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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
2.3
1044
Normal
2.2
536
Normal
2.0
1043
Tumor
1.8
448
Normal
1.7
698
Normal
1.5
1045
Tumor
1.5
447
Tumor
1.3
535
Tumor
1.3
1046
Normal
1.2
393
Tumor
1.1
443
Tumor
1.1
487
Tumor
1.0
1021
Tumor
0.9
396
Normal
0.9
387
Tumor
0.8
635
Tumor
0.8
343
Tumor
0.7
388
Normal
0.7
737
Tumor
0.7
367
Tumor
0.7
386
Normal
0.6
695
Tumor
0.6
394
Normal
0.6
957
Tumor
0.6
127
Tumor
0.6
1042
Normal
0.5
916
Normal
0.5
471
Tumor
0.5
615
Tumor
0.5
428
Normal
0.5
425
Tumor
0.5
884
Normal
0.5
363
Tumor
0.5
533
Tumor
0.5
392
Normal
0.5
924
Normal
0.5
424
Normal
0.4
123
Tumor
0.4
131
Tumor
0.4
727
Tumor
0.4
125
Tumor
0.4
435
Tumor
0.4
445
Tumor
0.4
112
Tumor
0.4
686
Normal
0.4
965
Tumor
0.4
882
Normal
0.4
383
Tumor
0.4
355
Tumor
0.4
723
Tumor
0.4
975
Tumor
0.4
211
Tumor
0.4
414
Normal
0.3
814
Normal
0.3
641
Tumor
0.3
431
Tumor
0.3
497
Tumor
0.3
715
Tumor
0.3
728
Normal
0.3
395
Tumor
0.3
463
Tumor
0.3
365
Tumor
0.3
341
Tumor
0.3
415
Tumor
0.3
912
Normal
0.3
473
Tumor
0.3
391
Tumor
0.3
228
Normal
0.3
368
Normal
0.3
741
Tumor
0.3
416
Normal
0.3
513
Tumor
0.3
636
Normal
0.2
411
Tumor
0.2
713
Tumor
0.2
481
Tumor
0.2
546
Normal
0.2
356
Normal
0.2
413
Tumor
0.2
963
Tumor
0.2
135
Tumor
0.2
421
Tumor
0.2
922
Normal
0.2
353
Tumor
0.2
527
Tumor
0.2
227
Tumor
0.2
567
Tumor
0.2
384
Normal
0.2
722
Normal
0.2
926
Normal
0.2
571
Tumor
0.2
553
Tumor
0.2
724
Normal
0.2
923
Tumor
0.2
661
Tumor
0.2
354
Normal
0.2
743
Tumor
0.2
1041
Tumor
0.2
716
Normal
0.2
231
Tumor
0.2
268
Normal
0.1
917
Tumor
0.1
271
Tumor
0.1
746
Normal
0.1
385
Tumor
0.1
482
Normal
0.1
956
Normal
0.1
642
Normal
0.1
455
Tumor
0.1
327
Tumor
0.1
817
Tumor
0.1
376
Normal
0.1
423
Tumor
0.1
283
Tumor
0.1
1022
Normal
0.1
938
Normal
0.1
187
Tumor
0.1
344
Normal
0.1
528
Normal
0.1
911
Tumor
0.1
366
Normal
0.1
517
Tumor
0.1
918
Normal
0.1
954
Normal
0.1
572
Normal
0.1
446
Normal
0.1
785
Tumor
0.1
672
Normal
0.1
534
Normal
0.1
883
Tumor
0.1
778
Normal
0.1
465
Tumor
0.1
516
Normal
0.1
161
Tumor
0.1
616
Normal
0.1
498
Normal
0.1
147
Tumor
0.1
262
Normal
0.1
721
Tumor
0.1
426
Normal
0.1
755
Tumor
0.1
914
Normal
0.1
1032
Normal
0.1
464
Normal
0.1
342
Normal
0.1
257
Tumor
0.0
714
Normal
0.0
866
Normal
0.0
286
Normal
0.0
422
Normal
0.0
141
Tumor
0.0
357
Tumor
0.0
477
Tumor
0.0
484
Normal
0.0
671
Tumor
0.0
663
Tumor
0.0
433
Tumor
0.0
466
Normal
0.0
284
Normal
0.0
868
Normal
0.0
456
Normal
0.0
554
Normal
0.0
925
Tumor
0.0
685
Tumor
0.0
375
Tumor
0.0
558
Normal
0.0
786
Normal
0.0
361
Tumor
0.0
444
Normal
0.0
878
Normal
0.0
126
Normal
0.0
573
Tumor
0.0
261
Tumor
0.0
478
Normal
0.0
483
Tumor
0.0
647
Tumor
0.0
171
Tumor
0.0
745
Tumor
0.0
944
Normal
0.0
352
Normal
0.0
813
Tumor
0.0
563
Tumor
0.0
358
Normal
0.0
427
Tumor
0.0
863
Tumor
-0.1
627
Tumor
-0.1
148
Normal
-0.1
137
Tumor
-0.1
492
Normal
-0.1
488
Normal
-0.1
514
Normal
-0.1
432
Normal
-0.1
467
Tumor
-0.1
518
Normal
-0.1
258
Normal
-0.1
958
Normal
-0.1
877
Tumor
-0.1
188
Normal
-0.1
815
Tumor
-0.1
526
Normal
-0.1
967
Tumor
-0.1
664
Normal
-0.1
452
Normal
-0.1
128
Normal
-0.1
862
Normal
-0.1
628
Normal
-0.1
867
Tumor
-0.1
494
Normal
-0.1
1026
Normal
-0.1
451
Tumor
-0.1
913
Tumor
-0.1
232
Normal
-0.2
568
Normal
-0.2
1031
Tumor
-0.2
662
Normal
-0.2
953
Tumor
-0.2
111
Normal
-0.2
951
Tumor
-0.2
881
Tumor
-0.2
742
Normal
-0.2
364
Normal
-0.2
285
Tumor
-0.2
138
Normal
-0.2
756
Normal
-0.2
937
Tumor
-0.2
976
Normal
-0.2
874
Normal
-0.2
964
Normal
-0.2
491
Tumor
-0.2
738
Normal
-0.2
538
Normal
-0.2
472
Normal
-0.2
865
Tumor
-0.2
172
Normal
-0.2
468
Normal
-0.2
362
Normal
-0.2
461
Tumor
-0.2
864
Normal
-0.2
436
Normal
-0.2
858
Normal
-0.2
114
Normal
-0.2
328
Normal
-0.3
564
Normal
-0.3
272
Normal
-0.3
857
Tumor
-0.3
952
Normal
-0.3
852
Normal
-0.3
474
Normal
-0.3
545
Tumor
-0.3
968
Normal
-0.3
966
Normal
-0.3
224
Normal
-0.3
113
Tumor
-0.3
818
Normal
-0.3
873
Tumor
-0.3
162
Normal
-0.3
185
Tumor
-0.3
915
Tumor
-0.3
124
Normal
-0.3
696
Normal
-0.3
943
Tumor
-0.3
515
Tumor
-0.3
1028
Normal
-0.3
574
Normal
-0.3
523
Tumor
-0.3
145
Tumor
-0.3
955
Tumor
-0.4
921
Tumor
-0.4
462
Normal
-0.4
186
Normal
-0.4
142
Normal
-0.4
212
Normal
-0.4
223
Tumor
-0.4
351
Tumor
-0.4
648
Normal
-0.4
146
Normal
-0.4
824
Normal
-0.4
524
Normal
-0.4
267
Tumor
-0.4
617
Tumor
-0.4
493
Tumor
-0.5
136
Normal
-0.5
412
Normal
-0.5
823
Tumor
-0.5
777
Tumor
-0.5
132
Normal
-0.5
666
Normal
-0.5
434
Normal
-0.5
816
Normal
-0.6
525
Tumor
-0.6
861
Tumor
-0.6
557
Tumor
-0.6
1027
Tumor
-0.6
1025
Tumor
-0.6
618
Normal
-0.6
537
Tumor
-0.6
665
Tumor
-0.7
851
Tumor
-0.8
744
Normal
-2.1
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
