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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCHE is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
892.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
262.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
212.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
183.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
180.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
161.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
155.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
150.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
145.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
144.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
142.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
142.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
137.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
134.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
133.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
132.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
128.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
128.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
126.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
126.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
116.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
115.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
110.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
109.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
108.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
106.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
104.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
104.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
98.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
96.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
94.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
93.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
85.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
84.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
84.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
84.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
81.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
80.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
78.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
77.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
77.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
77.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
77.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
77.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
76.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
76.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
74.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
73.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
73.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
73.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
73.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
71.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
70.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
70.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
69.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
68.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
66.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
65.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
65.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
63.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
60.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
60.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
58.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
58.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
58.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
56.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
54.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
54.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
53.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
51.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
50.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
48.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
48.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
48.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
45.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
43.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
33.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCHE is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
231
Samples
Sample
Description
TPM
DO50808
0 years, male, NA, stage:2, alive, 570 days
106.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
104.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
99.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
92.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
87.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
83.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
80.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
79.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
77.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
77.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
72.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
68.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
66.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
65.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
62.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
58.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
58.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
55.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
47.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
46.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
45.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.3
983
Tumor
1.8
517
Tumor
1.3
342
Normal
1.2
663
Tumor
1.0
815
Tumor
0.9
484
Normal
0.9
186
Normal
0.9
1032
Normal
0.9
746
Normal
0.8
818
Normal
0.8
744
Normal
0.8
376
Normal
0.8
462
Normal
0.8
356
Normal
0.8
424
Normal
0.8
882
Normal
0.8
742
Normal
0.8
1022
Normal
0.7
328
Normal
0.7
952
Normal
0.7
698
Normal
0.7
1026
Normal
0.7
414
Normal
0.7
824
Normal
0.7
466
Normal
0.7
938
Normal
0.7
858
Normal
0.7
786
Normal
0.7
472
Normal
0.7
428
Normal
0.6
192
Normal
0.6
148
Normal
0.6
364
Normal
0.6
128
Normal
0.6
912
Normal
0.6
944
Normal
0.6
368
Normal
0.6
363
Tumor
0.6
413
Tumor
0.6
298
Normal
0.6
488
Normal
0.6
1046
Normal
0.6
354
Normal
0.6
314
Normal
0.6
518
Normal
0.6
132
Normal
0.6
756
Normal
0.6
487
Tumor
0.5
528
Normal
0.5
214
Normal
0.5
358
Normal
0.5
664
Normal
0.5
196
Normal
0.5
142
Normal
0.5
922
Normal
0.5
392
Normal
0.5
672
Normal
0.5
878
Normal
0.5
1044
Normal
0.5
162
Normal
0.5
482
Normal
0.5
778
Normal
0.5
714
Normal
0.5
546
Normal
0.5
777
Tumor
0.5
436
Normal
0.5
696
Normal
0.5
1016
Normal
0.5
955
Tumor
0.5
572
Normal
0.5
146
Normal
0.5
388
Normal
0.5
534
Normal
0.5
172
Normal
0.4
982
Normal
0.4
864
Normal
0.4
111
Normal
0.4
332
Normal
0.4
1014
Normal
0.4
666
Normal
0.4
648
Normal
0.4
866
Normal
0.4
394
Normal
0.4
723
Tumor
0.4
814
Normal
0.4
426
Normal
0.4
137
Tumor
0.4
113
Tumor
0.4
926
Normal
0.4
222
Normal
0.4
448
Normal
0.4
968
Normal
0.4
984
Normal
0.4
862
Normal
0.4
227
Tumor
0.4
387
Tumor
0.4
738
Normal
0.4
232
Normal
0.3
564
Normal
0.3
868
Normal
0.3
914
Normal
0.3
686
Normal
0.3
278
Normal
0.3
344
Normal
0.3
494
Normal
0.3
568
Normal
0.3
863
Tumor
0.3
722
Normal
0.3
224
Normal
0.3
367
Tumor
0.3
618
Normal
0.3
422
Normal
0.3
218
Normal
0.3
554
Normal
0.3
258
Normal
0.3
785
Tumor
0.3
516
Normal
0.3
366
Normal
0.3
384
Normal
0.3
136
Normal
0.3
642
Normal
0.3
474
Normal
0.3
124
Normal
0.3
355
Tumor
0.3
964
Normal
0.2
958
Normal
0.2
352
Normal
0.2
884
Normal
0.2
432
Normal
0.2
312
Normal
0.2
616
Normal
0.2
662
Normal
0.2
464
Normal
0.2
716
Normal
0.2
286
Normal
0.2
728
Normal
0.2
755
Tumor
0.2
816
Normal
0.2
362
Normal
0.1
954
Normal
0.1
877
Tumor
0.1
284
Normal
0.1
1042
Normal
0.1
217
Tumor
0.1
574
Normal
0.1
114
Normal
0.1
978
Normal
0.1
416
Normal
0.1
131
Tumor
0.1
966
Normal
0.1
456
Normal
0.1
478
Normal
0.1
956
Normal
0.1
918
Normal
0.1
481
Tumor
0.1
386
Normal
0.1
921
Tumor
0.1
396
Normal
0.1
468
Normal
0.1
285
Tumor
0.1
976
Normal
0.1
412
Normal
0.1
1045
Tumor
0.1
212
Normal
0.1
526
Normal
0.1
452
Normal
0.0
188
Normal
0.0
125
Tumor
0.0
327
Tumor
0.0
695
Tumor
0.0
138
Normal
0.0
228
Normal
0.0
446
Normal
0.0
1028
Normal
0.0
852
Normal
-0.1
558
Normal
-0.1
636
Normal
-0.1
126
Normal
-0.1
127
Tumor
-0.1
617
Tumor
-0.1
813
Tumor
-0.1
434
Normal
-0.1
331
Tumor
-0.1
455
Tumor
-0.1
272
Normal
-0.1
445
Tumor
-0.1
444
Normal
-0.1
615
Tumor
-0.1
628
Normal
-0.1
365
Tumor
-0.1
262
Normal
-0.2
727
Tumor
-0.2
145
Tumor
-0.2
112
Tumor
-0.2
313
Tumor
-0.2
924
Normal
-0.2
391
Tumor
-0.2
191
Tumor
-0.2
514
Normal
-0.2
353
Tumor
-0.2
277
Tumor
-0.2
283
Tumor
-0.2
1031
Tumor
-0.2
981
Tumor
-0.2
916
Normal
-0.3
415
Tumor
-0.3
147
Tumor
-0.3
268
Normal
-0.3
383
Tumor
-0.3
857
Tumor
-0.3
351
Tumor
-0.3
423
Tumor
-0.3
538
Normal
-0.3
627
Tumor
-0.3
141
Tumor
-0.3
913
Tumor
-0.4
963
Tumor
-0.4
343
Tumor
-0.4
741
Tumor
-0.4
257
Tumor
-0.4
421
Tumor
-0.4
874
Normal
-0.4
195
Tumor
-0.4
185
Tumor
-0.4
477
Tumor
-0.4
463
Tumor
-0.4
361
Tumor
-0.4
498
Normal
-0.4
461
Tumor
-0.4
161
Tumor
-0.4
433
Tumor
-0.4
492
Normal
-0.4
267
Tumor
-0.5
393
Tumor
-0.5
1025
Tumor
-0.5
431
Tumor
-0.5
881
Tumor
-0.5
1043
Tumor
-0.5
213
Tumor
-0.5
671
Tumor
-0.5
967
Tumor
-0.5
977
Tumor
-0.5
435
Tumor
-0.5
271
Tumor
-0.5
221
Tumor
-0.5
187
Tumor
-0.6
883
Tumor
-0.6
443
Tumor
-0.6
261
Tumor
-0.6
745
Tumor
-0.6
123
Tumor
-0.6
135
Tumor
-0.6
465
Tumor
-0.6
297
Tumor
-0.7
357
Tumor
-0.7
567
Tumor
-0.7
497
Tumor
-0.7
524
Normal
-0.7
571
Tumor
-0.7
515
Tumor
-0.7
713
Tumor
-0.7
536
Normal
-0.8
573
Tumor
-0.8
491
Tumor
-0.8
724
Normal
-0.8
665
Tumor
-0.8
311
Tumor
-0.8
527
Tumor
-0.8
823
Tumor
-0.8
697
Tumor
-0.8
1015
Tumor
-0.8
873
Tumor
-0.8
447
Tumor
-0.8
427
Tumor
-0.8
911
Tumor
-0.8
341
Tumor
-0.8
171
Tumor
-0.8
661
Tumor
-0.8
375
Tumor
-0.9
867
Tumor
-0.9
223
Tumor
-0.9
563
Tumor
-0.9
395
Tumor
-0.9
715
Tumor
-0.9
471
Tumor
-0.9
647
Tumor
-0.9
721
Tumor
-0.9
915
Tumor
-1.0
533
Tumor
-1.0
553
Tumor
-1.0
473
Tumor
-1.0
737
Tumor
-1.0
451
Tumor
-1.0
925
Tumor
-1.0
535
Tumor
-1.0
1013
Tumor
-1.0
545
Tumor
-1.1
851
Tumor
-1.1
923
Tumor
-1.1
917
Tumor
-1.1
975
Tumor
-1.2
861
Tumor
-1.2
865
Tumor
-1.2
483
Tumor
-1.2
943
Tumor
-1.2
425
Tumor
-1.2
231
Tumor
-1.2
385
Tumor
-1.3
937
Tumor
-1.3
685
Tumor
-1.3
953
Tumor
-1.3
523
Tumor
-1.3
965
Tumor
-1.3
467
Tumor
-1.3
641
Tumor
-1.4
557
Tumor
-1.4
525
Tumor
-1.4
537
Tumor
-1.4
513
Tumor
-1.4
493
Tumor
-1.4
211
Tumor
-1.5
411
Tumor
-1.5
1021
Tumor
-1.5
817
Tumor
-1.6
951
Tumor
-1.6
1041
Tumor
-1.6
635
Tumor
-1.7
957
Tumor
-1.7
1027
Tumor
-1.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
