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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYAL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
288.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
274.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
222.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
180.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
161.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
160.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
152.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
141.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
140.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
138.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
132.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
131.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
124.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
124.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
122.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
122.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
121.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
120.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
115.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
115.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
113.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
112.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
110.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
110.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
110.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
107.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
107.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
105.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
104.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
104.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
101.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
99.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
99.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
99.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
99.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
98.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
98.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
98.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
97.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
97.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
97.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
96.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
95.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
95.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
94.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
93.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
92.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
92.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
92.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
92.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
91.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
90.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
90.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
90.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
89.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
87.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
87.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
86.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
86.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
85.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
85.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
85.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
85.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
85.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
85.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
85.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
85.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
84.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
84.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
83.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
81.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
81.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
81.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
81.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
80.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
80.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
79.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
79.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
79.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
79.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
78.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
78.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
77.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
76.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
76.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
76.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
75.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
75.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
75.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
74.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
74.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
74.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
74.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
73.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
73.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
73.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
73.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
72.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
71.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
70.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
70.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
69.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
69.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
69.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
68.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
68.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
67.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
66.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
66.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
66.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
66.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
66.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
65.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
65.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
65.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
65.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
64.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
64.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
64.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
62.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
62.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
62.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
61.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
60.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
60.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
60.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
59.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
59.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
59.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
58.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
58.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
58.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
58.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
58.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
58.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
57.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
57.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
57.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
55.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
55.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
53.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
51.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
51.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
51.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
50.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
49.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
49.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
49.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
48.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
47.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
45.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
45.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
43.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
40.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
40.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
36.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HYAL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.6
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
305.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
300.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
297.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
214.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
193.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
193.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
188.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
176.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
175.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
174.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
169.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
168.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
156.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
156.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
153.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
151.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
149.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
147.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
146.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
146.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
142.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
137.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
136.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
134.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
133.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
131.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
131.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
130.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
128.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
126.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
125.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
120.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
120.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
119.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
119.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
118.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
116.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
114.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
112.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
112.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
109.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
107.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
105.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
104.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
104.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
102.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
101.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
101.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
101.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
98.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
97.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
96.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
96.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
96.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
94.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
93.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
93.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
92.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
92.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
91.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
91.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
91.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
90.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
90.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
87.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
86.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
86.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
86.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
85.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
83.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
83.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
83.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
82.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
82.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
80.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
79.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
78.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
78.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
77.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
77.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
75.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
75.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
74.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
74.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
74.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
72.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
72.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
72.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
72.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
71.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
71.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
70.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
69.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
69.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
69.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
67.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
65.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
65.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
65.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
65.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
65.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
65.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
64.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
64.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
63.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
62.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
62.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
62.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
61.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
61.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
60.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
58.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
58.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
58.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
56.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
56.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
56.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
54.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
51.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
51.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
51.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
50.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
48.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
45.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
314
Normal
1.0
413
Tumor
0.9
137
Tumor
0.8
618
Normal
0.8
642
Normal
0.7
616
Normal
0.6
365
Tumor
0.6
278
Normal
0.6
628
Normal
0.6
813
Tumor
0.6
393
Tumor
0.6
332
Normal
0.6
388
Normal
0.6
376
Normal
0.6
368
Normal
0.6
391
Tumor
0.6
298
Normal
0.6
394
Normal
0.5
392
Normal
0.5
128
Normal
0.5
342
Normal
0.5
777
Tumor
0.5
366
Normal
0.5
466
Normal
0.5
516
Normal
0.5
312
Normal
0.5
358
Normal
0.5
361
Tumor
0.5
362
Normal
0.5
313
Tumor
0.5
1022
Normal
0.4
384
Normal
0.4
426
Normal
0.4
636
Normal
0.4
452
Normal
0.4
627
Tumor
0.4
227
Tumor
0.4
354
Normal
0.4
132
Normal
0.4
422
Normal
0.4
462
Normal
0.4
352
Normal
0.4
436
Normal
0.4
526
Normal
0.4
648
Normal
0.4
114
Normal
0.4
463
Tumor
0.4
1042
Normal
0.4
451
Tumor
0.4
866
Normal
0.4
1032
Normal
0.4
864
Normal
0.4
514
Normal
0.4
482
Normal
0.4
464
Normal
0.3
428
Normal
0.3
432
Normal
0.3
513
Tumor
0.3
192
Normal
0.3
111
Normal
0.3
863
Tumor
0.3
456
Normal
0.3
474
Normal
0.3
465
Tumor
0.3
414
Normal
0.3
356
Normal
0.3
1026
Normal
0.3
938
Normal
0.3
375
Tumor
0.3
912
Normal
0.3
1028
Normal
0.3
387
Tumor
0.3
124
Normal
0.3
126
Normal
0.3
518
Normal
0.3
435
Tumor
0.3
914
Normal
0.3
956
Normal
0.2
258
Normal
0.2
423
Tumor
0.2
557
Tumor
0.2
142
Normal
0.2
433
Tumor
0.2
944
Normal
0.2
448
Normal
0.2
446
Normal
0.2
224
Normal
0.2
171
Tumor
0.2
444
Normal
0.2
868
Normal
0.2
1046
Normal
0.2
386
Normal
0.2
882
Normal
0.2
363
Tumor
0.2
286
Normal
0.2
922
Normal
0.2
344
Normal
0.2
698
Normal
0.2
353
Tumor
0.2
328
Normal
0.2
222
Normal
0.2
746
Normal
0.2
468
Normal
0.2
954
Normal
0.2
424
Normal
0.2
824
Normal
0.2
136
Normal
0.2
396
Normal
0.2
697
Tumor
0.2
284
Normal
0.2
666
Normal
0.1
814
Normal
0.1
272
Normal
0.1
127
Tumor
0.1
261
Tumor
0.1
277
Tumor
0.1
481
Tumor
0.1
1041
Tumor
0.1
196
Normal
0.1
881
Tumor
0.1
1016
Normal
0.1
713
Tumor
0.1
1043
Tumor
0.1
958
Normal
0.1
113
Tumor
0.1
327
Tumor
0.1
421
Tumor
0.1
212
Normal
0.1
953
Tumor
0.1
862
Normal
0.1
341
Tumor
0.1
955
Tumor
0.1
515
Tumor
0.1
412
Normal
0.1
395
Tumor
0.1
357
Tumor
0.1
964
Normal
0.1
742
Normal
0.1
884
Normal
0.1
364
Normal
0.1
857
Tumor
0.1
112
Tumor
0.1
484
Normal
0.1
494
Normal
0.1
641
Tumor
0.1
1044
Normal
0.1
217
Tumor
0.0
818
Normal
0.0
926
Normal
0.0
434
Normal
0.0
228
Normal
0.0
883
Tumor
0.0
976
Normal
0.0
472
Normal
0.0
874
Normal
0.0
615
Tumor
0.0
816
Normal
0.0
517
Tumor
0.0
262
Normal
0.0
416
Normal
0.0
878
Normal
0.0
478
Normal
0.0
981
Tumor
0.0
664
Normal
0.0
778
Normal
0.0
138
Normal
0.0
937
Tumor
0.0
662
Normal
0.0
968
Normal
0.0
852
Normal
0.0
257
Tumor
0.0
715
Tumor
0.0
455
Tumor
0.0
982
Normal
0.0
672
Normal
0.0
214
Normal
0.0
351
Tumor
-0.1
858
Normal
-0.1
461
Tumor
-0.1
172
Normal
-0.1
195
Tumor
-0.1
877
Tumor
-0.1
745
Tumor
-0.1
1014
Normal
-0.1
524
Normal
-0.1
383
Tumor
-0.1
218
Normal
-0.1
756
Normal
-0.1
232
Normal
-0.1
267
Tumor
-0.1
546
Normal
-0.1
984
Normal
-0.1
568
Normal
-0.1
471
Tumor
-0.1
268
Normal
-0.1
534
Normal
-0.1
231
Tumor
-0.1
918
Normal
-0.1
147
Tumor
-0.1
574
Normal
-0.1
297
Tumor
-0.1
723
Tumor
-0.1
554
Normal
-0.1
148
Normal
-0.1
916
Normal
-0.1
617
Tumor
-0.1
223
Tumor
-0.1
331
Tumor
-0.1
564
Normal
-0.2
523
Tumor
-0.2
536
Normal
-0.2
467
Tumor
-0.2
921
Tumor
-0.2
741
Tumor
-0.2
123
Tumor
-0.2
1045
Tumor
-0.2
714
Normal
-0.2
343
Tumor
-0.2
411
Tumor
-0.2
738
Normal
-0.2
915
Tumor
-0.2
696
Normal
-0.2
186
Normal
-0.2
162
Normal
-0.2
815
Tumor
-0.2
1015
Tumor
-0.2
367
Tumor
-0.2
538
Normal
-0.2
952
Normal
-0.2
744
Normal
-0.2
477
Tumor
-0.2
213
Tumor
-0.2
786
Normal
-0.2
913
Tumor
-0.3
161
Tumor
-0.3
924
Normal
-0.3
445
Tumor
-0.3
635
Tumor
-0.3
188
Normal
-0.3
1025
Tumor
-0.3
572
Normal
-0.3
146
Normal
-0.3
483
Tumor
-0.3
488
Normal
-0.3
861
Tumor
-0.3
978
Normal
-0.3
665
Tumor
-0.3
533
Tumor
-0.3
671
Tumor
-0.3
967
Tumor
-0.3
145
Tumor
-0.3
943
Tumor
-0.3
125
Tumor
-0.3
925
Tumor
-0.3
185
Tumor
-0.3
415
Tumor
-0.3
571
Tumor
-0.3
728
Normal
-0.3
716
Normal
-0.3
977
Tumor
-0.3
443
Tumor
-0.4
525
Tumor
-0.4
191
Tumor
-0.4
187
Tumor
-0.4
755
Tumor
-0.4
983
Tumor
-0.4
1013
Tumor
-0.4
663
Tumor
-0.4
867
Tumor
-0.4
686
Normal
-0.4
528
Normal
-0.4
558
Normal
-0.4
498
Normal
-0.4
851
Tumor
-0.4
447
Tumor
-0.4
221
Tumor
-0.4
1027
Tumor
-0.4
966
Normal
-0.4
975
Tumor
-0.5
563
Tumor
-0.5
573
Tumor
-0.5
647
Tumor
-0.5
743
Tumor
-0.5
685
Tumor
-0.5
493
Tumor
-0.5
141
Tumor
-0.5
492
Normal
-0.5
311
Tumor
-0.5
285
Tumor
-0.5
567
Tumor
-0.5
873
Tumor
-0.5
355
Tumor
-0.5
727
Tumor
-0.5
271
Tumor
-0.5
131
Tumor
-0.6
817
Tumor
-0.6
911
Tumor
-0.6
431
Tumor
-0.6
1031
Tumor
-0.6
923
Tumor
-0.6
553
Tumor
-0.6
491
Tumor
-0.6
785
Tumor
-0.6
527
Tumor
-0.7
1021
Tumor
-0.7
661
Tumor
-0.7
823
Tumor
-0.7
957
Tumor
-0.7
722
Normal
-0.7
963
Tumor
-0.8
427
Tumor
-0.8
917
Tumor
-0.8
721
Tumor
-0.8
135
Tumor
-0.8
695
Tumor
-0.9
537
Tumor
-0.9
385
Tumor
-0.9
283
Tumor
-0.9
865
Tumor
-0.9
951
Tumor
-1.0
535
Tumor
-1.0
497
Tumor
-1.0
737
Tumor
-1.0
545
Tumor
-1.0
965
Tumor
-1.1
724
Normal
-1.2
473
Tumor
-1.3
211
Tumor
-1.3
425
Tumor
-1.5
487
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
