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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCO6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCO6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.6
Number of samples
231
Samples
Sample
Description
TPM
DO23533
0 years, male, NA, stage:2, alive, 900 days
110.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
87.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
86.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
71.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
68.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
63.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
58.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
41.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.5
965
Tumor
1.2
695
Tumor
1.1
523
Tumor
1.0
642
Normal
1.0
517
Tumor
0.9
636
Normal
0.9
473
Tumor
0.9
877
Tumor
0.9
277
Tumor
0.8
618
Normal
0.8
615
Tumor
0.7
357
Tumor
0.7
131
Tumor
0.7
477
Tumor
0.6
1021
Tumor
0.6
937
Tumor
0.6
487
Tumor
0.6
967
Tumor
0.5
391
Tumor
0.5
743
Tumor
0.5
465
Tumor
0.5
923
Tumor
0.5
616
Normal
0.5
463
Tumor
0.5
925
Tumor
0.5
953
Tumor
0.5
635
Tumor
0.5
867
Tumor
0.5
367
Tumor
0.5
1031
Tumor
0.4
647
Tumor
0.4
535
Tumor
0.4
715
Tumor
0.4
1013
Tumor
0.4
628
Normal
0.4
413
Tumor
0.4
951
Tumor
0.4
815
Tumor
0.4
1025
Tumor
0.4
513
Tumor
0.4
868
Normal
0.4
411
Tumor
0.4
665
Tumor
0.3
756
Normal
0.3
423
Tumor
0.3
862
Normal
0.3
977
Tumor
0.3
425
Tumor
0.3
461
Tumor
0.3
823
Tumor
0.3
1041
Tumor
0.3
493
Tumor
0.3
957
Tumor
0.3
533
Tumor
0.3
537
Tumor
0.3
924
Normal
0.3
355
Tumor
0.3
494
Normal
0.3
641
Tumor
0.3
331
Tumor
0.3
112
Tumor
0.3
866
Normal
0.2
431
Tumor
0.2
483
Tumor
0.2
857
Tumor
0.2
744
Normal
0.2
161
Tumor
0.2
786
Normal
0.2
341
Tumor
0.2
123
Tumor
0.2
915
Tumor
0.2
213
Tumor
0.2
873
Tumor
0.2
672
Normal
0.2
571
Tumor
0.2
878
Normal
0.2
393
Tumor
0.2
741
Tumor
0.2
497
Tumor
0.2
471
Tumor
0.2
755
Tumor
0.2
221
Tumor
0.2
113
Tumor
0.2
1027
Tumor
0.2
342
Normal
0.2
921
Tumor
0.2
922
Normal
0.2
217
Tumor
0.2
963
Tumor
0.2
516
Normal
0.2
938
Normal
0.2
817
Tumor
0.2
271
Tumor
0.2
944
Normal
0.2
958
Normal
0.2
387
Tumor
0.1
814
Normal
0.1
187
Tumor
0.1
918
Normal
0.1
785
Tumor
0.1
778
Normal
0.1
661
Tumor
0.1
926
Normal
0.1
127
Tumor
0.1
671
Tumor
0.1
981
Tumor
0.1
858
Normal
0.1
545
Tumor
0.1
864
Normal
0.1
195
Tumor
0.1
983
Tumor
0.1
883
Tumor
0.1
515
Tumor
0.1
394
Normal
0.1
388
Normal
0.1
488
Normal
0.1
484
Normal
0.1
1022
Normal
0.1
313
Tumor
0.1
258
Normal
0.1
966
Normal
0.1
285
Tumor
0.1
874
Normal
0.1
685
Tumor
0.1
914
Normal
0.1
956
Normal
0.1
232
Normal
0.1
186
Normal
0.1
524
Normal
0.1
567
Tumor
0.0
498
Normal
0.0
975
Tumor
0.0
1043
Tumor
0.0
396
Normal
0.0
746
Normal
0.0
534
Normal
0.0
538
Normal
0.0
297
Tumor
0.0
954
Normal
0.0
1032
Normal
0.0
617
Tumor
0.0
272
Normal
0.0
492
Normal
0.0
1026
Normal
0.0
553
Tumor
0.0
861
Tumor
0.0
573
Tumor
0.0
525
Tumor
0.0
663
Tumor
0.0
964
Normal
0.0
185
Tumor
0.0
135
Tumor
0.0
386
Normal
0.0
851
Tumor
0.0
723
Tumor
0.0
1042
Normal
0.0
742
Normal
0.0
865
Tumor
-0.1
727
Tumor
-0.1
737
Tumor
-0.1
666
Normal
-0.1
664
Normal
-0.1
162
Normal
-0.1
698
Normal
-0.1
955
Tumor
-0.1
982
Normal
-0.1
662
Normal
-0.1
738
Normal
-0.1
984
Normal
-0.1
392
Normal
-0.1
568
Normal
-0.1
952
Normal
-0.1
395
Tumor
-0.1
443
Tumor
-0.1
1028
Normal
-0.1
172
Normal
-0.1
648
Normal
-0.1
344
Normal
-0.1
148
Normal
-0.1
467
Tumor
-0.1
147
Tumor
-0.1
375
Tumor
-0.1
447
Tumor
-0.1
728
Normal
-0.1
852
Normal
-0.1
426
Normal
-0.1
363
Tumor
-0.1
435
Tumor
-0.1
514
Normal
-0.1
343
Tumor
-0.2
227
Tumor
-0.2
916
Normal
-0.2
422
Normal
-0.2
976
Normal
-0.2
455
Tumor
-0.2
813
Tumor
-0.2
228
Normal
-0.2
124
Normal
-0.2
1014
Normal
-0.2
1045
Tumor
-0.2
518
Normal
-0.2
448
Normal
-0.2
125
Tumor
-0.2
911
Tumor
-0.2
536
Normal
-0.2
816
Normal
-0.2
917
Tumor
-0.2
881
Tumor
-0.2
863
Tumor
-0.2
218
Normal
-0.2
1044
Normal
-0.2
912
Normal
-0.2
171
Tumor
-0.2
267
Tumor
-0.2
353
Tumor
-0.2
311
Tumor
-0.2
421
Tumor
-0.2
141
Tumor
-0.2
724
Normal
-0.2
385
Tumor
-0.2
557
Tumor
-0.2
558
Normal
-0.2
191
Tumor
-0.2
452
Normal
-0.2
351
Tumor
-0.2
528
Normal
-0.2
262
Normal
-0.2
943
Tumor
-0.2
968
Normal
-0.2
196
Normal
-0.2
114
Normal
-0.3
145
Tumor
-0.3
468
Normal
-0.3
268
Normal
-0.3
824
Normal
-0.3
546
Normal
-0.3
128
Normal
-0.3
745
Tumor
-0.3
491
Tumor
-0.3
574
Normal
-0.3
1046
Normal
-0.3
261
Tumor
-0.3
572
Normal
-0.3
354
Normal
-0.3
142
Normal
-0.3
462
Normal
-0.3
818
Normal
-0.3
222
Normal
-0.3
466
Normal
-0.3
456
Normal
-0.3
286
Normal
-0.3
436
Normal
-0.3
365
Tumor
-0.3
298
Normal
-0.3
257
Tumor
-0.3
882
Normal
-0.3
224
Normal
-0.3
564
Normal
-0.3
327
Tumor
-0.3
464
Normal
-0.3
697
Tumor
-0.3
433
Tumor
-0.3
332
Normal
-0.3
527
Tumor
-0.3
137
Tumor
-0.3
432
Normal
-0.3
383
Tumor
-0.3
126
Normal
-0.3
314
Normal
-0.3
696
Normal
-0.4
192
Normal
-0.4
563
Tumor
-0.4
526
Normal
-0.4
913
Tumor
-0.4
472
Normal
-0.4
427
Tumor
-0.4
554
Normal
-0.4
434
Normal
-0.4
777
Tumor
-0.4
368
Normal
-0.4
358
Normal
-0.4
111
Normal
-0.4
283
Tumor
-0.4
231
Tumor
-0.4
445
Tumor
-0.4
278
Normal
-0.4
978
Normal
-0.4
482
Normal
-0.4
481
Tumor
-0.4
214
Normal
-0.4
451
Tumor
-0.4
884
Normal
-0.4
364
Normal
-0.5
1016
Normal
-0.5
356
Normal
-0.5
722
Normal
-0.5
444
Normal
-0.5
352
Normal
-0.5
188
Normal
-0.5
1015
Tumor
-0.5
212
Normal
-0.5
428
Normal
-0.5
478
Normal
-0.5
312
Normal
-0.5
284
Normal
-0.5
424
Normal
-0.5
415
Tumor
-0.5
376
Normal
-0.5
686
Normal
-0.5
223
Tumor
-0.5
446
Normal
-0.5
366
Normal
-0.5
721
Tumor
-0.6
414
Normal
-0.6
328
Normal
-0.6
412
Normal
-0.6
136
Normal
-0.6
416
Normal
-0.6
138
Normal
-0.7
146
Normal
-0.7
713
Tumor
-0.7
361
Tumor
-0.7
211
Tumor
-0.7
474
Normal
-0.7
714
Normal
-0.7
132
Normal
-0.7
384
Normal
-0.7
716
Normal
-0.8
362
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
