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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAD50 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAD50 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.3
865
Tumor
1.0
487
Tumor
0.8
513
Tumor
0.8
427
Tumor
0.8
535
Tumor
0.8
491
Tumor
0.8
1013
Tumor
0.8
951
Tumor
0.7
131
Tumor
0.7
715
Tumor
0.7
967
Tumor
0.7
483
Tumor
0.7
285
Tumor
0.6
665
Tumor
0.6
227
Tumor
0.6
925
Tumor
0.6
211
Tumor
0.6
815
Tumor
0.6
881
Tumor
0.6
517
Tumor
0.5
957
Tumor
0.5
1031
Tumor
0.5
921
Tumor
0.5
391
Tumor
0.5
497
Tumor
0.5
355
Tumor
0.5
965
Tumor
0.5
685
Tumor
0.5
375
Tumor
0.5
877
Tumor
0.5
533
Tumor
0.5
471
Tumor
0.5
647
Tumor
0.4
917
Tumor
0.4
777
Tumor
0.4
817
Tumor
0.4
363
Tumor
0.4
863
Tumor
0.4
387
Tumor
0.4
161
Tumor
0.4
425
Tumor
0.4
465
Tumor
0.4
537
Tumor
0.4
913
Tumor
0.3
713
Tumor
0.3
724
Normal
0.3
493
Tumor
0.3
331
Tumor
0.3
963
Tumor
0.3
313
Tumor
0.3
351
Tumor
0.3
443
Tumor
0.3
147
Tumor
0.3
492
Normal
0.3
523
Tumor
0.3
563
Tumor
0.3
385
Tumor
0.3
1021
Tumor
0.3
851
Tumor
0.3
113
Tumor
0.3
277
Tumor
0.3
545
Tumor
0.3
695
Tumor
0.2
341
Tumor
0.2
257
Tumor
0.2
421
Tumor
0.2
661
Tumor
0.2
367
Tumor
0.2
697
Tumor
0.2
737
Tumor
0.2
185
Tumor
0.2
478
Normal
0.2
527
Tumor
0.2
461
Tumor
0.2
553
Tumor
0.2
415
Tumor
0.2
213
Tumor
0.2
635
Tumor
0.2
451
Tumor
0.2
271
Tumor
0.2
536
Normal
0.2
455
Tumor
0.2
311
Tumor
0.2
861
Tumor
0.2
923
Tumor
0.2
191
Tumor
0.2
983
Tumor
0.2
1041
Tumor
0.2
221
Tumor
0.2
395
Tumor
0.1
125
Tumor
0.1
915
Tumor
0.1
538
Normal
0.1
524
Normal
0.1
127
Tumor
0.1
916
Normal
0.1
911
Tumor
0.1
1015
Tumor
0.1
721
Tumor
0.1
671
Tumor
0.1
741
Tumor
0.1
977
Tumor
0.1
937
Tumor
0.1
686
Normal
0.1
217
Tumor
0.1
641
Tumor
0.1
498
Normal
0.1
663
Tumor
0.1
823
Tumor
0.1
981
Tumor
0.1
1027
Tumor
0.1
516
Normal
0.1
954
Normal
0.1
137
Tumor
0.1
463
Tumor
0.1
212
Normal
0.1
943
Tumor
0.1
573
Tumor
0.1
953
Tumor
0.1
525
Tumor
0.1
984
Normal
0.0
195
Tumor
0.0
444
Normal
0.0
883
Tumor
0.0
743
Tumor
0.0
1043
Tumor
0.0
431
Tumor
0.0
383
Tumor
0.0
557
Tumor
0.0
727
Tumor
0.0
467
Tumor
0.0
785
Tumor
0.0
447
Tumor
0.0
141
Tumor
0.0
327
Tumor
0.0
867
Tumor
0.0
145
Tumor
0.0
958
Normal
0.0
978
Normal
0.0
515
Tumor
0.0
224
Normal
0.0
617
Tumor
0.0
171
Tumor
0.0
924
Normal
0.0
477
Tumor
0.0
192
Normal
0.0
716
Normal
0.0
423
Tumor
0.0
514
Normal
0.0
494
Normal
0.0
343
Tumor
-0.1
284
Normal
-0.1
357
Tumor
-0.1
433
Tumor
-0.1
968
Normal
-0.1
297
Tumor
-0.1
975
Tumor
-0.1
922
Normal
-0.1
567
Tumor
-0.1
528
Normal
-0.1
187
Tumor
-0.1
966
Normal
-0.1
1014
Normal
-0.1
413
Tumor
-0.1
964
Normal
-0.1
944
Normal
-0.1
755
Tumor
-0.1
955
Tumor
-0.1
714
Normal
-0.1
283
Tumor
-0.1
488
Normal
-0.1
435
Tumor
-0.1
484
Normal
-0.1
142
Normal
-0.1
146
Normal
-0.1
1028
Normal
-0.1
938
Normal
-0.1
918
Normal
-0.1
778
Normal
-0.1
411
Tumor
-0.1
884
Normal
-0.1
756
Normal
-0.1
353
Tumor
-0.1
448
Normal
-0.1
696
Normal
-0.1
474
Normal
-0.1
858
Normal
-0.1
1025
Tumor
-0.1
874
Normal
-0.1
534
Normal
-0.1
472
Normal
-0.1
852
Normal
-0.2
952
Normal
-0.2
866
Normal
-0.2
188
Normal
-0.2
786
Normal
-0.2
814
Normal
-0.2
481
Tumor
-0.2
434
Normal
-0.2
412
Normal
-0.2
1016
Normal
-0.2
518
Normal
-0.2
126
Normal
-0.2
868
Normal
-0.2
926
Normal
-0.2
728
Normal
-0.2
462
Normal
-0.2
982
Normal
-0.2
344
Normal
-0.2
361
Tumor
-0.2
857
Tumor
-0.2
824
Normal
-0.2
1032
Normal
-0.2
526
Normal
-0.2
364
Normal
-0.2
722
Normal
-0.2
328
Normal
-0.2
546
Normal
-0.2
956
Normal
-0.2
312
Normal
-0.2
356
Normal
-0.2
352
Normal
-0.2
882
Normal
-0.2
416
Normal
-0.2
554
Normal
-0.2
482
Normal
-0.2
286
Normal
-0.2
365
Tumor
-0.2
912
Normal
-0.2
818
Normal
-0.2
1045
Tumor
-0.2
745
Tumor
-0.2
428
Normal
-0.2
172
Normal
-0.2
816
Normal
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
162
Normal
-0.3
878
Normal
-0.3
662
Normal
-0.3
873
Tumor
-0.3
228
Normal
-0.3
138
Normal
-0.3
864
Normal
-0.3
384
Normal
-0.3
628
Normal
-0.3
558
Normal
-0.3
672
Normal
-0.3
738
Normal
-0.3
666
Normal
-0.3
1022
Normal
-0.3
148
Normal
-0.3
746
Normal
-0.3
466
Normal
-0.3
268
Normal
-0.3
414
Normal
-0.3
136
Normal
-0.3
723
Tumor
-0.3
123
Tumor
-0.3
574
Normal
-0.3
214
Normal
-0.3
744
Normal
-0.3
424
Normal
-0.3
1046
Normal
-0.3
362
Normal
-0.3
223
Tumor
-0.3
262
Normal
-0.3
422
Normal
-0.3
664
Normal
-0.3
564
Normal
-0.3
261
Tumor
-0.3
386
Normal
-0.3
1026
Normal
-0.3
813
Tumor
-0.3
446
Normal
-0.3
636
Normal
-0.3
128
Normal
-0.3
231
Tumor
-0.3
616
Normal
-0.3
314
Normal
-0.3
112
Tumor
-0.3
393
Tumor
-0.3
392
Normal
-0.3
572
Normal
-0.3
914
Normal
-0.3
272
Normal
-0.3
571
Tumor
-0.3
698
Normal
-0.4
332
Normal
-0.4
627
Tumor
-0.4
132
Normal
-0.4
124
Normal
-0.4
186
Normal
-0.4
464
Normal
-0.4
862
Normal
-0.4
196
Normal
-0.4
114
Normal
-0.4
218
Normal
-0.4
368
Normal
-0.4
354
Normal
-0.4
426
Normal
-0.4
267
Tumor
-0.4
111
Normal
-0.4
436
Normal
-0.4
742
Normal
-0.4
298
Normal
-0.4
388
Normal
-0.4
432
Normal
-0.4
366
Normal
-0.4
648
Normal
-0.4
278
Normal
-0.4
468
Normal
-0.4
445
Tumor
-0.5
376
Normal
-0.5
232
Normal
-0.5
394
Normal
-0.5
258
Normal
-0.5
568
Normal
-0.5
456
Normal
-0.5
618
Normal
-0.5
358
Normal
-0.5
135
Tumor
-0.5
976
Normal
-0.5
342
Normal
-0.5
642
Normal
-0.5
615
Tumor
-0.5
222
Normal
-0.5
396
Normal
-0.5
452
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
