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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
83.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
70.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
68.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
65.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
49.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.8
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
104.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
96.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
61.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
54.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
54.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
48.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
45.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
45.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
0.9
267
Tumor
0.6
1041
Tumor
0.6
427
Tumor
0.5
777
Tumor
0.5
145
Tumor
0.5
863
Tumor
0.5
913
Tumor
0.4
123
Tumor
0.4
191
Tumor
0.4
663
Tumor
0.4
873
Tumor
0.4
533
Tumor
0.4
353
Tumor
0.4
147
Tumor
0.4
523
Tumor
0.3
1045
Tumor
0.3
977
Tumor
0.3
187
Tumor
0.3
445
Tumor
0.3
285
Tumor
0.3
473
Tumor
0.3
665
Tumor
0.3
131
Tumor
0.3
557
Tumor
0.3
515
Tumor
0.3
135
Tumor
0.2
277
Tumor
0.2
865
Tumor
0.2
314
Normal
0.2
257
Tumor
0.2
365
Tumor
0.2
443
Tumor
0.2
955
Tumor
0.2
231
Tumor
0.2
647
Tumor
0.2
268
Normal
0.2
685
Tumor
0.2
261
Tumor
0.2
564
Normal
0.2
425
Tumor
0.2
395
Tumor
0.2
327
Tumor
0.2
737
Tumor
0.2
148
Normal
0.2
517
Tumor
0.2
715
Tumor
0.2
416
Normal
0.2
877
Tumor
0.2
815
Tumor
0.2
867
Tumor
0.2
975
Tumor
0.2
574
Normal
0.2
278
Normal
0.2
951
Tumor
0.2
271
Tumor
0.1
341
Tumor
0.1
641
Tumor
0.1
432
Normal
0.1
671
Tumor
0.1
513
Tumor
0.1
785
Tumor
0.1
824
Normal
0.1
332
Normal
0.1
864
Normal
0.1
355
Tumor
0.1
817
Tumor
0.1
433
Tumor
0.1
141
Tumor
0.1
162
Normal
0.1
312
Normal
0.1
461
Tumor
0.1
472
Normal
0.1
917
Tumor
0.1
1021
Tumor
0.1
572
Normal
0.1
487
Tumor
0.1
221
Tumor
0.1
262
Normal
0.1
258
Normal
0.1
471
Tumor
0.1
786
Normal
0.1
743
Tumor
0.1
414
Normal
0.1
171
Tumor
0.1
413
Tumor
0.1
428
Normal
0.1
357
Tumor
0.1
222
Normal
0.1
311
Tumor
0.1
666
Normal
0.1
451
Tumor
0.1
298
Normal
0.1
446
Normal
0.1
497
Tumor
0.1
411
Tumor
0.1
423
Tumor
0.1
723
Tumor
0.1
568
Normal
0.1
953
Tumor
0.1
186
Normal
0.1
331
Tumor
0.1
137
Tumor
0.1
444
Normal
0.1
351
Tumor
0.1
1027
Tumor
0.1
313
Tumor
0.1
1028
Normal
0.1
618
Normal
0.1
392
Normal
0.1
982
Normal
0.1
172
Normal
0.1
415
Tumor
0.1
462
Normal
0.1
464
Normal
0.1
648
Normal
0.1
455
Tumor
0.1
424
Normal
0.1
874
Normal
0.1
664
Normal
0.1
125
Tumor
0.1
528
Normal
0.1
354
Normal
0.1
884
Normal
0.1
436
Normal
0.1
466
Normal
0.1
978
Normal
0.1
818
Normal
0.1
431
Tumor
0.1
558
Normal
0.1
375
Tumor
0.1
111
Normal
0.1
912
Normal
0.1
112
Tumor
0.1
857
Tumor
0.1
448
Normal
0.1
742
Normal
0.1
527
Tumor
0.1
493
Tumor
0.1
463
Tumor
0.1
213
Tumor
0.1
161
Tumor
0.1
966
Normal
0.0
745
Tumor
0.0
617
Tumor
0.0
297
Tumor
0.0
185
Tumor
0.0
136
Normal
0.0
882
Normal
0.0
965
Tumor
0.0
914
Normal
0.0
615
Tumor
0.0
218
Normal
0.0
286
Normal
0.0
814
Normal
0.0
195
Tumor
0.0
851
Tumor
0.0
861
Tumor
0.0
138
Normal
0.0
881
Tumor
0.0
778
Normal
0.0
477
Tumor
0.0
852
Normal
0.0
866
Normal
0.0
482
Normal
0.0
1031
Tumor
0.0
196
Normal
0.0
738
Normal
0.0
878
Normal
0.0
426
Normal
0.0
964
Normal
0.0
474
Normal
0.0
481
Tumor
0.0
192
Normal
0.0
393
Tumor
0.0
328
Normal
0.0
272
Normal
0.0
383
Tumor
0.0
755
Tumor
0.0
467
Tumor
0.0
915
Tumor
0.0
358
Normal
0.0
1042
Normal
0.0
491
Tumor
0.0
984
Normal
0.0
386
Normal
0.0
385
Tumor
0.0
384
Normal
0.0
746
Normal
0.0
695
Tumor
0.0
925
Tumor
0.0
127
Tumor
0.0
214
Normal
0.0
921
Tumor
0.0
1016
Normal
0.0
478
Normal
0.0
412
Normal
0.0
188
Normal
0.0
211
Tumor
0.0
394
Normal
0.0
434
Normal
0.0
868
Normal
0.0
391
Tumor
0.0
113
Tumor
0.0
698
Normal
0.0
284
Normal
0.0
976
Normal
0.0
361
Tumor
0.0
883
Tumor
0.0
212
Normal
0.0
954
Normal
0.0
447
Tumor
0.0
132
Normal
0.0
435
Tumor
0.0
545
Tumor
0.0
352
Normal
0.0
465
Tumor
0.0
662
Normal
0.0
1025
Tumor
0.0
981
Tumor
0.0
756
Normal
0.0
1026
Normal
0.0
367
Tumor
0.0
422
Normal
0.0
661
Tumor
0.0
627
Tumor
0.0
816
Normal
0.0
862
Normal
0.0
1046
Normal
0.0
498
Normal
0.0
364
Normal
0.0
525
Tumor
0.0
923
Tumor
0.0
813
Tumor
0.0
744
Normal
0.0
126
Normal
0.0
616
Normal
0.0
362
Normal
0.0
686
Normal
0.0
388
Normal
0.0
938
Normal
0.0
114
Normal
0.0
926
Normal
0.0
1014
Normal
0.0
1043
Tumor
0.0
741
Tumor
0.0
858
Normal
0.0
396
Normal
0.0
943
Tumor
0.0
456
Normal
0.0
223
Tumor
0.0
232
Normal
0.0
546
Normal
0.0
217
Tumor
0.0
728
Normal
0.0
518
Normal
0.0
368
Normal
0.0
713
Tumor
0.0
356
Normal
-0.1
526
Normal
-0.1
535
Tumor
-0.1
916
Normal
-0.1
1032
Normal
-0.1
983
Tumor
-0.1
956
Normal
-0.1
722
Normal
-0.1
672
Normal
-0.1
957
Tumor
-0.1
538
Normal
-0.1
573
Tumor
-0.1
567
Tumor
-0.1
421
Tumor
-0.1
724
Normal
-0.1
696
Normal
-0.1
224
Normal
-0.1
958
Normal
-0.1
727
Tumor
-0.1
387
Tumor
-0.1
554
Normal
-0.1
952
Normal
-0.1
452
Normal
-0.1
628
Normal
-0.1
714
Normal
-0.1
468
Normal
-0.1
146
Normal
-0.1
534
Normal
-0.1
563
Tumor
-0.1
344
Normal
-0.1
924
Normal
-0.1
944
Normal
-0.1
343
Tumor
-0.1
553
Tumor
-0.1
716
Normal
-0.1
514
Normal
-0.1
228
Normal
-0.1
1044
Normal
-0.1
342
Normal
-0.1
124
Normal
-0.1
922
Normal
-0.1
968
Normal
-0.1
524
Normal
-0.1
963
Tumor
-0.1
142
Normal
-0.1
376
Normal
-0.1
918
Normal
-0.1
484
Normal
-0.1
635
Tumor
-0.1
571
Tumor
-0.1
636
Normal
-0.1
128
Normal
-0.1
1022
Normal
-0.1
721
Tumor
-0.1
937
Tumor
-0.1
516
Normal
-0.1
823
Tumor
-0.1
697
Tumor
-0.1
283
Tumor
-0.2
537
Tumor
-0.2
642
Normal
-0.2
494
Normal
-0.2
227
Tumor
-0.2
488
Normal
-0.2
967
Tumor
-0.2
483
Tumor
-0.2
492
Normal
-0.2
366
Normal
-0.2
363
Tumor
-0.2
1013
Tumor
-0.3
1015
Tumor
-0.3
536
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
