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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR48 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR48 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.0
965
Tumor
0.9
285
Tumor
0.8
227
Tumor
0.5
517
Tumor
0.5
1041
Tumor
0.5
743
Tumor
0.4
1025
Tumor
0.3
981
Tumor
0.3
351
Tumor
0.3
221
Tumor
0.3
131
Tumor
0.3
817
Tumor
0.3
487
Tumor
0.3
865
Tumor
0.3
921
Tumor
0.3
957
Tumor
0.3
967
Tumor
0.3
391
Tumor
0.3
724
Normal
0.3
983
Tumor
0.2
463
Tumor
0.2
1022
Normal
0.2
1021
Tumor
0.2
1031
Tumor
0.2
951
Tumor
0.2
161
Tumor
0.2
975
Tumor
0.2
737
Tumor
0.2
554
Normal
0.2
877
Tumor
0.2
331
Tumor
0.2
572
Normal
0.2
1032
Normal
0.2
573
Tumor
0.2
978
Normal
0.2
314
Normal
0.2
671
Tumor
0.2
1042
Normal
0.2
958
Normal
0.2
742
Normal
0.2
715
Tumor
0.2
553
Tumor
0.2
546
Normal
0.2
223
Tumor
0.2
952
Normal
0.2
956
Normal
0.2
211
Tumor
0.2
367
Tumor
0.2
943
Tumor
0.2
1028
Normal
0.2
881
Tumor
0.2
363
Tumor
0.2
955
Tumor
0.2
661
Tumor
0.2
1043
Tumor
0.2
192
Normal
0.2
427
Tumor
0.2
395
Tumor
0.1
428
Normal
0.1
977
Tumor
0.1
1026
Normal
0.1
473
Tumor
0.1
1044
Normal
0.1
695
Tumor
0.1
422
Normal
0.1
558
Normal
0.1
874
Normal
0.1
1014
Normal
0.1
523
Tumor
0.1
212
Normal
0.1
414
Normal
0.1
534
Normal
0.1
147
Tumor
0.1
278
Normal
0.1
518
Normal
0.1
488
Normal
0.1
982
Normal
0.1
721
Tumor
0.1
966
Normal
0.1
964
Normal
0.1
436
Normal
0.1
533
Tumor
0.1
298
Normal
0.1
963
Tumor
0.1
1015
Tumor
0.1
186
Normal
0.1
477
Tumor
0.1
218
Normal
0.1
815
Tumor
0.1
188
Normal
0.1
162
Normal
0.1
574
Normal
0.1
132
Normal
0.1
727
Tumor
0.1
535
Tumor
0.1
824
Normal
0.1
723
Tumor
0.1
385
Tumor
0.1
525
Tumor
0.1
474
Normal
0.1
111
Normal
0.1
528
Normal
0.1
492
Normal
0.1
666
Normal
0.1
332
Normal
0.1
1016
Normal
0.1
222
Normal
0.1
217
Tumor
0.1
663
Tumor
0.1
271
Tumor
0.1
937
Tumor
0.1
214
Normal
0.1
538
Normal
0.1
852
Normal
0.1
172
Normal
0.1
916
Normal
0.1
777
Tumor
0.1
113
Tumor
0.1
861
Tumor
0.1
312
Normal
0.1
524
Normal
0.1
432
Normal
0.1
917
Tumor
0.1
665
Tumor
0.1
924
Normal
0.1
1046
Normal
0.1
984
Normal
0.1
968
Normal
0.1
413
Tumor
0.1
394
Normal
0.1
647
Tumor
0.1
484
Normal
0.1
196
Normal
0.1
746
Normal
0.1
388
Normal
0.1
195
Tumor
0.1
462
Normal
0.1
448
Normal
0.1
187
Tumor
0.1
434
Normal
0.1
494
Normal
0.1
851
Tumor
0.1
568
Normal
0.1
664
Normal
0.1
425
Tumor
0.1
741
Tumor
0.1
868
Normal
0.1
858
Normal
0.0
128
Normal
0.0
386
Normal
0.0
698
Normal
0.0
617
Tumor
0.0
277
Tumor
0.0
648
Normal
0.0
816
Normal
0.0
148
Normal
0.0
353
Tumor
0.0
286
Normal
0.0
662
Normal
0.0
412
Normal
0.0
722
Normal
0.0
498
Normal
0.0
728
Normal
0.0
564
Normal
0.0
415
Tumor
0.0
563
Tumor
0.0
818
Normal
0.0
938
Normal
0.0
925
Tumor
0.0
926
Normal
0.0
918
Normal
0.0
884
Normal
0.0
537
Tumor
0.0
471
Tumor
0.0
914
Normal
0.0
862
Normal
0.0
786
Normal
0.0
416
Normal
0.0
823
Tumor
0.0
267
Tumor
0.0
696
Normal
0.0
127
Tumor
0.0
258
Normal
0.0
863
Tumor
0.0
343
Tumor
0.0
878
Normal
0.0
461
Tumor
0.0
396
Normal
0.0
261
Tumor
0.0
516
Normal
0.0
536
Normal
0.0
426
Normal
0.0
355
Tumor
0.0
867
Tumor
0.0
882
Normal
0.0
268
Normal
0.0
976
Normal
0.0
191
Tumor
0.0
714
Normal
0.0
142
Normal
0.0
873
Tumor
0.0
527
Tumor
0.0
744
Normal
0.0
686
Normal
0.0
431
Tumor
0.0
444
Normal
0.0
421
Tumor
0.0
446
Normal
0.0
915
Tumor
0.0
922
Normal
0.0
813
Tumor
0.0
778
Normal
0.0
342
Normal
0.0
284
Normal
0.0
126
Normal
0.0
466
Normal
0.0
171
Tumor
0.0
738
Normal
0.0
864
Normal
0.0
756
Normal
0.0
392
Normal
0.0
716
Normal
0.0
1027
Tumor
0.0
344
Normal
0.0
467
Tumor
0.0
424
Normal
0.0
944
Normal
0.0
185
Tumor
0.0
297
Tumor
0.0
755
Tumor
0.0
358
Normal
0.0
814
Normal
0.0
123
Tumor
0.0
478
Normal
0.0
362
Normal
-0.1
557
Tumor
-0.1
482
Normal
-0.1
327
Tumor
-0.1
141
Tumor
-0.1
883
Tumor
-0.1
228
Normal
-0.1
491
Tumor
-0.1
912
Normal
-0.1
497
Tumor
-0.1
472
Normal
-0.1
124
Normal
-0.1
911
Tumor
-0.1
224
Normal
-0.1
341
Tumor
-0.1
464
Normal
-0.1
514
Normal
-0.1
257
Tumor
-0.1
354
Normal
-0.1
866
Normal
-0.1
697
Tumor
-0.1
857
Tumor
-0.1
785
Tumor
-0.1
213
Tumor
-0.1
272
Normal
-0.1
745
Tumor
-0.1
483
Tumor
-0.1
1045
Tumor
-0.1
311
Tumor
-0.1
481
Tumor
-0.1
137
Tumor
-0.1
138
Normal
-0.1
672
Normal
-0.1
526
Normal
-0.1
376
Normal
-0.1
114
Normal
-0.1
146
Normal
-0.1
364
Normal
-0.1
352
Normal
-0.1
954
Normal
-0.1
452
Normal
-0.1
262
Normal
-0.1
433
Tumor
-0.1
641
Tumor
-0.1
136
Normal
-0.1
283
Tumor
-0.1
375
Tumor
-0.1
468
Normal
-0.1
923
Tumor
-0.1
145
Tumor
-0.1
393
Tumor
-0.1
953
Tumor
-0.2
383
Tumor
-0.2
112
Tumor
-0.2
135
Tumor
-0.2
365
Tumor
-0.2
447
Tumor
-0.2
545
Tumor
-0.2
356
Normal
-0.2
435
Tumor
-0.2
465
Tumor
-0.2
232
Normal
-0.2
443
Tumor
-0.2
328
Normal
-0.2
423
Tumor
-0.2
713
Tumor
-0.2
1013
Tumor
-0.2
456
Normal
-0.2
515
Tumor
-0.2
411
Tumor
-0.2
125
Tumor
-0.2
913
Tumor
-0.2
313
Tumor
-0.2
455
Tumor
-0.2
642
Normal
-0.2
361
Tumor
-0.2
451
Tumor
-0.3
685
Tumor
-0.3
357
Tumor
-0.3
636
Normal
-0.3
493
Tumor
-0.3
384
Normal
-0.3
618
Normal
-0.3
513
Tumor
-0.3
366
Normal
-0.3
445
Tumor
-0.3
615
Tumor
-0.3
231
Tumor
-0.3
368
Normal
-0.3
387
Tumor
-0.3
571
Tumor
-0.4
627
Tumor
-0.4
628
Normal
-0.4
635
Tumor
-0.5
616
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
