HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:28.8 nTPM
GTEx:19.9 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:47.3 nTPM
Mouse:22.1 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042145Antibody HPA044987Antibody CAB045971Antibody CAB045972
Glial cells LowLowNot detectedLow
Neuronal cells MediumMediumMediumLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 28.8
Sample id Sample description nTPM
Hippocampus
nTPM: 23.4
1911 Female, age 85, right hemisphere 26.1
2148 Female, age 91, left hemisphere 24.2
2529 Female, age 94, left hemisphere 23.3
1898 Male, age 80, left hemisphere 23.0
2621 Female, age 67, right hemisphere 22.2
1855 Male, age 76, left hemisphere 21.5
Dentate gyrus
nTPM: 24.9
2531 Female, age 67, both hemispheres 30.3
2246 Female, age 85, both hemispheres 27.6
2010 Male, age 76, both hemispheres 23.5
2530 Female, age 94, left hemisphere 23.3
2528 Male, age 74, both hemispheres 23.0
1927 Female, age 91, both hemispheres 22.0
Entorhinal gyrus
nTPM: 28.8
2613 Female, age 94, left hemisphere 34.1
2764 Male, age 80, right hemisphere 31.2
2117 Female, age 91, right hemisphere 28.3
1787 Male, age 76, left hemisphere 27.6
2686 Male, age 75, right hemisphere 25.9
1938 Female, age 85, left hemisphere 25.7
Hippocampus, CA1
nTPM: 25.1
2527 Male, age 74, both hemispheres 26.8
2749 Male, age 80, left hemisphere 26.2
1873 Female, age 85, both hemispheres 25.3
2082 Female, age 91, right hemisphere 24.7
2045 Male, age 76, both hemispheres 22.7
Hippocampus, CA2
nTPM: 23.6
1940 Female, age 85, left hemisphere 27.9
2249 Male, age 74, both hemispheres 26.1
2113 Female, age 91, right hemisphere 25.4
2437 Female, age 94, left hemisphere 22.3
1963 Male, age 80, left hemisphere 20.3
1892 Male, age 76, both hemispheres 19.5
Hippocampus, CA3
nTPM: 26.7
2620 Female, age 94, left hemisphere 40.0
2861 Female, age 67, both hemispheres 25.8
1891 Female, age 85, both hemispheres 25.3
2436 Male, age 74, both hemispheres 25.2
2137 Male, age 80, left hemisphere 22.2
1867 Male, age 76, both hemispheres 21.6
Parahippocampal cortex
nTPM: 27.1
2622 Female, age 67, right hemisphere 33.1
1933 Female, age 85, both hemispheres 30.7
2018 Male, age 76, both hemispheres 29.1
2532 Female, age 72, left hemisphere 27.8
2245 Female, age 91, both hemispheres 26.6
2250 Female, age 67, right hemisphere 25.7
1990 Female, age 91, right hemisphere 25.2
2692 Male, age 74, both hemispheres 24.6
1850 Male, age 80, both hemispheres 24.4
2693 Female, age 94, both hemispheres 23.7
Perirhinal gyrus
nTPM: 25.7
1794 Male, age 80, right hemisphere 28.7
2848 Male, age 76, right hemisphere 26.5
1847 Female, age 91, left hemisphere 25.5
1841 Female, age 85, right hemisphere 24.1
2521 Female, age 94, right hemisphere 23.8
Subiculum
nTPM: 24.9
2042 Male, age 76, both hemispheres 28.9
1977 Female, age 85, both hemispheres 27.5
1901 Male, age 80, both hemispheres 26.4
2619 Male, age 74, both hemispheres 24.9
2729 Female, age 91, right hemisphere 21.6
2438 Female, age 94, left hemisphere 20.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 19.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.9
Samples: 197

Max nTPM: 34.6
Min nTPM: 11.4
Std nTPM: 3.6
Median nTPM: 19.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 34.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 31.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 31.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 30.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 29.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 29.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 26.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 26.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 26.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.0
FF:10169-103B7 60 years, female 40.5
FF:10153-102I9 76 years, female 29.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.3
Pig sample Sample description nTPM
Subiculum
nTPM: 36.6
Samples: 4

Max nTPM: 47.0
Min nTPM: 31.9
Sample A Female 47.0
Sample B Female 34.4
Sample C Male 32.9
Sample D Male 31.9
Dorsal hippocampus
nTPM: 47.3
Samples: 4

Max nTPM: 61.4
Min nTPM: 37.6
Sample A Female 61.4
Sample B Female 48.6
Sample C Male 41.7
Sample D Male 37.6
Entorhinal cortex
nTPM: 38.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 33.5
Sample A Female 41.0
Sample B Female 44.1
Sample C Male 35.0
Sample D Male 33.5
Ventral hippocampus
nTPM: 41.5
Samples: 4

Max nTPM: 49.6
Min nTPM: 30.6
Sample A Female 39.0
Sample B Female 30.6
Sample C Male 46.6
Sample D Male 49.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 22.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.1
Samples: 4

Max nTPM: 23.7
Min nTPM: 20.7
Sample A Male 21.0
Sample B Male 22.9
Sample C Female 23.7
Sample D Female 20.7
Hippocampal formation
nTPM: 19.9
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.7
Sample A Male 24.0
Sample B Male 17.7
Sample C Female 18.5
Sample D Female 19.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
556986 Antisense, RP_040825_02_G08, Mouse strain C57BL/6J (56 days, male) 1.3

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