MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.0 nTPM
HPA Brain:85.2 nTPM
GTEx:56.0 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:71.6 nTPM
Mouse:9.4 nTPM
Allen mouse:16.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.9
2586 Male, age 75, left hemisphere 133.3
2666 Male, age 74, left hemisphere 104.5
2828 Female, age 72, unknown 95.6
1833 Male, age 53, unknown 73.8
1827 Male, age 72, unknown 73.6
1830 Male, age 51, unknown 72.4
2019 Male, age 18, unknown 71.4
2411 Female, age 72, unknown 68.6
1870 Female, age 42, unknown 66.2
2219 Male, age 76, both hemispheres 60.1
Dorsal raphe nucleus
nTPM: 58.6
2016 Female, age 72, unknown 72.4
1828 Male, age 53, unknown 63.6
2750 Male, age 76, both hemispheres 57.3
2047 Male, age 72, unknown 52.9
2298 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 59.4
2849 Male, age 72, unknown 70.8
1848 Female, age 42, unknown 60.6
1890 Male, age 53, unknown 60.1
2097 Female, age 72, unknown 46.0
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 71.1
2502 Female, age 75, unknown 76.0
1795 Male, age 51, unknown 74.4
1947 Male, age 18, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 60.3
1831 Male, age 72, unknown 68.5
2464 Female, age 72, unknown 66.9
1840 Male, age 53, unknown 55.4
2850 Male, age 76, both hemispheres 50.3
Periaquaductal grey, lateral
nTPM: 57.9
2053 Male, age 18, unknown 69.6
2272 Male, age 74, both hemispheres 53.1
2140 Male, age 76, both hemispheres 51.0
Pretectal area
nTPM: 66.4
2407 Male, age 75, both hemispheres 81.1
1815 Male, age 53, unknown 78.4
2007 Male, age 72, unknown 71.6
1816 Male, age 51, unknown 71.5
1817 Female, age 42, unknown 69.7
2316 Male, age 76, right hemisphere 68.3
2825 Male, age 18, unknown 68.3
1944 Female, age 72, unknown 66.2
2273 Male, age 74, both hemispheres 53.1
2667 Female, age 75, unknown 52.4
2224 Female, age 72, unknown 49.8
Red nucleus
nTPM: 85.2
2584 Male, age 75, left hemisphere 103.7
2588 Male, age 74, left hemisphere 96.6
2823 Male, age 76, right hemisphere 91.1
2503 Female, age 72, unknown 88.7
1904 Male, age 53, unknown 87.9
2769 Male, age 72, unknown 84.4
2227 Male, age 72, unknown 83.0
2785 Male, age 18, unknown 82.8
2725 Female, age 75, unknown 80.4
1865 Male, age 51, unknown 80.3
1954 Female, age 42, unknown 72.1
1821 Female, age 72, unknown 71.7
Substantia nigra
nTPM: 65.0
2583 Male, age 75, right hemisphere 85.9
2665 Male, age 74, both hemispheres 78.0
2590 Female, age 75, unknown 77.0
2699 Male, age 18, unknown 70.6
2409 Female, age 72, unknown 65.1
1851 Male, age 51, unknown 64.7
1889 Female, age 72, unknown 61.0
1941 Male, age 53, unknown 52.8
1916 Female, age 42, unknown 51.9
2241 Male, age 72, unknown 43.1
Superior colliculus
nTPM: 81.0
2664 Male, age 75, both hemispheres 118.0
1995 Male, age 72, unknown 94.8
1913 Female, age 42, unknown 85.4
2668 Female, age 75, unknown 81.3
2587 Male, age 74, left hemisphere 79.2
1796 Male, age 53, unknown 76.0
1839 Male, age 51, unknown 74.7
2261 Male, age 18, unknown 73.4
2087 Female, age 72, unknown 65.1
1895 Male, age 76, right hemisphere 62.2
Ventral tegmental area
nTPM: 62.3
2410 Female, age 72, unknown 68.4
1942 Male, age 51, unknown 66.4
2021 Male, age 53, unknown 65.7
2223 Female, age 72, unknown 62.2
1915 Female, age 42, unknown 59.0
2218 Male, age 76, both hemispheres 52.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.0
Samples: 139

Max nTPM: 135.4
Min nTPM: 17.3
Std nTPM: 25.5
Median nTPM: 50.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 135.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 132.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 130.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 127.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 127.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 119.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 106.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 101.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 98.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.1
FF:10158-103A5 76 years, female 68.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.6
Samples: 4

Max nTPM: 93.7
Min nTPM: 58.0
Sample A Female 71.0
Sample B Female 58.0
Sample C Male 63.8
Sample D Male 93.7
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 99.0
Min nTPM: 57.6
Sample A Female 99.0
Sample B Female 66.2
Sample C Male 62.4
Sample D Male 57.6
Periaqueductal gray
nTPM: 50.2
Samples: 3

Max nTPM: 56.5
Min nTPM: 46.8
Sample B Female 56.5
Sample C Male 46.8
Sample D Male 47.3
Superior colliculi
nTPM: 64.2
Samples: 4

Max nTPM: 72.8
Min nTPM: 52.7
Sample A Female 68.3
Sample B Female 52.7
Sample C Male 62.9
Sample D Male 72.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.4
Sample A Male 8.4
Sample B Male 9.1
Sample C Female 9.2
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.8
73584717 Antisense, RP_051121_03_H06, Mouse strain C57BL/6J (56 days, male) 16.8

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