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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
137.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1427.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
835.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
753.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
436.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
427.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
399.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
363.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
360.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
347.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
345.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
329.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
320.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
309.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
299.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
297.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
292.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
289.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
289.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
287.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
286.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
285.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
279.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
277.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
272.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
272.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
264.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
264.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
263.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
263.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
261.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
260.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
260.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
256.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
253.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
247.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
244.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
243.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
243.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
239.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
235.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
232.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
232.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
231.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
230.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
222.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
220.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
220.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
219.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
213.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
210.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
207.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
207.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
204.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
203.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
202.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
199.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
198.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
196.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
195.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
195.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
195.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
195.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
193.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
190.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
190.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
185.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
185.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
184.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
183.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
181.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
177.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
177.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
174.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
173.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
172.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
172.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
171.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
169.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
169.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
168.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
168.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
167.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
165.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
165.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
164.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
163.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
162.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
160.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
159.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
157.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
157.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
156.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
155.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
155.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
154.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
151.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
149.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
148.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
148.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
148.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
147.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
147.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
146.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
146.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
144.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
144.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
143.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
143.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
142.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
142.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
142.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
141.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
140.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
140.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
139.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
139.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
139.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
138.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
138.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
138.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
138.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
137.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
136.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
136.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
135.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
135.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
135.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
134.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
134.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
134.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
133.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
133.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
133.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
133.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
132.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
130.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
130.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
130.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
129.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
129.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
128.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
128.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
127.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
127.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
127.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
127.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
126.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
126.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
125.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
124.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
124.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
123.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
122.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
121.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
121.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
121.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
120.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
119.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
119.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
118.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
118.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
118.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
118.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
117.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
117.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
117.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
115.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
115.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
115.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
115.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
115.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
113.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
113.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
112.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
111.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
111.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
110.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
110.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
109.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
109.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
109.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
108.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
108.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
108.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
108.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
108.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
107.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
107.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
107.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
106.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
106.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
106.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
106.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
105.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
105.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
105.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
105.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
103.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
103.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
103.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
102.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
101.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
101.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
101.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
101.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
101.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
101.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
101.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
101.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
100.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
100.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
100.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
100.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
99.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
99.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
98.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
98.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
98.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
97.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
97.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
97.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
96.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
96.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
96.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
96.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
95.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
95.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
94.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
94.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
94.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
93.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
93.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
93.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
93.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
92.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
92.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
90.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
90.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
90.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
90.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
90.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
89.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
89.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
88.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
88.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
88.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
88.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
87.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
87.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
87.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
86.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
85.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
85.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
85.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
85.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
84.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
84.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
83.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
83.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
83.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
83.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
82.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
82.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
81.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
81.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
81.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
80.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
79.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
79.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
78.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
78.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
78.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
78.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
77.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
77.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
77.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
77.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
76.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
76.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
75.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
75.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
74.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
74.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
73.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
73.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
73.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
72.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
72.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
72.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
71.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
71.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
71.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
70.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
70.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
70.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
70.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
69.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
69.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
69.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
68.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
68.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
67.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
67.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
66.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
66.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
65.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
65.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
65.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
65.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
64.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
64.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
64.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
64.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
64.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
61.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
61.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
60.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
60.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
60.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
59.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
58.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
58.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
57.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
56.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
54.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
53.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
46.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
44.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
39.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
38.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.1
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
265.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
217.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
194.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
169.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
152.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
130.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
121.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
117.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
117.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
116.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
107.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
102.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
102.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
100.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
98.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
98.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
97.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
97.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
94.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
93.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
92.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
85.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
82.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
82.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
79.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
78.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
78.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
75.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
73.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
72.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
71.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
69.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
67.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
67.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
66.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
66.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
65.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
64.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
64.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
62.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
62.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
61.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
60.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
60.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
59.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
59.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
58.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
57.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
57.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
56.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
53.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
53.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
53.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
48.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
48.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
47.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
47.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
44.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
483
Tumor
2.2
523
Tumor
1.5
1021
Tumor
1.3
211
Tumor
1.3
545
Tumor
1.2
395
Tumor
1.1
527
Tumor
1.1
865
Tumor
1.1
195
Tumor
1.1
685
Tumor
1.1
647
Tumor
1.0
671
Tumor
1.0
1015
Tumor
1.0
943
Tumor
0.9
497
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
461
Tumor
0.8
413
Tumor
0.8
141
Tumor
0.8
375
Tumor
0.8
473
Tumor
0.8
665
Tumor
0.7
724
Normal
0.7
455
Tumor
0.7
467
Tumor
0.7
951
Tumor
0.7
493
Tumor
0.6
425
Tumor
0.6
721
Tumor
0.6
471
Tumor
0.6
863
Tumor
0.6
965
Tumor
0.6
131
Tumor
0.6
813
Tumor
0.6
421
Tumor
0.5
1027
Tumor
0.5
814
Normal
0.5
913
Tumor
0.5
777
Tumor
0.5
411
Tumor
0.5
433
Tumor
0.5
963
Tumor
0.4
563
Tumor
0.4
881
Tumor
0.4
515
Tumor
0.4
661
Tumor
0.4
917
Tumor
0.4
977
Tumor
0.4
127
Tumor
0.4
975
Tumor
0.3
423
Tumor
0.3
923
Tumor
0.3
427
Tumor
0.3
213
Tumor
0.3
231
Tumor
0.3
191
Tumor
0.3
477
Tumor
0.3
635
Tumor
0.3
883
Tumor
0.3
355
Tumor
0.3
755
Tumor
0.3
627
Tumor
0.2
983
Tumor
0.2
1013
Tumor
0.2
363
Tumor
0.2
873
Tumor
0.2
937
Tumor
0.2
217
Tumor
0.2
435
Tumor
0.2
385
Tumor
0.2
185
Tumor
0.2
663
Tumor
0.2
221
Tumor
0.2
911
Tumor
0.2
463
Tumor
0.2
697
Tumor
0.2
925
Tumor
0.2
535
Tumor
0.2
957
Tumor
0.2
487
Tumor
0.1
431
Tumor
0.1
161
Tumor
0.1
415
Tumor
0.1
443
Tumor
0.1
953
Tumor
0.1
137
Tumor
0.1
737
Tumor
0.1
353
Tumor
0.1
331
Tumor
0.1
447
Tumor
0.1
187
Tumor
0.1
745
Tumor
0.1
524
Normal
0.1
261
Tumor
0.1
741
Tumor
0.1
478
Normal
0.1
297
Tumor
0.0
517
Tumor
0.0
357
Tumor
0.0
1031
Tumor
0.0
351
Tumor
0.0
815
Tumor
0.0
257
Tumor
0.0
445
Tumor
0.0
212
Normal
0.0
967
Tumor
0.0
573
Tumor
0.0
966
Normal
0.0
557
Tumor
0.0
867
Tumor
0.0
715
Tumor
-0.1
984
Normal
-0.1
713
Tumor
-0.1
147
Tumor
-0.1
367
Tumor
-0.1
537
Tumor
-0.1
516
Normal
-0.1
492
Normal
-0.1
1041
Tumor
-0.1
227
Tumor
-0.1
536
Normal
-0.1
857
Tumor
-0.1
513
Tumor
-0.1
383
Tumor
-0.1
978
Normal
-0.1
916
Normal
-0.1
145
Tumor
-0.1
533
Tumor
-0.1
861
Tumor
-0.1
695
Tumor
-0.1
135
Tumor
-0.1
852
Normal
-0.1
1042
Normal
-0.1
981
Tumor
-0.1
1025
Tumor
-0.1
491
Tumor
-0.2
817
Tumor
-0.2
277
Tumor
-0.2
434
Normal
-0.2
113
Tumor
-0.2
615
Tumor
-0.2
686
Normal
-0.2
311
Tumor
-0.2
955
Tumor
-0.2
716
Normal
-0.2
123
Tumor
-0.2
498
Normal
-0.2
756
Normal
-0.2
267
Tumor
-0.2
125
Tumor
-0.2
553
Tumor
-0.2
958
Normal
-0.2
284
Normal
-0.2
714
Normal
-0.2
538
Normal
-0.2
192
Normal
-0.2
514
Normal
-0.3
1014
Normal
-0.3
964
Normal
-0.3
786
Normal
-0.3
1016
Normal
-0.3
361
Tumor
-0.3
617
Tumor
-0.3
223
Tumor
-0.3
954
Normal
-0.3
343
Tumor
-0.3
534
Normal
-0.3
785
Tumor
-0.3
968
Normal
-0.3
224
Normal
-0.3
488
Normal
-0.3
918
Normal
-0.3
444
Normal
-0.3
778
Normal
-0.3
877
Tumor
-0.3
472
Normal
-0.3
313
Tumor
-0.3
528
Normal
-0.3
641
Tumor
-0.3
494
Normal
-0.3
327
Tumor
-0.4
952
Normal
-0.4
412
Normal
-0.4
1032
Normal
-0.4
823
Tumor
-0.4
462
Normal
-0.4
1044
Normal
-0.4
484
Normal
-0.4
976
Normal
-0.4
696
Normal
-0.4
546
Normal
-0.4
982
Normal
-0.4
391
Tumor
-0.4
1022
Normal
-0.4
1028
Normal
-0.4
481
Tumor
-0.4
188
Normal
-0.4
474
Normal
-0.4
851
Tumor
-0.4
364
Normal
-0.4
558
Normal
-0.4
268
Normal
-0.4
938
Normal
-0.4
878
Normal
-0.4
356
Normal
-0.4
884
Normal
-0.4
915
Tumor
-0.4
866
Normal
-0.4
482
Normal
-0.4
416
Normal
-0.4
926
Normal
-0.4
628
Normal
-0.5
956
Normal
-0.5
864
Normal
-0.5
944
Normal
-0.5
451
Tumor
-0.5
393
Tumor
-0.5
518
Normal
-0.5
286
Normal
-0.5
384
Normal
-0.5
882
Normal
-0.5
921
Tumor
-0.5
362
Normal
-0.5
525
Tumor
-0.5
341
Tumor
-0.5
328
Normal
-0.5
922
Normal
-0.5
414
Normal
-0.5
728
Normal
-0.5
924
Normal
-0.5
126
Normal
-0.5
746
Normal
-0.5
824
Normal
-0.5
738
Normal
-0.5
723
Tumor
-0.5
171
Tumor
-0.5
386
Normal
-0.5
432
Normal
-0.5
912
Normal
-0.5
858
Normal
-0.5
365
Tumor
-0.5
448
Normal
-0.5
1026
Normal
-0.5
465
Tumor
-0.5
662
Normal
-0.5
874
Normal
-0.6
1046
Normal
-0.6
146
Normal
-0.6
466
Normal
-0.6
228
Normal
-0.6
446
Normal
-0.6
172
Normal
-0.6
368
Normal
-0.6
526
Normal
-0.6
424
Normal
-0.6
862
Normal
-0.6
818
Normal
-0.6
142
Normal
-0.6
1043
Tumor
-0.6
283
Tumor
-0.6
742
Normal
-0.6
112
Tumor
-0.6
722
Normal
-0.6
554
Normal
-0.6
422
Normal
-0.6
618
Normal
-0.6
271
Tumor
-0.6
138
Normal
-0.6
664
Normal
-0.6
816
Normal
-0.6
572
Normal
-0.6
436
Normal
-0.6
376
Normal
-0.6
698
Normal
-0.6
136
Normal
-0.6
727
Tumor
-0.6
464
Normal
-0.6
196
Normal
-0.6
567
Tumor
-0.6
394
Normal
-0.6
616
Normal
-0.6
352
Normal
-0.7
272
Normal
-0.7
456
Normal
-0.7
232
Normal
-0.7
396
Normal
-0.7
428
Normal
-0.7
366
Normal
-0.7
868
Normal
-0.7
218
Normal
-0.7
387
Tumor
-0.7
344
Normal
-0.7
262
Normal
-0.7
666
Normal
-0.7
468
Normal
-0.7
388
Normal
-0.7
1045
Tumor
-0.7
574
Normal
-0.7
222
Normal
-0.7
636
Normal
-0.7
214
Normal
-0.7
914
Normal
-0.7
186
Normal
-0.7
148
Normal
-0.7
426
Normal
-0.8
744
Normal
-0.8
162
Normal
-0.8
114
Normal
-0.8
564
Normal
-0.8
672
Normal
-0.8
111
Normal
-0.8
392
Normal
-0.8
258
Normal
-0.8
568
Normal
-0.8
648
Normal
-0.8
332
Normal
-0.9
278
Normal
-0.9
132
Normal
-0.9
642
Normal
-0.9
314
Normal
-0.9
312
Normal
-0.9
298
Normal
-0.9
124
Normal
-0.9
452
Normal
-0.9
128
Normal
-0.9
354
Normal
-0.9
342
Normal
-1.0
358
Normal
-1.0
571
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.