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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNDC15 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
75.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
60.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
51.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TXNDC15 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
137
Tumor
1.3
145
Tumor
1.2
146
Normal
1.2
141
Tumor
1.0
138
Normal
1.0
132
Normal
0.8
1043
Tumor
0.8
722
Normal
0.7
696
Normal
0.7
261
Tumor
0.7
135
Tumor
0.7
636
Normal
0.7
642
Normal
0.6
616
Normal
0.6
353
Tumor
0.6
142
Normal
0.6
393
Tumor
0.6
424
Normal
0.6
865
Tumor
0.6
431
Tumor
0.5
877
Tumor
0.5
277
Tumor
0.5
195
Tumor
0.5
647
Tumor
0.5
131
Tumor
0.5
546
Normal
0.5
448
Normal
0.5
628
Normal
0.5
231
Tumor
0.4
488
Normal
0.4
816
Normal
0.4
352
Normal
0.4
414
Normal
0.4
915
Tumor
0.4
387
Tumor
0.4
391
Tumor
0.4
618
Normal
0.4
388
Normal
0.4
557
Tumor
0.4
641
Tumor
0.4
426
Normal
0.4
411
Tumor
0.4
473
Tumor
0.4
471
Tumor
0.4
267
Tumor
0.4
187
Tumor
0.4
481
Tumor
0.4
627
Tumor
0.4
497
Tumor
0.4
232
Normal
0.3
852
Normal
0.3
412
Normal
0.3
858
Normal
0.3
354
Normal
0.3
714
Normal
0.3
615
Tumor
0.3
356
Normal
0.3
922
Normal
0.3
191
Tumor
0.3
392
Normal
0.3
553
Tumor
0.3
863
Tumor
0.3
428
Normal
0.3
912
Normal
0.3
697
Tumor
0.3
824
Normal
0.3
258
Normal
0.3
484
Normal
0.3
672
Normal
0.3
223
Tumor
0.3
364
Normal
0.3
648
Normal
0.3
1032
Normal
0.3
396
Normal
0.3
285
Tumor
0.3
343
Tumor
0.3
327
Tumor
0.3
368
Normal
0.3
363
Tumor
0.3
818
Normal
0.3
384
Normal
0.3
422
Normal
0.3
432
Normal
0.3
523
Tumor
0.3
358
Normal
0.3
494
Normal
0.3
916
Normal
0.3
517
Tumor
0.3
171
Tumor
0.2
1042
Normal
0.2
365
Tumor
0.2
328
Normal
0.2
923
Tumor
0.2
926
Normal
0.2
394
Normal
0.2
528
Normal
0.2
455
Tumor
0.2
878
Normal
0.2
416
Normal
0.2
728
Normal
0.2
785
Tumor
0.2
918
Normal
0.2
745
Tumor
0.2
851
Tumor
0.2
461
Tumor
0.2
713
Tumor
0.2
527
Tumor
0.2
222
Normal
0.2
376
Normal
0.2
857
Tumor
0.2
662
Normal
0.2
465
Tumor
0.2
1046
Normal
0.2
221
Tumor
0.2
664
Normal
0.2
617
Tumor
0.2
227
Tumor
0.2
862
Normal
0.2
355
Tumor
0.2
813
Tumor
0.2
914
Normal
0.2
823
Tumor
0.2
723
Tumor
0.2
128
Normal
0.2
446
Normal
0.2
297
Tumor
0.2
344
Normal
0.2
498
Normal
0.2
955
Tumor
0.2
436
Normal
0.2
427
Tumor
0.2
513
Tumor
0.2
331
Tumor
0.2
741
Tumor
0.2
452
Normal
0.2
574
Normal
0.2
534
Normal
0.2
147
Tumor
0.1
468
Normal
0.1
944
Normal
0.1
487
Tumor
0.1
1025
Tumor
0.1
451
Tumor
0.1
284
Normal
0.1
1045
Tumor
0.1
526
Normal
0.1
161
Tumor
0.1
727
Tumor
0.1
423
Tumor
0.1
262
Normal
0.1
571
Tumor
0.1
361
Tumor
0.1
533
Tumor
0.1
383
Tumor
0.1
777
Tumor
0.1
1022
Normal
0.1
563
Tumor
0.1
357
Tumor
0.1
272
Normal
0.1
1041
Tumor
0.1
921
Tumor
0.1
286
Normal
0.1
421
Tumor
0.1
1026
Normal
0.1
313
Tumor
0.1
1027
Tumor
0.1
815
Tumor
0.1
464
Normal
0.1
467
Tumor
0.1
635
Tumor
0.1
698
Normal
0.1
514
Normal
0.1
492
Normal
0.1
564
Normal
0.1
386
Normal
0.1
435
Tumor
0.1
866
Normal
0.1
554
Normal
0.1
362
Normal
0.1
756
Normal
0.1
342
Normal
0.1
1016
Normal
0.1
724
Normal
0.1
861
Tumor
0.1
937
Tumor
0.1
868
Normal
0.1
917
Tumor
0.1
976
Normal
0.1
525
Tumor
0.1
375
Tumor
0.1
466
Normal
0.1
415
Tumor
0.0
814
Normal
0.0
536
Normal
0.0
952
Normal
0.0
228
Normal
0.0
213
Tumor
0.0
911
Tumor
0.0
474
Normal
0.0
477
Tumor
0.0
186
Normal
0.0
666
Normal
0.0
212
Normal
0.0
686
Normal
0.0
1014
Normal
0.0
665
Tumor
0.0
445
Tumor
0.0
516
Normal
0.0
217
Tumor
0.0
351
Tumor
0.0
483
Tumor
0.0
162
Normal
0.0
332
Normal
0.0
515
Tumor
0.0
924
Normal
0.0
1044
Normal
0.0
172
Normal
0.0
938
Normal
0.0
568
Normal
0.0
395
Tumor
0.0
148
Normal
0.0
913
Tumor
0.0
366
Normal
0.0
956
Normal
0.0
572
Normal
0.0
567
Tumor
0.0
977
Tumor
0.0
954
Normal
0.0
491
Tumor
0.0
964
Normal
0.0
953
Tumor
0.0
268
Normal
0.0
737
Tumor
0.0
984
Normal
0.0
882
Normal
0.0
312
Normal
0.0
778
Normal
0.0
124
Normal
0.0
311
Tumor
0.0
968
Normal
0.0
127
Tumor
0.0
978
Normal
0.0
755
Tumor
0.0
867
Tumor
0.0
463
Tumor
0.0
192
Normal
0.0
444
Normal
0.0
874
Normal
-0.1
456
Normal
-0.1
1028
Normal
-0.1
884
Normal
-0.1
425
Tumor
-0.1
271
Tumor
-0.1
314
Normal
-0.1
524
Normal
-0.1
738
Normal
-0.1
278
Normal
-0.1
433
Tumor
-0.1
1013
Tumor
-0.1
925
Tumor
-0.1
786
Normal
-0.1
385
Tumor
-0.1
715
Tumor
-0.1
196
Normal
-0.1
742
Normal
-0.1
434
Normal
-0.1
257
Tumor
-0.1
744
Normal
-0.1
1031
Tumor
-0.1
983
Tumor
-0.1
746
Normal
-0.1
443
Tumor
-0.1
111
Normal
-0.1
518
Normal
-0.1
114
Normal
-0.1
218
Normal
-0.1
224
Normal
-0.1
558
Normal
-0.1
873
Tumor
-0.1
982
Normal
-0.1
298
Normal
-0.1
864
Normal
-0.1
743
Tumor
-0.1
136
Normal
-0.1
716
Normal
-0.1
965
Tumor
-0.1
545
Tumor
-0.1
211
Tumor
-0.1
967
Tumor
-0.1
447
Tumor
-0.2
663
Tumor
-0.2
538
Normal
-0.2
493
Tumor
-0.2
951
Tumor
-0.2
462
Normal
-0.2
943
Tumor
-0.2
126
Normal
-0.2
1021
Tumor
-0.2
966
Normal
-0.2
958
Normal
-0.2
671
Tumor
-0.2
573
Tumor
-0.2
883
Tumor
-0.2
188
Normal
-0.2
482
Normal
-0.2
881
Tumor
-0.3
341
Tumor
-0.3
214
Normal
-0.3
367
Tumor
-0.3
413
Tumor
-0.3
695
Tumor
-0.3
981
Tumor
-0.3
963
Tumor
-0.3
817
Tumor
-0.3
185
Tumor
-0.3
975
Tumor
-0.3
661
Tumor
-0.3
1015
Tumor
-0.3
113
Tumor
-0.4
283
Tumor
-0.4
537
Tumor
-0.4
535
Tumor
-0.4
685
Tumor
-0.4
721
Tumor
-0.4
472
Normal
-0.4
123
Tumor
-0.5
957
Tumor
-0.5
112
Tumor
-0.6
125
Tumor
-0.9
478
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
