1.3
311
Tumor
-1.3
861
Tumor
-1.3
951
Tumor
-1.3
647
Tumor
-1.3
271
Tumor
-1.3
815
Tumor
-1.3
455
Tumor
-1.3
535
Tumor
-1.4
213
Tumor
-1.4
351
Tumor
-1.4
527
Tumor
-1.4
517
Tumor
-1.4
112
Tumor
-1.4
425
Tumor
-1.4
285
Tumor
-1.4
331
Tumor
-1.4
343
Tumor
-1.5
553
Tumor
-1.5
395
Tumor
-1.5
663
Tumor
-1.5
131
Tumor
-1.6
977
Tumor
-1.6
743
Tumor
-1.6
671
Tumor
-1.6
385
Tumor
-1.6
231
Tumor
-1.6
211
Tumor
-1.7
965
Tumor
-1.7
817
Tumor
-1.7
283
Tumor
-1.7
123
Tumor
-1.7
573
Tumor
-1.8
431
Tumor
-1.8
661
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
