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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMMDC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMMDC1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.4
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
72.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
66.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
63.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
49.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
43.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.3
537
Tumor
1.3
227
Tumor
1.2
627
Tumor
1.1
517
Tumor
1.1
513
Tumor
0.9
785
Tumor
0.9
365
Tumor
0.9
615
Tumor
0.9
745
Tumor
0.8
571
Tumor
0.8
231
Tumor
0.8
697
Tumor
0.8
777
Tumor
0.8
663
Tumor
0.8
967
Tumor
0.7
1043
Tumor
0.7
477
Tumor
0.7
1045
Tumor
0.7
411
Tumor
0.6
393
Tumor
0.6
965
Tumor
0.6
1031
Tumor
0.6
1013
Tumor
0.6
953
Tumor
0.6
535
Tumor
0.6
423
Tumor
0.6
1027
Tumor
0.6
1025
Tumor
0.5
461
Tumor
0.5
361
Tumor
0.5
257
Tumor
0.5
665
Tumor
0.5
883
Tumor
0.5
741
Tumor
0.5
641
Tumor
0.5
567
Tumor
0.5
1041
Tumor
0.5
743
Tumor
0.5
491
Tumor
0.5
353
Tumor
0.5
271
Tumor
0.5
1015
Tumor
0.5
363
Tumor
0.4
865
Tumor
0.4
515
Tumor
0.4
391
Tumor
0.4
465
Tumor
0.4
563
Tumor
0.4
443
Tumor
0.4
553
Tumor
0.4
127
Tumor
0.4
863
Tumor
0.4
421
Tumor
0.4
957
Tumor
0.4
913
Tumor
0.4
727
Tumor
0.3
145
Tumor
0.3
534
Normal
0.3
951
Tumor
0.3
435
Tumor
0.3
473
Tumor
0.3
481
Tumor
0.3
921
Tumor
0.3
937
Tumor
0.3
285
Tumor
0.3
471
Tumor
0.3
923
Tumor
0.3
191
Tumor
0.3
483
Tumor
0.3
171
Tumor
0.2
954
Normal
0.2
392
Normal
0.2
433
Tumor
0.2
861
Tumor
0.2
713
Tumor
0.2
395
Tumor
0.2
427
Tumor
0.2
867
Tumor
0.2
387
Tumor
0.2
472
Normal
0.2
922
Normal
0.2
258
Normal
0.2
112
Tumor
0.2
195
Tumor
0.2
924
Normal
0.2
884
Normal
0.2
267
Tumor
0.2
487
Tumor
0.2
147
Tumor
0.2
746
Normal
0.2
926
Normal
0.2
975
Tumor
0.2
232
Normal
0.2
436
Normal
0.2
367
Tumor
0.2
123
Tumor
0.2
474
Normal
0.2
161
Tumor
0.1
218
Normal
0.1
715
Tumor
0.1
686
Normal
0.1
452
Normal
0.1
823
Tumor
0.1
786
Normal
0.1
214
Normal
0.1
977
Tumor
0.1
546
Normal
0.1
217
Tumor
0.1
125
Tumor
0.1
862
Normal
0.1
388
Normal
0.1
572
Normal
0.1
533
Tumor
0.1
723
Tumor
0.1
671
Tumor
0.1
426
Normal
0.1
494
Normal
0.1
136
Normal
0.1
755
Tumor
0.1
222
Normal
0.1
1032
Normal
0.1
742
Normal
0.1
968
Normal
0.1
912
Normal
0.1
558
Normal
0.1
737
Tumor
0.1
857
Tumor
0.1
432
Normal
0.1
868
Normal
0.1
916
Normal
0.1
864
Normal
0.1
128
Normal
0.1
976
Normal
0.1
882
Normal
0.1
1042
Normal
0.1
344
Normal
0.1
568
Normal
0.1
446
Normal
0.1
873
Tumor
0.1
394
Normal
0.1
368
Normal
0.1
911
Tumor
0.1
564
Normal
0.1
963
Tumor
0.1
618
Normal
0.1
451
Tumor
0.1
524
Normal
0.1
958
Normal
0.1
444
Normal
0.1
186
Normal
0.1
874
Normal
0.1
113
Tumor
0.1
137
Tumor
0.1
574
Normal
0.1
464
Normal
0.1
492
Normal
0.1
944
Normal
0.1
313
Tumor
0.1
221
Tumor
0.1
918
Normal
0.0
314
Normal
0.0
536
Normal
0.0
278
Normal
0.0
616
Normal
0.0
664
Normal
0.0
383
Tumor
0.0
488
Normal
0.0
756
Normal
0.0
213
Tumor
0.0
724
Normal
0.0
196
Normal
0.0
328
Normal
0.0
468
Normal
0.0
354
Normal
0.0
212
Normal
0.0
223
Tumor
0.0
484
Normal
0.0
956
Normal
0.0
341
Tumor
0.0
277
Tumor
0.0
364
Normal
0.0
262
Normal
0.0
818
Normal
0.0
386
Normal
0.0
815
Tumor
0.0
1014
Normal
0.0
268
Normal
0.0
185
Tumor
0.0
852
Normal
0.0
142
Normal
0.0
738
Normal
0.0
978
Normal
0.0
463
Tumor
0.0
716
Normal
0.0
538
Normal
0.0
297
Tumor
0.0
648
Normal
0.0
672
Normal
0.0
416
Normal
0.0
824
Normal
0.0
148
Normal
0.0
964
Normal
0.0
1026
Normal
0.0
466
Normal
0.0
228
Normal
0.0
714
Normal
0.0
385
Tumor
0.0
636
Normal
0.0
141
Tumor
0.0
1016
Normal
0.0
384
Normal
0.0
283
Tumor
0.0
284
Normal
0.0
111
Normal
0.0
497
Tumor
0.0
866
Normal
0.0
332
Normal
0.0
984
Normal
0.0
366
Normal
0.0
915
Tumor
0.0
817
Tumor
0.0
172
Normal
0.0
858
Normal
0.0
396
Normal
0.0
272
Normal
0.0
955
Tumor
0.0
666
Normal
0.0
286
Normal
0.0
414
Normal
0.0
224
Normal
0.0
545
Tumor
-0.1
376
Normal
-0.1
188
Normal
-0.1
424
Normal
-0.1
162
Normal
-0.1
1021
Tumor
-0.1
132
Normal
-0.1
356
Normal
-0.1
434
Normal
-0.1
478
Normal
-0.1
1028
Normal
-0.1
114
Normal
-0.1
493
Tumor
-0.1
126
Normal
-0.1
131
Tumor
-0.1
352
Normal
-0.1
722
Normal
-0.1
415
Tumor
-0.1
146
Normal
-0.1
628
Normal
-0.1
462
Normal
-0.1
554
Normal
-0.1
1022
Normal
-0.1
528
Normal
-0.1
662
Normal
-0.1
431
Tumor
-0.1
375
Tumor
-0.1
943
Tumor
-0.1
448
Normal
-0.1
966
Normal
-0.1
938
Normal
-0.1
698
Normal
-0.1
695
Tumor
-0.1
982
Normal
-0.1
135
Tumor
-0.1
357
Tumor
-0.1
952
Normal
-0.1
124
Normal
-0.1
642
Normal
-0.1
778
Normal
-0.1
516
Normal
-0.1
192
Normal
-0.1
428
Normal
-0.1
187
Tumor
-0.1
138
Normal
-0.1
983
Tumor
-0.1
456
Normal
-0.1
514
Normal
-0.1
362
Normal
-0.1
914
Normal
-0.1
728
Normal
-0.1
573
Tumor
-0.1
1046
Normal
-0.1
342
Normal
-0.1
358
Normal
-0.1
455
Tumor
-0.2
412
Normal
-0.2
498
Normal
-0.2
425
Tumor
-0.2
696
Normal
-0.2
422
Normal
-0.2
526
Normal
-0.2
351
Tumor
-0.2
482
Normal
-0.2
518
Normal
-0.2
851
Tumor
-0.2
312
Normal
-0.2
661
Tumor
-0.2
813
Tumor
-0.2
525
Tumor
-0.2
298
Normal
-0.2
327
Tumor
-0.2
685
Tumor
-0.2
467
Tumor
-0.3
211
Tumor
-0.3
557
Tumor
-0.3
261
Tumor
-0.3
878
Normal
-0.3
331
Tumor
-0.3
1044
Normal
-0.3
816
Normal
-0.3
647
Tumor
-0.3
445
Tumor
-0.3
881
Tumor
-0.3
814
Normal
-0.4
635
Tumor
-0.4
447
Tumor
-0.4
343
Tumor
-0.4
877
Tumor
-0.4
917
Tumor
-0.4
744
Normal
-0.4
355
Tumor
-0.4
981
Tumor
-0.4
617
Tumor
-0.5
527
Tumor
-0.5
523
Tumor
-0.5
311
Tumor
-0.6
413
Tumor
-0.6
721
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
