We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.0
Number of samples
231
Samples
Sample
Description
TPM
DO50816
0 years, male, NA, stage:2, alive, 390 days
161.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
151.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
150.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
147.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
147.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
139.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
135.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
120.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
114.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
112.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
109.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
105.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
104.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
103.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
102.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
102.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
100.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
100.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
98.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
96.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
96.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
95.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
94.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
94.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
93.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
92.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
92.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
92.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
92.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
92.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
92.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
91.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
91.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
90.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
88.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
88.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
87.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
86.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
84.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
84.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
84.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
82.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
82.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
81.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
81.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
80.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
80.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
80.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
80.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
80.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
79.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
78.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
77.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
77.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
74.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
74.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
74.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
74.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
73.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
73.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
73.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
72.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
72.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
72.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
72.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
72.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
71.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
70.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
69.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
69.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
69.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
69.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
67.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
67.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
66.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
66.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
66.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
65.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
65.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
64.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
64.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
64.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
64.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
63.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
63.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
62.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
62.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
62.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
62.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
62.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
62.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
62.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
61.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
61.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
60.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
60.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
59.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
59.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
59.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
57.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
57.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
56.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
56.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
56.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
55.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
55.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
55.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
55.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
55.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
55.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
54.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
53.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
52.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
51.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
51.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
51.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
50.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
49.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
49.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
48.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
46.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
46.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
43.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
29.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
738
Normal
0.9
436
Normal
0.9
746
Normal
0.9
698
Normal
0.8
862
Normal
0.8
484
Normal
0.8
742
Normal
0.7
1026
Normal
0.7
342
Normal
0.7
952
Normal
0.7
222
Normal
0.7
128
Normal
0.7
1022
Normal
0.7
728
Normal
0.7
298
Normal
0.6
462
Normal
0.6
472
Normal
0.6
111
Normal
0.6
744
Normal
0.6
518
Normal
0.6
824
Normal
0.6
723
Tumor
0.6
914
Normal
0.6
172
Normal
0.6
816
Normal
0.6
714
Normal
0.6
132
Normal
0.6
466
Normal
0.6
648
Normal
0.6
924
Normal
0.6
695
Tumor
0.6
878
Normal
0.5
474
Normal
0.5
866
Normal
0.5
162
Normal
0.5
448
Normal
0.5
618
Normal
0.5
464
Normal
0.5
482
Normal
0.5
546
Normal
0.5
1016
Normal
0.5
858
Normal
0.5
864
Normal
0.5
416
Normal
0.5
868
Normal
0.5
778
Normal
0.5
136
Normal
0.5
938
Normal
0.5
196
Normal
0.5
756
Normal
0.5
286
Normal
0.5
186
Normal
0.4
356
Normal
0.4
968
Normal
0.4
627
Tumor
0.4
534
Normal
0.4
412
Normal
0.4
396
Normal
0.4
966
Normal
0.4
956
Normal
0.4
456
Normal
0.4
912
Normal
0.4
786
Normal
0.4
366
Normal
0.4
982
Normal
0.4
228
Normal
0.4
148
Normal
0.4
488
Normal
0.4
258
Normal
0.4
364
Normal
0.4
882
Normal
0.4
394
Normal
0.4
696
Normal
0.4
955
Tumor
0.4
944
Normal
0.4
376
Normal
0.4
114
Normal
0.3
278
Normal
0.3
874
Normal
0.3
722
Normal
0.3
616
Normal
0.3
452
Normal
0.3
818
Normal
0.3
716
Normal
0.3
386
Normal
0.3
218
Normal
0.3
922
Normal
0.3
327
Tumor
0.3
642
Normal
0.3
422
Normal
0.3
426
Normal
0.3
142
Normal
0.3
568
Normal
0.3
664
Normal
0.3
232
Normal
0.3
272
Normal
0.3
884
Normal
0.3
1028
Normal
0.3
414
Normal
0.3
964
Normal
0.3
432
Normal
0.3
358
Normal
0.3
214
Normal
0.3
636
Normal
0.3
138
Normal
0.3
428
Normal
0.3
926
Normal
0.3
554
Normal
0.3
328
Normal
0.3
918
Normal
0.3
424
Normal
0.2
628
Normal
0.2
1014
Normal
0.2
528
Normal
0.2
388
Normal
0.2
312
Normal
0.2
212
Normal
0.2
1046
Normal
0.2
516
Normal
0.2
392
Normal
0.2
314
Normal
0.2
1032
Normal
0.2
362
Normal
0.2
911
Tumor
0.2
515
Tumor
0.2
1041
Tumor
0.2
526
Normal
0.2
662
Normal
0.2
494
Normal
0.2
146
Normal
0.2
686
Normal
0.1
981
Tumor
0.1
572
Normal
0.1
465
Tumor
0.1
976
Normal
0.1
666
Normal
0.1
574
Normal
0.1
564
Normal
0.1
984
Normal
0.1
344
Normal
0.1
332
Normal
0.1
468
Normal
0.1
126
Normal
0.1
1044
Normal
0.1
513
Tumor
0.1
284
Normal
0.1
514
Normal
0.1
262
Normal
0.0
865
Tumor
0.0
558
Normal
0.0
354
Normal
0.0
867
Tumor
0.0
352
Normal
0.0
1043
Tumor
0.0
954
Normal
0.0
481
Tumor
0.0
461
Tumor
0.0
852
Normal
0.0
916
Normal
0.0
1042
Normal
0.0
958
Normal
0.0
538
Normal
-0.1
915
Tumor
-0.1
741
Tumor
-0.1
777
Tumor
-0.1
137
Tumor
-0.1
925
Tumor
-0.1
363
Tumor
-0.1
368
Normal
-0.1
978
Normal
-0.1
188
Normal
-0.1
563
Tumor
-0.1
261
Tumor
-0.2
124
Normal
-0.2
745
Tumor
-0.2
434
Normal
-0.2
221
Tumor
-0.2
553
Tumor
-0.2
1031
Tumor
-0.2
141
Tumor
-0.2
492
Normal
-0.2
365
Tumor
-0.2
268
Normal
-0.2
224
Normal
-0.2
145
Tumor
-0.2
477
Tumor
-0.2
615
Tumor
-0.3
415
Tumor
-0.3
478
Normal
-0.3
227
Tumor
-0.3
192
Normal
-0.3
873
Tumor
-0.3
857
Tumor
-0.3
641
Tumor
-0.3
471
Tumor
-0.3
785
Tumor
-0.3
755
Tumor
-0.3
883
Tumor
-0.4
353
Tumor
-0.4
384
Normal
-0.4
921
Tumor
-0.4
672
Normal
-0.4
421
Tumor
-0.4
423
Tumor
-0.4
217
Tumor
-0.4
498
Normal
-0.4
1027
Tumor
-0.4
861
Tumor
-0.4
431
Tumor
-0.4
446
Normal
-0.4
444
Normal
-0.5
195
Tumor
-0.5
271
Tumor
-0.5
881
Tumor
-0.5
341
Tumor
-0.5
913
Tumor
-0.5
727
Tumor
-0.5
524
Normal
-0.5
257
Tumor
-0.5
113
Tumor
-0.5
523
Tumor
-0.5
1021
Tumor
-0.5
1013
Tumor
-0.5
473
Tumor
-0.5
975
Tumor
-0.5
185
Tumor
-0.6
443
Tumor
-0.6
951
Tumor
-0.6
125
Tumor
-0.6
533
Tumor
-0.6
1025
Tumor
-0.6
525
Tumor
-0.6
663
Tumor
-0.6
267
Tumor
-0.6
617
Tumor
-0.6
127
Tumor
-0.6
483
Tumor
-0.6
537
Tumor
-0.6
713
Tumor
-0.6
147
Tumor
-0.6
721
Tumor
-0.6
823
Tumor
-0.6
361
Tumor
-0.6
131
Tumor
-0.6
957
Tumor
-0.6
425
Tumor
-0.6
536
Normal
-0.7
493
Tumor
-0.7
937
Tumor
-0.7
817
Tumor
-0.7
355
Tumor
-0.7
435
Tumor
-0.7
161
Tumor
-0.7
863
Tumor
-0.7
647
Tumor
-0.8
223
Tumor
-0.8
963
Tumor
-0.8
737
Tumor
-0.8
953
Tumor
-0.8
815
Tumor
-0.8
447
Tumor
-0.8
685
Tumor
-0.8
977
Tumor
-0.8
715
Tumor
-0.8
112
Tumor
-0.8
455
Tumor
-0.8
517
Tumor
-0.8
191
Tumor
-0.8
877
Tumor
-0.8
557
Tumor
-0.8
1045
Tumor
-0.8
451
Tumor
-0.9
487
Tumor
-0.9
135
Tumor
-0.9
491
Tumor
-0.9
411
Tumor
-0.9
1015
Tumor
-0.9
123
Tumor
-0.9
571
Tumor
-0.9
297
Tumor
-0.9
357
Tumor
-0.9
187
Tumor
-0.9
814
Normal
-1.0
433
Tumor
-1.0
387
Tumor
-1.0
393
Tumor
-1.0
923
Tumor
-1.0
943
Tumor
-1.0
917
Tumor
-1.0
375
Tumor
-1.0
313
Tumor
-1.1
665
Tumor
-1.1
467
Tumor
-1.1
231
Tumor
-1.1
851
Tumor
-1.1
635
Tumor
-1.1
545
Tumor
-1.1
413
Tumor
-1.1
743
Tumor
-1.1
813
Tumor
-1.1
463
Tumor
-1.2
213
Tumor
-1.2
277
Tumor
-1.2
497
Tumor
-1.2
171
Tumor
-1.2
395
Tumor
-1.2
967
Tumor
-1.2
383
Tumor
-1.3
527
Tumor
-1.3
331
Tumor
-1.3
567
Tumor
-1.3
385
Tumor
-1.3
445
Tumor
-1.3
211
Tumor
-1.4
427
Tumor
-1.4
311
Tumor
-1.4
343
Tumor
-1.4
285
Tumor
-1.4
724
Normal
-1.5
573
Tumor
-1.5
367
Tumor
-1.5
697
Tumor
-1.5
351
Tumor
-1.5
983
Tumor
-1.5
283
Tumor
-1.5
965
Tumor
-1.6
391
Tumor
-1.6
671
Tumor
-1.6
661
Tumor
-1.8
535
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
