MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:81.2 nTPM
GTEx:16.6 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:59.1 nTPM
Mouse:34.2 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.3
2586 Male, age 75, left hemisphere 88.5
2219 Male, age 76, both hemispheres 77.5
2019 Male, age 18, unknown 77.4
1827 Male, age 72, unknown 76.3
2411 Female, age 72, unknown 69.2
1833 Male, age 53, unknown 66.4
2828 Female, age 72, unknown 65.4
1830 Male, age 51, unknown 65.3
1870 Female, age 42, unknown 64.6
2666 Male, age 74, left hemisphere 62.8
Dorsal raphe nucleus
nTPM: 66.4
2047 Male, age 72, unknown 73.4
2298 Female, age 72, unknown 66.7
2750 Male, age 76, both hemispheres 65.8
2016 Female, age 72, unknown 63.7
1828 Male, age 53, unknown 62.3
Inferior colliculus
nTPM: 81.2
2097 Female, age 72, unknown 87.5
2849 Male, age 72, unknown 81.1
1890 Male, age 53, unknown 78.4
1848 Female, age 42, unknown 77.6
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Periaquaductal grey, anterior
nTPM: 73.6
1947 Male, age 18, unknown 77.3
2502 Female, age 75, unknown 75.0
1795 Male, age 51, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 76.3
1840 Male, age 53, unknown 86.6
2464 Female, age 72, unknown 75.2
2850 Male, age 76, both hemispheres 73.6
1831 Male, age 72, unknown 70.0
Periaquaductal grey, lateral
nTPM: 64.4
2053 Male, age 18, unknown 68.5
2140 Male, age 76, both hemispheres 67.3
2272 Male, age 74, both hemispheres 57.4
Pretectal area
nTPM: 72.2
1816 Male, age 51, unknown 91.0
1944 Female, age 72, unknown 87.7
2007 Male, age 72, unknown 82.5
1815 Male, age 53, unknown 72.0
1817 Female, age 42, unknown 70.9
2224 Female, age 72, unknown 70.3
2316 Male, age 76, right hemisphere 69.4
2825 Male, age 18, unknown 68.9
2667 Female, age 75, unknown 65.1
2407 Male, age 75, both hemispheres 58.9
2273 Male, age 74, both hemispheres 57.8
Red nucleus
nTPM: 65.4
2725 Female, age 75, unknown 74.4
1954 Female, age 42, unknown 71.7
2588 Male, age 74, left hemisphere 71.5
2584 Male, age 75, left hemisphere 69.0
2785 Male, age 18, unknown 67.0
1821 Female, age 72, unknown 65.8
2503 Female, age 72, unknown 65.6
2823 Male, age 76, right hemisphere 62.0
1904 Male, age 53, unknown 60.8
1865 Male, age 51, unknown 60.2
2769 Male, age 72, unknown 59.2
2227 Male, age 72, unknown 57.7
Substantia nigra
nTPM: 72.5
2241 Male, age 72, unknown 84.7
1889 Female, age 72, unknown 82.0
1941 Male, age 53, unknown 81.7
2409 Female, age 72, unknown 73.6
1916 Female, age 42, unknown 73.2
2583 Male, age 75, right hemisphere 71.9
2590 Female, age 75, unknown 67.8
1851 Male, age 51, unknown 66.8
2665 Male, age 74, both hemispheres 66.8
2699 Male, age 18, unknown 56.1
Superior colliculus
nTPM: 71.8
2087 Female, age 72, unknown 81.7
1895 Male, age 76, right hemisphere 79.5
1839 Male, age 51, unknown 75.9
2261 Male, age 18, unknown 75.5
2664 Male, age 75, both hemispheres 74.8
2668 Female, age 75, unknown 71.7
1796 Male, age 53, unknown 71.2
2587 Male, age 74, left hemisphere 66.7
1913 Female, age 42, unknown 61.2
1995 Male, age 72, unknown 59.7
Ventral tegmental area
nTPM: 66.6
2218 Male, age 76, both hemispheres 73.5
1915 Female, age 42, unknown 70.0
1942 Male, age 51, unknown 66.8
2021 Male, age 53, unknown 64.7
2410 Female, age 72, unknown 63.8
2223 Female, age 72, unknown 60.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 139

Max nTPM: 24.5
Min nTPM: 10.9
Std nTPM: 2.7
Median nTPM: 16.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 23.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 21.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.3
FF:10158-103A5 76 years, female 61.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.3
Samples: 4

Max nTPM: 53.8
Min nTPM: 46.4
Sample A Female 53.8
Sample B Female 48.2
Sample C Male 52.8
Sample D Male 46.4
Midbrain
nTPM: 59.2
Samples: 4

Max nTPM: 72.9
Min nTPM: 50.5
Sample A Female 50.5
Sample B Female 53.7
Sample C Male 72.9
Sample D Male 59.5
Periaqueductal gray
nTPM: 49.2
Samples: 3

Max nTPM: 50.3
Min nTPM: 48.1
Sample B Female 48.1
Sample C Male 50.3
Sample D Male 49.3
Superior colliculi
nTPM: 57.5
Samples: 4

Max nTPM: 67.4
Min nTPM: 49.0
Sample A Female 53.9
Sample B Female 49.0
Sample C Male 67.4
Sample D Male 59.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 36.9
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 36.9
Sample C Female 36.4
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
1927 Antisense, RP_Baylor_103094, Mouse strain C57BL/6J (56 days, male) 2.9
79591689 Antisense, RP_071204_04_H03, Mouse strain C57BL/6J (56 days, male) 0.9
79904160 Antisense, RP_071204_04_H03, Mouse strain C57BL/6J (56 days, male) 0.6

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