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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHHADH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
303.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
249.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
204.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
201.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
199.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
194.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
191.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
180.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
176.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
175.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
172.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
170.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
167.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
166.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
165.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
162.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
161.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
158.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
157.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
156.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
155.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
153.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
152.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
152.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
150.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
149.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
147.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
144.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
140.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
140.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
139.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
135.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
135.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
135.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
135.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
135.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
134.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
133.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
133.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
126.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
126.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
125.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
123.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
121.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
121.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
117.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
116.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
115.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
113.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
112.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
112.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
110.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
110.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
110.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
108.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
107.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
106.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
105.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
104.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
103.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
103.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
102.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
101.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
99.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
99.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
98.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
98.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
96.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
94.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
94.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
94.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
92.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
91.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
91.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
91.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
90.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
90.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
88.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
86.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
86.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
85.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
85.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
84.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
84.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
83.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
81.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
80.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
80.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
80.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
80.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
79.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
77.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
77.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
77.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
77.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
76.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
75.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
74.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
73.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
73.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
72.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
72.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
71.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
71.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
69.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
69.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
67.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
67.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
67.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
66.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
65.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
61.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
60.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
59.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
59.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
57.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
56.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
55.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
54.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
54.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
53.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
53.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
52.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
47.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
44.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
43.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
41.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
35.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
26.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHHADH is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.4
Number of samples
231
Samples
Sample
Description
TPM
DO45111
0 years, male, NA, stage:2, alive, 1590 days
216.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
209.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
203.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
183.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
171.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
166.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
163.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
162.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
160.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
158.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
158.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
158.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
154.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
152.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
149.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
147.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
147.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
145.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
139.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
138.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
136.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
134.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
129.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
125.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
124.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
123.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
119.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
117.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
117.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
117.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
115.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
115.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
114.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
114.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
113.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
112.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
112.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
112.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
111.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
111.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
110.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
109.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
108.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
108.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
107.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
106.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
104.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
102.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
101.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
99.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
99.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
98.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
97.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
96.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
95.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
95.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
94.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
94.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
94.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
93.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
92.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
92.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
92.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
91.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
89.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
88.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
88.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
88.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
83.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
82.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
82.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
81.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
81.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
81.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
80.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
79.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
78.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
78.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
77.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
77.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
76.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
75.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
74.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
73.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
72.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
70.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
68.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
67.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
67.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
66.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
64.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
64.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
61.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
61.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
60.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
59.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
58.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
50.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
49.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
45.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
44.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.8
1041
Tumor
1.6
477
Tumor
1.1
112
Tumor
0.9
261
Tumor
0.9
231
Tumor
0.8
627
Tumor
0.8
436
Normal
0.7
938
Normal
0.7
356
Normal
0.6
224
Normal
0.6
388
Normal
0.6
868
Normal
0.6
136
Normal
0.6
314
Normal
0.6
232
Normal
0.6
462
Normal
0.6
423
Tumor
0.6
922
Normal
0.6
915
Tumor
0.6
137
Tumor
0.6
128
Normal
0.6
222
Normal
0.6
954
Normal
0.6
742
Normal
0.6
913
Tumor
0.6
648
Normal
0.6
412
Normal
0.6
466
Normal
0.6
428
Normal
0.6
272
Normal
0.6
695
Tumor
0.5
862
Normal
0.5
618
Normal
0.5
258
Normal
0.5
494
Normal
0.5
878
Normal
0.5
172
Normal
0.5
186
Normal
0.5
452
Normal
0.5
111
Normal
0.5
464
Normal
0.5
424
Normal
0.5
196
Normal
0.5
513
Tumor
0.5
981
Tumor
0.5
228
Normal
0.5
867
Tumor
0.5
422
Normal
0.5
148
Normal
0.5
861
Tumor
0.5
262
Normal
0.5
1016
Normal
0.5
866
Normal
0.5
1046
Normal
0.5
448
Normal
0.5
534
Normal
0.5
615
Tumor
0.4
1042
Normal
0.4
268
Normal
0.4
563
Tumor
0.4
384
Normal
0.4
738
Normal
0.4
557
Tumor
0.4
364
Normal
0.4
564
Normal
0.4
616
Normal
0.4
636
Normal
0.4
884
Normal
0.4
978
Normal
0.4
162
Normal
0.4
446
Normal
0.4
414
Normal
0.4
328
Normal
0.4
874
Normal
0.4
278
Normal
0.4
914
Normal
0.4
816
Normal
0.4
214
Normal
0.4
132
Normal
0.4
396
Normal
0.4
482
Normal
0.4
341
Tumor
0.4
432
Normal
0.4
354
Normal
0.4
426
Normal
0.4
474
Normal
0.4
312
Normal
0.4
628
Normal
0.4
664
Normal
0.3
944
Normal
0.3
964
Normal
0.3
824
Normal
0.3
376
Normal
0.3
746
Normal
0.3
362
Normal
0.3
714
Normal
0.3
666
Normal
0.3
982
Normal
0.3
572
Normal
0.3
366
Normal
0.3
728
Normal
0.3
478
Normal
0.3
353
Tumor
0.3
416
Normal
0.3
882
Normal
0.3
218
Normal
0.3
365
Tumor
0.3
727
Tumor
0.3
342
Normal
0.3
514
Normal
0.3
642
Normal
0.3
515
Tumor
0.3
852
Normal
0.3
1022
Normal
0.3
528
Normal
0.3
1032
Normal
0.3
662
Normal
0.3
568
Normal
0.3
114
Normal
0.3
918
Normal
0.3
538
Normal
0.3
481
Tumor
0.3
465
Tumor
0.3
284
Normal
0.3
698
Normal
0.2
916
Normal
0.2
298
Normal
0.2
1045
Tumor
0.2
472
Normal
0.2
171
Tumor
0.2
286
Normal
0.2
858
Normal
0.2
912
Normal
0.2
332
Normal
0.2
777
Tumor
0.2
722
Normal
0.2
1014
Normal
0.2
484
Normal
0.2
138
Normal
0.2
857
Tumor
0.2
818
Normal
0.2
955
Tumor
0.2
188
Normal
0.2
546
Normal
0.2
358
Normal
0.2
518
Normal
0.2
1028
Normal
0.2
574
Normal
0.2
864
Normal
0.2
1044
Normal
0.2
212
Normal
0.2
926
Normal
0.2
456
Normal
0.2
958
Normal
0.2
394
Normal
0.2
976
Normal
0.2
126
Normal
0.1
526
Normal
0.1
956
Normal
0.1
1026
Normal
0.1
267
Tumor
0.1
363
Tumor
0.1
427
Tumor
0.1
786
Normal
0.1
142
Normal
0.1
1027
Tumor
0.1
127
Tumor
0.1
124
Normal
0.1
755
Tumor
0.1
723
Tumor
0.1
952
Normal
0.1
227
Tumor
0.1
558
Normal
0.1
924
Normal
0.1
392
Normal
0.1
368
Normal
0.0
686
Normal
0.0
984
Normal
0.0
468
Normal
0.0
435
Tumor
0.0
516
Normal
0.0
968
Normal
0.0
146
Normal
0.0
977
Tumor
0.0
444
Normal
0.0
716
Normal
0.0
696
Normal
0.0
756
Normal
0.0
352
Normal
0.0
744
Normal
0.0
966
Normal
0.0
641
Tumor
0.0
257
Tumor
0.0
863
Tumor
-0.1
145
Tumor
-0.1
415
Tumor
-0.1
192
Normal
-0.1
386
Normal
-0.1
123
Tumor
-0.1
554
Normal
-0.1
185
Tumor
-0.1
433
Tumor
-0.1
195
Tumor
-0.1
778
Normal
-0.1
617
Tumor
-0.1
434
Normal
-0.1
161
Tumor
-0.1
471
Tumor
-0.2
488
Normal
-0.2
461
Tumor
-0.2
873
Tumor
-0.2
141
Tumor
-0.2
191
Tumor
-0.2
533
Tumor
-0.2
443
Tumor
-0.2
344
Normal
-0.2
113
Tumor
-0.2
451
Tumor
-0.2
361
Tumor
-0.3
672
Normal
-0.3
187
Tumor
-0.3
327
Tumor
-0.3
411
Tumor
-0.3
721
Tumor
-0.3
421
Tumor
-0.3
493
Tumor
-0.3
498
Normal
-0.4
921
Tumor
-0.4
663
Tumor
-0.4
715
Tumor
-0.4
217
Tumor
-0.4
271
Tumor
-0.4
524
Normal
-0.4
685
Tumor
-0.4
713
Tumor
-0.5
1031
Tumor
-0.5
883
Tumor
-0.5
492
Normal
-0.5
937
Tumor
-0.5
741
Tumor
-0.5
785
Tumor
-0.6
445
Tumor
-0.6
517
Tumor
-0.6
1025
Tumor
-0.6
823
Tumor
-0.7
745
Tumor
-0.7
487
Tumor
-0.7
963
Tumor
-0.7
213
Tumor
-0.7
553
Tumor
-0.7
431
Tumor
-0.7
357
Tumor
-0.7
925
Tumor
-0.7
814
Normal
-0.7
571
Tumor
-0.8
393
Tumor
-0.8
817
Tumor
-0.8
877
Tumor
-0.8
447
Tumor
-0.8
647
Tumor
-0.8
1043
Tumor
-0.8
355
Tumor
-0.8
223
Tumor
-0.9
147
Tumor
-0.9
967
Tumor
-0.9
881
Tumor
-0.9
943
Tumor
-0.9
483
Tumor
-0.9
536
Normal
-0.9
297
Tumor
-0.9
851
Tumor
-0.9
567
Tumor
-0.9
221
Tumor
-1.0
313
Tumor
-1.0
1015
Tumor
-1.0
135
Tumor
-1.0
525
Tumor
-1.0
527
Tumor
-1.0
865
Tumor
-1.0
473
Tumor
-1.0
383
Tumor
-1.1
665
Tumor
-1.1
923
Tumor
-1.1
1013
Tumor
-1.1
1021
Tumor
-1.1
635
Tumor
-1.3
463
Tumor
-1.3
375
Tumor
-1.3
391
Tumor
-1.3
813
Tumor
-1.3
917
Tumor
-1.3
395
Tumor
-1.3
975
Tumor
-1.3
737
Tumor
-1.4
965
Tumor
-1.4
455
Tumor
-1.4
491
Tumor
-1.4
957
Tumor
-1.5
387
Tumor
-1.5
983
Tumor
-1.5
497
Tumor
-1.5
537
Tumor
-1.5
953
Tumor
-1.6
277
Tumor
-1.6
331
Tumor
-1.6
425
Tumor
-1.6
125
Tumor
-1.6
367
Tumor
-1.6
951
Tumor
-1.6
697
Tumor
-1.6
413
Tumor
-1.7
467
Tumor
-1.7
343
Tumor
-1.7
523
Tumor
-1.7
815
Tumor
-1.8
311
Tumor
-1.8
285
Tumor
-1.8
545
Tumor
-1.9
671
Tumor
-1.9
573
Tumor
-2.0
351
Tumor
-2.0
131
Tumor
-2.1
283
Tumor
-2.1
211
Tumor
-2.2
724
Normal
-2.3
535
Tumor
-2.3
743
Tumor
-2.4
385
Tumor
-2.5
661
Tumor
-2.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
