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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLSCR4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLSCR4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.1
778
Normal
0.9
723
Tumor
0.9
636
Normal
0.9
426
Normal
0.9
686
Normal
0.9
1014
Normal
0.8
954
Normal
0.8
695
Tumor
0.8
696
Normal
0.8
984
Normal
0.8
698
Normal
0.8
568
Normal
0.8
452
Normal
0.7
952
Normal
0.7
744
Normal
0.7
742
Normal
0.7
616
Normal
0.7
218
Normal
0.7
878
Normal
0.7
376
Normal
0.7
958
Normal
0.7
392
Normal
0.7
1046
Normal
0.7
146
Normal
0.7
964
Normal
0.7
124
Normal
0.6
924
Normal
0.6
938
Normal
0.6
114
Normal
0.6
944
Normal
0.6
862
Normal
0.6
554
Normal
0.6
498
Normal
0.6
714
Normal
0.6
536
Normal
0.6
1028
Normal
0.6
738
Normal
0.6
228
Normal
0.6
756
Normal
0.6
672
Normal
0.6
364
Normal
0.6
786
Normal
0.5
1044
Normal
0.5
746
Normal
0.5
538
Normal
0.5
186
Normal
0.5
558
Normal
0.5
488
Normal
0.5
444
Normal
0.5
162
Normal
0.5
968
Normal
0.5
926
Normal
0.5
563
Tumor
0.5
572
Normal
0.5
424
Normal
0.5
912
Normal
0.5
111
Normal
0.5
192
Normal
0.5
196
Normal
0.5
882
Normal
0.5
384
Normal
0.5
866
Normal
0.5
955
Tumor
0.4
628
Normal
0.4
642
Normal
0.4
937
Tumor
0.4
722
Normal
0.4
232
Normal
0.4
1022
Normal
0.4
142
Normal
0.4
368
Normal
0.4
487
Tumor
0.4
666
Normal
0.4
212
Normal
0.4
816
Normal
0.4
818
Normal
0.4
298
Normal
0.4
284
Normal
0.4
414
Normal
0.4
128
Normal
0.4
148
Normal
0.4
224
Normal
0.4
478
Normal
0.4
432
Normal
0.4
1026
Normal
0.4
214
Normal
0.4
573
Tumor
0.4
664
Normal
0.4
618
Normal
0.4
286
Normal
0.4
956
Normal
0.4
446
Normal
0.4
396
Normal
0.4
982
Normal
0.4
195
Tumor
0.3
222
Normal
0.3
966
Normal
0.3
884
Normal
0.3
662
Normal
0.3
394
Normal
0.3
172
Normal
0.3
386
Normal
0.3
858
Normal
0.3
868
Normal
0.3
922
Normal
0.3
526
Normal
0.3
448
Normal
0.3
474
Normal
0.3
737
Tumor
0.3
728
Normal
0.3
412
Normal
0.3
976
Normal
0.3
484
Normal
0.3
366
Normal
0.3
132
Normal
0.3
352
Normal
0.3
344
Normal
0.3
422
Normal
0.3
918
Normal
0.3
1042
Normal
0.3
528
Normal
0.3
332
Normal
0.3
564
Normal
0.3
342
Normal
0.2
983
Tumor
0.2
546
Normal
0.2
436
Normal
0.2
188
Normal
0.2
126
Normal
0.2
545
Tumor
0.2
388
Normal
0.2
815
Tumor
0.2
978
Normal
0.2
1016
Normal
0.2
852
Normal
0.2
574
Normal
0.2
494
Normal
0.2
217
Tumor
0.2
514
Normal
0.2
493
Tumor
0.2
482
Normal
0.2
423
Tumor
0.2
874
Normal
0.2
916
Normal
0.2
428
Normal
0.2
434
Normal
0.2
864
Normal
0.2
358
Normal
0.2
873
Tumor
0.2
914
Normal
0.1
824
Normal
0.1
138
Normal
0.1
356
Normal
0.1
472
Normal
0.1
113
Tumor
0.1
354
Normal
0.1
1032
Normal
0.1
343
Tumor
0.1
524
Normal
0.1
341
Tumor
0.1
112
Tumor
0.1
867
Tumor
0.1
517
Tumor
0.1
362
Normal
0.1
721
Tumor
0.1
421
Tumor
0.1
415
Tumor
0.1
663
Tumor
0.1
314
Normal
0.1
716
Normal
0.0
917
Tumor
0.0
727
Tumor
0.0
462
Normal
0.0
516
Normal
0.0
367
Tumor
0.0
648
Normal
0.0
492
Normal
0.0
477
Tumor
0.0
745
Tumor
0.0
223
Tumor
0.0
268
Normal
0.0
464
Normal
0.0
383
Tumor
-0.1
518
Normal
-0.1
466
Normal
-0.1
161
Tumor
-0.1
1045
Tumor
-0.1
1015
Tumor
-0.1
535
Tumor
-0.1
185
Tumor
-0.1
981
Tumor
-0.1
328
Normal
-0.1
456
Normal
-0.1
463
Tumor
-0.1
137
Tumor
-0.1
963
Tumor
-0.1
755
Tumor
-0.1
387
Tumor
-0.1
741
Tumor
-0.1
443
Tumor
-0.1
534
Normal
-0.1
943
Tumor
-0.1
258
Normal
-0.1
468
Normal
-0.1
497
Tumor
-0.1
272
Normal
-0.1
527
Tumor
-0.1
433
Tumor
-0.1
461
Tumor
-0.1
925
Tumor
-0.1
857
Tumor
-0.1
278
Normal
-0.2
515
Tumor
-0.2
483
Tumor
-0.2
145
Tumor
-0.2
135
Tumor
-0.2
823
Tumor
-0.2
431
Tumor
-0.2
617
Tumor
-0.2
416
Normal
-0.2
863
Tumor
-0.2
533
Tumor
-0.2
447
Tumor
-0.2
1041
Tumor
-0.2
1031
Tumor
-0.2
213
Tumor
-0.2
312
Normal
-0.2
136
Normal
-0.2
365
Tumor
-0.2
525
Tumor
-0.2
361
Tumor
-0.3
262
Normal
-0.3
455
Tumor
-0.3
187
Tumor
-0.3
467
Tumor
-0.3
615
Tumor
-0.3
283
Tumor
-0.3
141
Tumor
-0.3
877
Tumor
-0.3
627
Tumor
-0.3
553
Tumor
-0.3
851
Tumor
-0.3
523
Tumor
-0.3
375
Tumor
-0.4
125
Tumor
-0.4
451
Tumor
-0.4
913
Tumor
-0.4
814
Normal
-0.4
481
Tumor
-0.4
445
Tumor
-0.4
1025
Tumor
-0.4
353
Tumor
-0.4
915
Tumor
-0.4
957
Tumor
-0.4
557
Tumor
-0.4
395
Tumor
-0.4
635
Tumor
-0.4
661
Tumor
-0.4
191
Tumor
-0.5
567
Tumor
-0.5
327
Tumor
-0.5
813
Tumor
-0.5
923
Tumor
-0.5
785
Tumor
-0.5
413
Tumor
-0.5
881
Tumor
-0.5
127
Tumor
-0.5
861
Tumor
-0.5
883
Tumor
-0.5
227
Tumor
-0.5
713
Tumor
-0.5
285
Tumor
-0.5
817
Tumor
-0.6
435
Tumor
-0.6
571
Tumor
-0.6
297
Tumor
-0.6
311
Tumor
-0.6
865
Tumor
-0.6
221
Tumor
-0.6
391
Tumor
-0.6
743
Tumor
-0.6
363
Tumor
-0.7
1013
Tumor
-0.7
393
Tumor
-0.7
465
Tumor
-0.7
267
Tumor
-0.7
1043
Tumor
-0.7
491
Tumor
-0.7
355
Tumor
-0.7
1021
Tumor
-0.7
513
Tumor
-0.7
977
Tumor
-0.7
385
Tumor
-0.8
911
Tumor
-0.8
724
Normal
-0.8
975
Tumor
-0.8
953
Tumor
-0.9
411
Tumor
-0.9
471
Tumor
-0.9
671
Tumor
-0.9
715
Tumor
-0.9
357
Tumor
-0.9
131
Tumor
-0.9
277
Tumor
-0.9
641
Tumor
-0.9
665
Tumor
-0.9
777
Tumor
-0.9
351
Tumor
-1.0
427
Tumor
-1.0
271
Tumor
-1.0
211
Tumor
-1.0
967
Tumor
-1.0
921
Tumor
-1.1
647
Tumor
-1.1
697
Tumor
-1.1
313
Tumor
-1.2
123
Tumor
-1.2
951
Tumor
-1.2
473
Tumor
-1.2
685
Tumor
-1.2
147
Tumor
-1.3
231
Tumor
-1.3
331
Tumor
-1.3
965
Tumor
-1.3
257
Tumor
-1.4
1027
Tumor
-1.4
171
Tumor
-1.4
537
Tumor
-1.4
261
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
