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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBE1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
144.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
131.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
94.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
75.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
66.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
64.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
63.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
60.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
58.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
58.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
53.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
52.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
49.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
47.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
46.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
46.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
42.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
41.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
35.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
119.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
89.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
75.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
75.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
75.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
69.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
67.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
66.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
65.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
60.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
55.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
298
Normal
1.2
436
Normal
1.1
342
Normal
1.1
723
Tumor
1.1
466
Normal
1.0
648
Normal
1.0
664
Normal
1.0
746
Normal
0.9
162
Normal
0.9
394
Normal
0.9
172
Normal
0.9
616
Normal
0.9
222
Normal
0.9
738
Normal
0.9
912
Normal
0.9
1026
Normal
0.9
426
Normal
0.8
777
Tumor
0.8
728
Normal
0.8
1022
Normal
0.8
414
Normal
0.8
882
Normal
0.8
136
Normal
0.8
862
Normal
0.8
111
Normal
0.8
818
Normal
0.8
742
Normal
0.7
432
Normal
0.7
114
Normal
0.7
698
Normal
0.7
196
Normal
0.7
186
Normal
0.7
456
Normal
0.7
564
Normal
0.7
816
Normal
0.7
148
Normal
0.7
132
Normal
0.7
824
Normal
0.7
472
Normal
0.7
214
Normal
0.7
518
Normal
0.7
786
Normal
0.7
257
Tumor
0.6
617
Tumor
0.6
482
Normal
0.6
618
Normal
0.6
666
Normal
0.6
267
Tumor
0.6
218
Normal
0.6
424
Normal
0.6
258
Normal
0.6
462
Normal
0.6
327
Tumor
0.6
392
Normal
0.6
756
Normal
0.6
464
Normal
0.6
353
Tumor
0.6
858
Normal
0.6
428
Normal
0.6
358
Normal
0.6
278
Normal
0.6
714
Normal
0.6
722
Normal
0.6
955
Tumor
0.6
1016
Normal
0.6
952
Normal
0.6
745
Tumor
0.6
534
Normal
0.6
484
Normal
0.6
376
Normal
0.6
968
Normal
0.5
314
Normal
0.5
356
Normal
0.5
452
Normal
0.5
615
Tumor
0.5
567
Tumor
0.5
128
Normal
0.5
546
Normal
0.5
568
Normal
0.5
966
Normal
0.5
386
Normal
0.5
878
Normal
0.5
138
Normal
0.5
964
Normal
0.5
286
Normal
0.5
938
Normal
0.5
354
Normal
0.5
448
Normal
0.5
228
Normal
0.5
866
Normal
0.5
627
Tumor
0.5
328
Normal
0.5
422
Normal
0.5
574
Normal
0.4
864
Normal
0.4
662
Normal
0.4
474
Normal
0.4
528
Normal
0.4
1014
Normal
0.4
126
Normal
0.4
744
Normal
0.4
368
Normal
0.4
1032
Normal
0.4
868
Normal
0.4
146
Normal
0.4
778
Normal
0.4
628
Normal
0.4
926
Normal
0.4
312
Normal
0.4
446
Normal
0.4
388
Normal
0.4
344
Normal
0.4
1046
Normal
0.4
364
Normal
0.4
716
Normal
0.4
272
Normal
0.4
558
Normal
0.4
884
Normal
0.3
636
Normal
0.3
1044
Normal
0.3
572
Normal
0.3
1041
Tumor
0.3
924
Normal
0.3
976
Normal
0.3
956
Normal
0.3
874
Normal
0.3
366
Normal
0.3
982
Normal
0.3
468
Normal
0.3
488
Normal
0.3
332
Normal
0.3
911
Tumor
0.3
944
Normal
0.3
375
Tumor
0.3
425
Tumor
0.3
142
Normal
0.3
284
Normal
0.2
515
Tumor
0.2
514
Normal
0.2
352
Normal
0.2
416
Normal
0.2
191
Tumor
0.2
362
Normal
0.2
554
Normal
0.2
232
Normal
0.2
1042
Normal
0.2
412
Normal
0.2
396
Normal
0.2
922
Normal
0.2
141
Tumor
0.2
262
Normal
0.1
642
Normal
0.1
914
Normal
0.1
427
Tumor
0.1
696
Normal
0.1
978
Normal
0.1
686
Normal
0.1
958
Normal
0.1
135
Tumor
0.1
984
Normal
0.1
125
Tumor
0.1
918
Normal
0.1
434
Normal
0.1
192
Normal
0.1
527
Tumor
0.1
672
Normal
0.1
852
Normal
0.1
494
Normal
0.1
526
Normal
0.1
663
Tumor
0.1
913
Tumor
0.0
212
Normal
0.0
145
Tumor
0.0
137
Tumor
0.0
1028
Normal
0.0
113
Tumor
0.0
481
Tumor
0.0
217
Tumor
0.0
445
Tumor
-0.1
813
Tumor
-0.1
421
Tumor
-0.1
384
Normal
-0.1
785
Tumor
-0.1
916
Normal
-0.1
563
Tumor
-0.1
124
Normal
-0.1
954
Normal
-0.1
537
Tumor
-0.1
573
Tumor
-0.1
423
Tumor
-0.1
523
Tumor
-0.1
224
Normal
-0.1
188
Normal
-0.1
268
Normal
-0.2
223
Tumor
-0.2
755
Tumor
-0.2
127
Tumor
-0.2
478
Normal
-0.2
863
Tumor
-0.2
721
Tumor
-0.2
1043
Tumor
-0.2
313
Tumor
-0.2
491
Tumor
-0.2
516
Normal
-0.2
873
Tumor
-0.2
498
Normal
-0.2
444
Normal
-0.2
513
Tumor
-0.2
451
Tumor
-0.2
161
Tumor
-0.2
261
Tumor
-0.3
925
Tumor
-0.3
361
Tumor
-0.3
538
Normal
-0.3
461
Tumor
-0.3
195
Tumor
-0.3
533
Tumor
-0.3
492
Normal
-0.4
465
Tumor
-0.4
915
Tumor
-0.4
737
Tumor
-0.4
741
Tumor
-0.4
487
Tumor
-0.4
365
Tumor
-0.4
393
Tumor
-0.4
524
Normal
-0.5
467
Tumor
-0.5
297
Tumor
-0.5
685
Tumor
-0.5
415
Tumor
-0.5
525
Tumor
-0.5
1027
Tumor
-0.5
867
Tumor
-0.5
1045
Tumor
-0.5
571
Tumor
-0.5
383
Tumor
-0.6
857
Tumor
-0.6
517
Tumor
-0.6
981
Tumor
-0.6
455
Tumor
-0.6
231
Tumor
-0.6
343
Tumor
-0.6
865
Tumor
-0.6
695
Tumor
-0.6
635
Tumor
-0.6
814
Normal
-0.6
411
Tumor
-0.6
823
Tumor
-0.6
433
Tumor
-0.6
112
Tumor
-0.6
431
Tumor
-0.7
213
Tumor
-0.7
463
Tumor
-0.7
536
Normal
-0.7
977
Tumor
-0.7
387
Tumor
-0.7
443
Tumor
-0.7
861
Tumor
-0.7
187
Tumor
-0.7
957
Tumor
-0.7
497
Tumor
-0.7
953
Tumor
-0.7
277
Tumor
-0.8
147
Tumor
-0.8
477
Tumor
-0.8
923
Tumor
-0.8
943
Tumor
-0.8
171
Tumor
-0.8
647
Tumor
-0.8
413
Tumor
-0.8
311
Tumor
-0.9
357
Tumor
-0.9
851
Tumor
-0.9
1013
Tumor
-0.9
917
Tumor
-0.9
185
Tumor
-0.9
391
Tumor
-0.9
367
Tumor
-0.9
963
Tumor
-0.9
553
Tumor
-0.9
363
Tumor
-1.0
447
Tumor
-1.0
1025
Tumor
-1.0
285
Tumor
-1.0
715
Tumor
-1.0
131
Tumor
-1.0
1015
Tumor
-1.0
283
Tumor
-1.0
271
Tumor
-1.0
221
Tumor
-1.1
535
Tumor
-1.1
557
Tumor
-1.1
937
Tumor
-1.1
331
Tumor
-1.1
877
Tumor
-1.1
435
Tumor
-1.1
355
Tumor
-1.1
341
Tumor
-1.1
665
Tumor
-1.1
227
Tumor
-1.1
883
Tumor
-1.2
921
Tumor
-1.2
983
Tumor
-1.2
727
Tumor
-1.2
123
Tumor
-1.2
815
Tumor
-1.2
395
Tumor
-1.2
471
Tumor
-1.3
697
Tumor
-1.3
713
Tumor
-1.3
975
Tumor
-1.3
671
Tumor
-1.3
881
Tumor
-1.3
1021
Tumor
-1.3
483
Tumor
-1.3
724
Normal
-1.4
661
Tumor
-1.4
351
Tumor
-1.4
641
Tumor
-1.4
743
Tumor
-1.4
385
Tumor
-1.4
545
Tumor
-1.5
493
Tumor
-1.5
473
Tumor
-1.5
967
Tumor
-1.5
965
Tumor
-1.6
817
Tumor
-1.6
1031
Tumor
-1.6
211
Tumor
-1.7
951
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.