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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Assigned HPA protein class(es) for the encoded protein(s).
Cancer-related genes Disease related genes Enzymes Human disease related genes Plasma proteins Potential drug targets
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
3
Cytoband
p25.3
Chromosome location (bp)
9749944 - 9788219
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
Useful information about the protein provided by UniProt.
DNA repair enzyme that incises DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (FAPY) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion....show less
Molecular function (UniProt)i
Keywords assigned by UniProt to proteins due to their particular molecular function.
Keywords assigned by UniProt to proteins because they are involved in a particular biological process.
DNA damage, DNA repair
Gene summary (Entrez)i
Useful information about the gene from Entrez
This gene encodes the enzyme responsible for the excision of 8-oxoguanine, a mutagenic base byproduct which occurs as a result of exposure to reactive oxygen. The action of this enzyme includes lyase activity for chain cleavage. Alternative splicing of the C-terminal region of this gene classifies splice variants into two major groups, type 1 and type 2, depending on the last exon of the sequence. Type 1 alternative splice variants end with exon 7 and type 2 end with exon 8. All variants share the N-terminal region in common, which contains a mitochondrial targeting signal that is essential for mitochondrial localization. Many alternative splice variants for this gene have been described, but the full-length nature for every variant has not been determined. [provided by RefSeq, Aug 2008]...show less
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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E5KPN0 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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E5KPM7 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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E5KPM5 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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E5KPN1 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
H7BXZ1 [Direct mapping] DNA-(apurinic or apyrimidinic site) lyase E5KPM6 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Cancers Cancers of the urinary system Protein evidence (Kim et al 2014)
Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
DeepTMHMM predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Cancers Cancers of the urinary system
THUMBUP predicted membrane proteins Phobius predicted secreted proteins DeepSig predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Cancers Cancers of the urinary system
O15527 [Direct mapping] N-glycosylase/DNA lyase 8-oxoguanine DNA glycosylase DNA-(apurinic or apyrimidinic site) lyase
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E5KPM9 [Target identity:100%; Query identity:100%] DNA-(apurinic or apyrimidinic site) lyase
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Enzymes ENZYME proteins Lyases Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Disease related genes Potential drug targets Human disease related genes Cancers Cancers of the urinary system Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014)
SCAMPI predicted membrane proteins Phobius predicted secreted proteins Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Cancers Cancers of the urinary system
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GO:0003684[damaged DNA binding] GO:0003824[catalytic activity] GO:0006281[DNA repair] GO:0006284[base-excision repair] GO:0006289[nucleotide-excision repair] GO:0008534[oxidized purine nucleobase lesion DNA N-glycosylase activity] GO:0034039[8-oxo-7,8-dihydroguanine DNA N-glycosylase activity]