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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
176.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
129.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
124.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
122.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
121.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
119.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
115.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
114.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
111.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
110.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
108.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
107.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
105.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
105.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
104.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
104.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
104.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
104.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
103.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
101.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
100.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
97.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
92.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
90.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
90.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
89.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
89.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
87.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
87.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
86.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
85.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
85.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
84.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
84.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
81.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
81.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
81.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
81.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
80.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
79.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
79.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
79.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
79.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
78.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
78.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
76.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
75.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
75.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
75.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
74.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
74.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
74.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
74.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
72.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
72.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
72.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
72.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
71.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
71.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
71.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
70.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
70.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
69.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
69.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
68.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
68.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
68.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
67.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
67.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
66.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
66.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
65.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
64.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
63.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
63.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
63.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
63.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
62.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
62.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
62.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
61.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
61.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
61.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
60.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
60.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
58.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
57.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
57.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
57.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
57.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
57.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
55.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
55.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
54.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
53.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
53.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
51.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
51.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
51.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
50.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
50.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
49.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
49.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
49.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
48.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
48.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
48.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
46.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
46.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
44.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
43.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
42.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
41.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
37.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
37.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
36.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
36.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
35.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
34.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
78.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
72.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
61.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.2
554
Normal
1.2
473
Tumor
1.1
482
Normal
1.0
874
Normal
0.9
741
Tumor
0.9
976
Normal
0.8
966
Normal
0.8
1025
Tumor
0.7
147
Tumor
0.7
1043
Tumor
0.7
952
Normal
0.7
1027
Tumor
0.7
222
Normal
0.6
171
Tumor
0.6
483
Tumor
0.6
1021
Tumor
0.6
257
Tumor
0.6
343
Tumor
0.6
921
Tumor
0.6
128
Normal
0.6
137
Tumor
0.6
866
Normal
0.6
452
Normal
0.6
218
Normal
0.5
367
Tumor
0.5
617
Tumor
0.5
214
Normal
0.5
462
Normal
0.5
271
Tumor
0.5
858
Normal
0.5
915
Tumor
0.5
642
Normal
0.5
685
Tumor
0.5
744
Normal
0.5
111
Normal
0.5
528
Normal
0.5
491
Tumor
0.5
148
Normal
0.5
195
Tumor
0.5
363
Tumor
0.5
487
Tumor
0.5
258
Normal
0.5
737
Tumor
0.5
465
Tumor
0.5
125
Tumor
0.4
141
Tumor
0.4
523
Tumor
0.4
161
Tumor
0.4
114
Normal
0.4
124
Normal
0.4
436
Normal
0.4
568
Normal
0.4
262
Normal
0.3
232
Normal
0.3
861
Tumor
0.3
285
Tumor
0.3
564
Normal
0.3
376
Normal
0.3
278
Normal
0.3
298
Normal
0.3
981
Tumor
0.3
196
Normal
0.3
557
Tumor
0.3
186
Normal
0.3
574
Normal
0.3
497
Tumor
0.3
146
Normal
0.3
446
Normal
0.3
824
Normal
0.3
355
Tumor
0.3
618
Normal
0.3
192
Normal
0.3
272
Normal
0.3
746
Normal
0.3
518
Normal
0.3
911
Tumor
0.3
451
Tumor
0.3
313
Tumor
0.3
221
Tumor
0.3
113
Tumor
0.3
955
Tumor
0.3
636
Normal
0.3
493
Tumor
0.3
261
Tumor
0.3
738
Normal
0.3
865
Tumor
0.3
132
Normal
0.3
534
Normal
0.3
697
Tumor
0.3
126
Normal
0.3
342
Normal
0.3
914
Normal
0.3
191
Tumor
0.3
217
Tumor
0.3
963
Tumor
0.2
956
Normal
0.2
213
Tumor
0.2
635
Tumor
0.2
162
Normal
0.2
1013
Tumor
0.2
138
Normal
0.2
648
Normal
0.2
231
Tumor
0.2
414
Normal
0.2
816
Normal
0.2
862
Normal
0.2
745
Tumor
0.2
492
Normal
0.2
172
Normal
0.2
877
Tumor
0.2
352
Normal
0.2
977
Tumor
0.2
517
Tumor
0.2
268
Normal
0.2
188
Normal
0.2
535
Tumor
0.2
312
Normal
0.2
714
Normal
0.2
464
Normal
0.2
515
Tumor
0.2
553
Tumor
0.2
123
Tumor
0.2
925
Tumor
0.2
471
Tumor
0.2
957
Tumor
0.2
572
Normal
0.2
628
Normal
0.1
431
Tumor
0.1
136
Normal
0.1
867
Tumor
0.1
283
Tumor
0.1
777
Tumor
0.1
538
Normal
0.1
526
Normal
0.1
878
Normal
0.1
142
Normal
0.1
722
Normal
0.1
616
Normal
0.1
778
Normal
0.1
817
Tumor
0.1
185
Tumor
0.1
445
Tumor
0.1
223
Tumor
0.1
277
Tumor
0.1
1041
Tumor
0.1
516
Normal
0.1
488
Normal
0.1
112
Tumor
0.1
456
Normal
0.1
533
Tumor
0.1
434
Normal
0.1
484
Normal
0.1
375
Tumor
0.0
664
Normal
0.0
422
Normal
0.0
755
Tumor
0.0
435
Tumor
0.0
965
Tumor
0.0
558
Normal
0.0
211
Tumor
0.0
344
Normal
0.0
527
Tumor
0.0
823
Tumor
0.0
1016
Normal
0.0
362
Normal
0.0
286
Normal
0.0
358
Normal
0.0
494
Normal
0.0
463
Tumor
0.0
696
Normal
0.0
715
Tumor
0.0
432
Normal
0.0
698
Normal
0.0
525
Tumor
0.0
818
Normal
0.0
444
Normal
0.0
662
Normal
0.0
331
Tumor
0.0
361
Tumor
0.0
982
Normal
0.0
567
Tumor
0.0
546
Normal
0.0
1015
Tumor
0.0
723
Tumor
0.0
466
Normal
-0.1
864
Normal
-0.1
477
Tumor
-0.1
968
Normal
-0.1
353
Tumor
-0.1
513
Tumor
-0.1
426
Normal
-0.1
392
Normal
-0.1
366
Normal
-0.1
743
Tumor
-0.1
686
Normal
-0.1
145
Tumor
-0.1
727
Tumor
-0.1
537
Tumor
-0.1
1028
Normal
-0.1
984
Normal
-0.1
267
Tumor
-0.1
672
Normal
-0.1
666
Normal
-0.1
661
Tumor
-0.1
354
Normal
-0.1
563
Tumor
-0.1
958
Normal
-0.1
356
Normal
-0.1
368
Normal
-0.1
498
Normal
-0.1
615
Tumor
-0.1
852
Normal
-0.1
386
Normal
-0.1
387
Tumor
-0.1
975
Tumor
-0.1
351
Tumor
-0.1
647
Tumor
-0.1
332
Normal
-0.1
425
Tumor
-0.1
385
Tumor
-0.2
468
Normal
-0.2
393
Tumor
-0.2
428
Normal
-0.2
127
Tumor
-0.2
663
Tumor
-0.2
396
Normal
-0.2
863
Tumor
-0.2
415
Tumor
-0.2
742
Normal
-0.2
413
Tumor
-0.2
721
Tumor
-0.2
421
Tumor
-0.2
383
Tumor
-0.2
391
Tumor
-0.2
938
Normal
-0.2
474
Normal
-0.2
922
Normal
-0.2
937
Tumor
-0.2
571
Tumor
-0.2
412
Normal
-0.2
394
Normal
-0.2
716
Normal
-0.2
384
Normal
-0.2
545
Tumor
-0.2
884
Normal
-0.2
1031
Tumor
-0.2
627
Tumor
-0.2
524
Normal
-0.2
228
Normal
-0.2
713
Tumor
-0.2
923
Tumor
-0.2
944
Normal
-0.2
728
Normal
-0.3
514
Normal
-0.3
461
Tumor
-0.3
365
Tumor
-0.3
951
Tumor
-0.3
857
Tumor
-0.3
427
Tumor
-0.3
785
Tumor
-0.3
851
Tumor
-0.3
786
Normal
-0.3
881
Tumor
-0.3
665
Tumor
-0.3
187
Tumor
-0.3
964
Normal
-0.3
873
Tumor
-0.3
918
Normal
-0.3
1026
Normal
-0.3
327
Tumor
-0.3
395
Tumor
-0.3
573
Tumor
-0.3
388
Normal
-0.3
411
Tumor
-0.3
297
Tumor
-0.3
424
Normal
-0.3
472
Normal
-0.3
448
Normal
-0.3
341
Tumor
-0.3
815
Tumor
-0.4
1014
Normal
-0.4
671
Tumor
-0.4
924
Normal
-0.4
943
Tumor
-0.4
983
Tumor
-0.4
926
Normal
-0.4
882
Normal
-0.4
883
Tumor
-0.4
1022
Normal
-0.4
814
Normal
-0.4
868
Normal
-0.4
756
Normal
-0.4
227
Tumor
-0.4
455
Tumor
-0.4
423
Tumor
-0.5
443
Tumor
-0.5
314
Normal
-0.5
695
Tumor
-0.5
328
Normal
-0.5
478
Normal
-0.5
641
Tumor
-0.5
416
Normal
-0.5
724
Normal
-0.6
284
Normal
-0.6
433
Tumor
-0.6
135
Tumor
-0.6
916
Normal
-0.6
481
Tumor
-0.6
536
Normal
-0.6
212
Normal
-0.6
364
Normal
-0.6
1042
Normal
-0.7
1032
Normal
-0.7
967
Tumor
-0.7
813
Tumor
-0.7
311
Tumor
-0.7
953
Tumor
-0.7
357
Tumor
-0.7
913
Tumor
-0.7
954
Normal
-0.8
224
Normal
-0.8
467
Tumor
-0.8
978
Normal
-0.8
447
Tumor
-0.9
1046
Normal
-0.9
1044
Normal
-0.9
1045
Tumor
-1.1
917
Tumor
-1.1
912
Normal
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.