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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM162A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
101.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
306.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
300.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
300.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
294.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
273.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
268.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
261.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
255.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
254.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
244.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
242.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
238.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
234.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
232.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
227.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
225.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
221.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
217.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
217.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
215.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
214.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
213.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
211.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
210.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
207.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
205.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
204.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
199.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
194.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
192.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
185.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
180.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
178.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
177.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
176.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
176.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
175.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
175.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
173.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
171.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
169.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
168.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
161.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
160.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
157.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
155.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
152.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
152.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
151.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
150.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
149.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
146.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
144.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
144.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
143.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
141.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
140.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
139.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
136.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
136.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
135.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
134.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
132.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
132.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
131.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
130.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
130.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
129.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
129.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
129.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
129.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
129.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
128.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
128.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
125.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
125.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
125.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
125.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
125.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
124.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
123.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
123.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
122.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
122.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
122.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
122.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
121.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
121.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
121.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
120.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
120.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
120.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
119.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
118.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
118.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
118.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
117.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
117.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
117.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
117.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
117.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
116.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
115.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
115.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
115.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
115.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
113.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
113.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
113.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
113.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
113.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
112.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
112.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
110.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
110.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
109.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
109.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
109.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
108.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
108.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
106.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
106.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
105.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
105.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
105.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
104.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
104.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
104.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
104.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
104.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
104.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
104.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
104.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
103.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
102.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
101.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
101.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
101.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
101.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
100.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
100.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
100.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
100.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
99.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
99.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
99.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
99.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
98.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
98.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
98.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
98.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
97.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
96.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
96.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
96.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
96.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
95.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
95.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
94.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
93.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
93.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
93.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
93.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
93.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
92.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
92.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
92.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
92.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
92.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
92.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
92.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
91.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
91.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
89.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
88.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
87.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
87.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
87.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
87.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
86.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
85.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
85.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
84.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
84.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
83.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
83.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
82.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
82.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
82.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
82.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
81.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
81.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
81.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
81.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
80.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
80.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
79.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
79.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
79.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
78.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
78.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
77.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
77.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
77.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
77.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
76.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
76.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
75.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
74.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
74.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
74.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
74.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
74.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
74.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
73.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
73.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
73.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
73.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
73.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
72.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
72.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
72.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
71.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
70.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
70.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
70.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
69.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
69.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
68.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
68.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
68.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
67.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
67.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
67.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
67.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
67.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
66.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
66.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
66.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
66.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
66.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
66.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
65.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
65.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
64.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
64.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
63.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
63.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
63.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
63.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
62.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
61.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
61.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
61.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
60.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
60.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
60.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
59.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
59.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
59.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
59.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
58.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
58.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
57.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
57.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
56.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
55.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
55.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
52.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
51.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
47.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM162A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
94.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
403.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
339.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
289.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
279.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
278.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
267.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
265.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
259.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
251.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
232.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
227.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
222.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
222.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
194.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
177.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
170.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
164.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
161.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
161.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
150.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
150.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
149.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
148.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
147.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
146.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
145.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
143.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
143.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
142.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
141.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
141.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
140.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
140.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
140.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
139.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
138.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
138.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
137.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
134.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
133.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
133.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
129.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
129.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
129.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
126.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
122.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
121.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
121.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
120.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
120.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
119.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
119.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
118.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
116.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
115.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
114.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
112.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
111.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
111.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
110.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
108.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
107.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
105.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
105.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
105.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
105.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
104.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
104.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
104.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
104.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
103.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
103.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
103.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
102.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
102.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
102.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
101.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
100.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
98.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
98.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
96.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
96.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
95.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
95.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
95.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
94.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
93.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
92.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
92.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
92.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
91.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
91.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
90.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
90.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
89.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
88.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
88.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
88.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
87.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
87.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
86.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
85.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
85.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
83.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
83.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
83.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
83.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
82.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
82.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
82.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
81.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
81.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
80.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
80.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
80.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
79.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
79.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
79.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
78.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
78.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
78.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
78.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
77.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
77.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
77.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
76.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
76.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
75.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
74.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
73.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
72.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
71.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
70.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
70.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
69.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
69.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
69.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
69.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
68.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
68.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
67.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
67.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
66.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
66.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
65.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
65.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
64.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
62.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
61.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
61.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
60.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
60.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
59.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
59.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
59.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
58.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
57.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
57.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
56.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
55.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
54.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
50.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
49.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
48.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
47.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.8
627
Tumor
1.7
513
Tumor
1.7
745
Tumor
1.5
571
Tumor
1.5
1041
Tumor
1.5
1027
Tumor
1.5
227
Tumor
1.5
713
Tumor
1.4
363
Tumor
1.4
923
Tumor
1.2
1045
Tumor
1.0
714
Normal
0.9
484
Normal
0.9
648
Normal
0.9
1032
Normal
0.8
922
Normal
0.8
477
Tumor
0.8
553
Tumor
0.8
912
Normal
0.8
481
Tumor
0.7
554
Normal
0.7
882
Normal
0.7
862
Normal
0.7
472
Normal
0.7
534
Normal
0.7
636
Normal
0.7
1026
Normal
0.7
616
Normal
0.7
958
Normal
0.7
944
Normal
0.7
924
Normal
0.7
921
Tumor
0.6
911
Tumor
0.6
756
Normal
0.6
786
Normal
0.6
546
Normal
0.6
328
Normal
0.6
443
Tumor
0.6
785
Tumor
0.6
465
Tumor
0.6
448
Normal
0.6
361
Tumor
0.6
746
Normal
0.6
868
Normal
0.6
214
Normal
0.6
884
Normal
0.5
436
Normal
0.5
723
Tumor
0.5
938
Normal
0.5
364
Normal
0.5
452
Normal
0.5
738
Normal
0.5
615
Tumor
0.5
926
Normal
0.5
824
Normal
0.5
232
Normal
0.5
518
Normal
0.5
686
Normal
0.5
851
Tumor
0.5
563
Tumor
0.5
483
Tumor
0.5
1025
Tumor
0.5
196
Normal
0.5
1022
Normal
0.5
818
Normal
0.5
1042
Normal
0.4
628
Normal
0.4
741
Tumor
0.4
1014
Normal
0.4
564
Normal
0.4
261
Tumor
0.4
482
Normal
0.4
1046
Normal
0.4
222
Normal
0.4
258
Normal
0.4
572
Normal
0.4
568
Normal
0.4
716
Normal
0.4
954
Normal
0.4
516
Normal
0.4
466
Normal
0.4
426
Normal
0.4
414
Normal
0.4
278
Normal
0.4
342
Normal
0.4
978
Normal
0.4
298
Normal
0.4
968
Normal
0.4
722
Normal
0.4
955
Tumor
0.4
956
Normal
0.4
132
Normal
0.4
228
Normal
0.4
641
Tumor
0.4
267
Tumor
0.4
1016
Normal
0.4
416
Normal
0.4
356
Normal
0.4
353
Tumor
0.4
664
Normal
0.4
858
Normal
0.3
526
Normal
0.3
695
Tumor
0.3
113
Tumor
0.3
866
Normal
0.3
852
Normal
0.3
128
Normal
0.3
567
Tumor
0.3
422
Normal
0.3
1044
Normal
0.3
366
Normal
0.3
462
Normal
0.3
137
Tumor
0.3
488
Normal
0.3
537
Tumor
0.3
698
Normal
0.3
823
Tumor
0.3
385
Tumor
0.3
982
Normal
0.3
221
Tumor
0.3
388
Normal
0.3
728
Normal
0.3
412
Normal
0.3
474
Normal
0.3
1028
Normal
0.3
424
Normal
0.3
494
Normal
0.3
362
Normal
0.3
666
Normal
0.3
358
Normal
0.3
272
Normal
0.3
428
Normal
0.3
966
Normal
0.3
354
Normal
0.3
376
Normal
0.3
314
Normal
0.3
332
Normal
0.3
618
Normal
0.3
172
Normal
0.3
916
Normal
0.2
514
Normal
0.2
138
Normal
0.2
1043
Tumor
0.2
421
Tumor
0.2
142
Normal
0.2
478
Normal
0.2
1031
Tumor
0.2
878
Normal
0.2
162
Normal
0.2
111
Normal
0.2
524
Normal
0.2
487
Tumor
0.2
737
Tumor
0.2
212
Normal
0.2
186
Normal
0.2
742
Normal
0.2
864
Normal
0.2
867
Tumor
0.2
262
Normal
0.2
984
Normal
0.2
976
Normal
0.2
662
Normal
0.2
952
Normal
0.2
918
Normal
0.2
915
Tumor
0.2
468
Normal
0.2
981
Tumor
0.2
432
Normal
0.2
136
Normal
0.2
312
Normal
0.2
411
Tumor
0.2
558
Normal
0.1
515
Tumor
0.1
914
Normal
0.1
396
Normal
0.1
617
Tumor
0.1
218
Normal
0.1
815
Tumor
0.1
937
Tumor
0.1
464
Normal
0.1
145
Tumor
0.1
284
Normal
0.1
431
Tumor
0.1
285
Tumor
0.1
231
Tumor
0.1
148
Normal
0.1
574
Normal
0.1
286
Normal
0.1
386
Normal
0.1
365
Tumor
0.1
394
Normal
0.1
778
Normal
0.0
446
Normal
0.0
883
Tumor
0.0
352
Normal
0.0
525
Tumor
0.0
873
Tumor
0.0
861
Tumor
0.0
816
Normal
0.0
114
Normal
0.0
433
Tumor
0.0
744
Normal
0.0
413
Tumor
0.0
423
Tumor
0.0
857
Tumor
0.0
642
Normal
0.0
663
Tumor
0.0
344
Normal
0.0
224
Normal
0.0
471
Tumor
0.0
257
Tumor
0.0
384
Normal
0.0
964
Normal
-0.1
951
Tumor
-0.1
146
Normal
-0.1
415
Tumor
-0.1
392
Normal
-0.1
874
Normal
-0.1
456
Normal
-0.1
696
Normal
-0.1
557
Tumor
-0.1
473
Tumor
-0.1
268
Normal
-0.1
715
Tumor
-0.1
665
Tumor
-0.1
368
Normal
-0.1
191
Tumor
-0.1
192
Normal
-0.1
188
Normal
-0.2
492
Normal
-0.2
777
Tumor
-0.2
491
Tumor
-0.2
126
Normal
-0.2
721
Tumor
-0.2
327
Tumor
-0.2
685
Tumor
-0.2
355
Tumor
-0.2
451
Tumor
-0.2
913
Tumor
-0.2
161
Tumor
-0.3
957
Tumor
-0.3
383
Tumor
-0.3
435
Tumor
-0.3
517
Tumor
-0.3
953
Tumor
-0.3
528
Normal
-0.3
223
Tumor
-0.3
536
Normal
-0.3
538
Normal
-0.3
983
Tumor
-0.3
124
Normal
-0.3
444
Normal
-0.3
727
Tumor
-0.4
367
Tumor
-0.4
498
Normal
-0.4
434
Normal
-0.4
387
Tumor
-0.4
865
Tumor
-0.4
112
Tumor
-0.4
533
Tumor
-0.4
461
Tumor
-0.4
195
Tumor
-0.4
341
Tumor
-0.4
697
Tumor
-0.4
425
Tumor
-0.4
391
Tumor
-0.4
1013
Tumor
-0.5
965
Tumor
-0.5
217
Tumor
-0.5
672
Normal
-0.5
375
Tumor
-0.5
393
Tumor
-0.5
647
Tumor
-0.5
877
Tumor
-0.5
817
Tumor
-0.6
1021
Tumor
-0.6
977
Tumor
-0.6
395
Tumor
-0.6
447
Tumor
-0.6
813
Tumor
-0.6
297
Tumor
-0.6
313
Tumor
-0.7
213
Tumor
-0.7
185
Tumor
-0.7
1015
Tumor
-0.7
127
Tumor
-0.7
755
Tumor
-0.7
125
Tumor
-0.7
863
Tumor
-0.7
463
Tumor
-0.7
635
Tumor
-0.7
141
Tumor
-0.7
967
Tumor
-0.7
545
Tumor
-0.7
271
Tumor
-0.8
573
Tumor
-0.8
331
Tumor
-0.8
493
Tumor
-0.8
135
Tumor
-0.8
427
Tumor
-0.8
445
Tumor
-0.8
123
Tumor
-0.8
535
Tumor
-0.9
187
Tumor
-0.9
467
Tumor
-0.9
357
Tumor
-0.9
455
Tumor
-0.9
943
Tumor
-0.9
311
Tumor
-0.9
814
Normal
-0.9
881
Tumor
-1.0
975
Tumor
-1.0
277
Tumor
-1.0
211
Tumor
-1.0
497
Tumor
-1.0
917
Tumor
-1.1
671
Tumor
-1.1
743
Tumor
-1.1
523
Tumor
-1.2
131
Tumor
-1.2
351
Tumor
-1.2
171
Tumor
-1.2
147
Tumor
-1.3
527
Tumor
-1.3
283
Tumor
-1.4
963
Tumor
-1.5
343
Tumor
-1.5
724
Normal
-1.7
661
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.