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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
335.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
237.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
222.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
211.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
192.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
172.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
170.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
166.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
159.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
156.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
156.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
154.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
153.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
149.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
148.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
147.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
144.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
142.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
138.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
135.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
133.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
132.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
130.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
129.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
129.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
125.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
125.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
123.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
123.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
120.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
116.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
116.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
116.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
115.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
115.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
111.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
111.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
110.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
110.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
109.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
108.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
107.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
107.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
107.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
107.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
107.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
106.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
106.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
102.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
101.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
101.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
101.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
100.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
100.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
99.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
97.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
96.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
96.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
94.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
93.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
91.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
90.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
90.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
88.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
87.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
86.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
86.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
86.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
86.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
85.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
85.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
84.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
84.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
84.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
83.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
82.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
82.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
82.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
82.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
81.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
80.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
80.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
80.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
79.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
78.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
78.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
78.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
77.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
77.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
77.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
77.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
77.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
77.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
76.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
76.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
76.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
75.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
74.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
74.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
74.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
73.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
73.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
73.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
73.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
72.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
70.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
70.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
69.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
68.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
68.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
68.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
67.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
67.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
67.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
66.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
65.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
65.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
64.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
63.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
63.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
62.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
62.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
61.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
60.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
59.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
58.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
58.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
58.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
58.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
57.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
57.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
56.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
56.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
53.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
53.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
53.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
52.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
52.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
49.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
48.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
48.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
46.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
46.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
44.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
145.3
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
444.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
327.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
316.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
308.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
305.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
304.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
296.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
293.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
292.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
285.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
275.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
265.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
262.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
253.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
253.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
251.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
250.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
247.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
246.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
244.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
244.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
232.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
228.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
226.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
222.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
221.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
220.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
219.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
217.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
215.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
215.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
212.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
209.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
208.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
206.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
205.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
202.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
201.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
200.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
196.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
195.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
194.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
193.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
192.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
191.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
191.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
189.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
187.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
187.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
186.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
186.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
186.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
186.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
186.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
184.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
182.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
180.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
179.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
177.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
176.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
174.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
174.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
173.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
171.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
170.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
169.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
168.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
168.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
168.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
168.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
166.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
164.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
164.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
162.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
162.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
161.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
161.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
160.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
159.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
157.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
156.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
155.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
155.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
155.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
154.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
153.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
153.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
152.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
152.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
151.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
151.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
151.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
151.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
151.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
151.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
150.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
148.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
148.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
148.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
147.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
147.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
147.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
147.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
146.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
145.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
145.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
144.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
144.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
144.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
144.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
143.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
140.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
140.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
140.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
139.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
139.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
138.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
138.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
135.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
135.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
132.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
131.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
128.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
126.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
126.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
126.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
125.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
125.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
125.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
125.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
124.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
123.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
123.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
119.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
119.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
118.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
118.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
116.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
115.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
115.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
114.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
113.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
113.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
113.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
112.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
111.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
110.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
110.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
110.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
109.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
109.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
109.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
109.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
108.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
108.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
107.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
106.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
106.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
105.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
105.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
105.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
104.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
103.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
103.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
101.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
101.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
100.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
100.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
99.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
98.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
98.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
98.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
98.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
97.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
96.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
96.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
96.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
95.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
95.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
94.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
93.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
93.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
93.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
93.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
91.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
91.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
90.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
90.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
89.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
89.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
89.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
88.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
88.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
88.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
86.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
85.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
84.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
81.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
81.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
80.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
80.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
78.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
77.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
76.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
75.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
75.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
75.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
75.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
74.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
73.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
72.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
71.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
71.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
70.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
70.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
70.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
70.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
69.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
66.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
66.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
65.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
59.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
52.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
49.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.2
925
Tumor
1.1
745
Tumor
1.1
1013
Tumor
1.0
1027
Tumor
0.9
513
Tumor
0.9
353
Tumor
0.9
627
Tumor
0.9
491
Tumor
0.9
223
Tumor
0.8
537
Tumor
0.8
823
Tumor
0.8
557
Tumor
0.8
227
Tumor
0.8
865
Tumor
0.7
937
Tumor
0.7
713
Tumor
0.7
755
Tumor
0.7
145
Tumor
0.7
123
Tumor
0.7
487
Tumor
0.6
1041
Tumor
0.6
553
Tumor
0.6
1043
Tumor
0.6
851
Tumor
0.6
411
Tumor
0.6
477
Tumor
0.5
957
Tumor
0.5
883
Tumor
0.5
231
Tumor
0.5
523
Tumor
0.5
257
Tumor
0.5
355
Tumor
0.5
435
Tumor
0.4
567
Tumor
0.4
923
Tumor
0.4
967
Tumor
0.4
473
Tumor
0.4
267
Tumor
0.4
483
Tumor
0.4
135
Tumor
0.4
861
Tumor
0.4
191
Tumor
0.4
915
Tumor
0.4
535
Tumor
0.3
615
Tumor
0.3
873
Tumor
0.3
697
Tumor
0.3
361
Tumor
0.3
1025
Tumor
0.3
313
Tumor
0.3
911
Tumor
0.3
953
Tumor
0.3
443
Tumor
0.3
261
Tumor
0.3
527
Tumor
0.3
517
Tumor
0.2
161
Tumor
0.2
328
Normal
0.2
777
Tumor
0.2
951
Tumor
0.2
563
Tumor
0.2
221
Tumor
0.2
641
Tumor
0.2
867
Tumor
0.2
525
Tumor
0.2
465
Tumor
0.2
665
Tumor
0.2
363
Tumor
0.2
635
Tumor
0.2
431
Tumor
0.1
421
Tumor
0.1
533
Tumor
0.1
423
Tumor
0.1
488
Normal
0.1
922
Normal
0.1
484
Normal
0.1
534
Normal
0.1
554
Normal
0.1
695
Tumor
0.1
1021
Tumor
0.1
727
Tumor
0.1
913
Tumor
0.1
944
Normal
0.1
515
Tumor
0.1
912
Normal
0.1
868
Normal
0.1
617
Tumor
0.1
387
Tumor
0.1
383
Tumor
0.1
327
Tumor
0.1
786
Normal
0.1
213
Tumor
0.1
482
Normal
0.1
147
Tumor
0.1
452
Normal
0.1
824
Normal
0.1
756
Normal
0.1
356
Normal
0.1
448
Normal
0.1
467
Tumor
0.1
714
Normal
0.1
573
Tumor
0.1
514
Normal
0.1
497
Tumor
0.0
698
Normal
0.0
728
Normal
0.0
964
Normal
0.0
938
Normal
0.0
636
Normal
0.0
746
Normal
0.0
742
Normal
0.0
546
Normal
0.0
1045
Tumor
0.0
568
Normal
0.0
858
Normal
0.0
618
Normal
0.0
685
Tumor
0.0
481
Tumor
0.0
1014
Normal
0.0
738
Normal
0.0
474
Normal
0.0
365
Tumor
0.0
564
Normal
0.0
924
Normal
0.0
518
Normal
0.0
187
Tumor
0.0
648
Normal
0.0
818
Normal
0.0
722
Normal
0.0
723
Tumor
0.0
112
Tumor
0.0
696
Normal
0.0
341
Tumor
0.0
528
Normal
0.0
616
Normal
0.0
926
Normal
0.0
526
Normal
0.0
968
Normal
0.0
642
Normal
0.0
462
Normal
0.0
864
Normal
0.0
963
Tumor
0.0
982
Normal
0.0
572
Normal
0.0
981
Tumor
0.0
286
Normal
0.0
1026
Normal
0.0
391
Tumor
0.0
955
Tumor
0.0
196
Normal
0.0
128
Normal
0.0
412
Normal
0.0
472
Normal
0.0
663
Tumor
0.0
172
Normal
0.0
866
Normal
0.0
1032
Normal
0.0
664
Normal
0.0
148
Normal
0.0
647
Tumor
0.0
314
Normal
0.0
427
Tumor
0.0
984
Normal
0.0
977
Tumor
-0.1
218
Normal
-0.1
884
Normal
-0.1
228
Normal
-0.1
954
Normal
-0.1
471
Tumor
-0.1
857
Tumor
-0.1
1028
Normal
-0.1
978
Normal
-0.1
1046
Normal
-0.1
222
Normal
-0.1
686
Normal
-0.1
976
Normal
-0.1
1022
Normal
-0.1
232
Normal
-0.1
212
Normal
-0.1
1044
Normal
-0.1
332
Normal
-0.1
428
Normal
-0.1
918
Normal
-0.1
778
Normal
-0.1
965
Tumor
-0.1
127
Tumor
-0.1
558
Normal
-0.1
395
Tumor
-0.1
424
Normal
-0.1
195
Tumor
-0.1
882
Normal
-0.1
364
Normal
-0.1
186
Normal
-0.1
466
Normal
-0.1
258
Normal
-0.1
436
Normal
-0.1
494
Normal
-0.1
524
Normal
-0.1
375
Tumor
-0.1
113
Tumor
-0.1
958
Normal
-0.1
162
Normal
-0.1
813
Tumor
-0.1
344
Normal
-0.1
414
Normal
-0.1
217
Tumor
-0.1
721
Tumor
-0.1
862
Normal
-0.1
538
Normal
-0.1
785
Tumor
-0.1
628
Normal
-0.1
1016
Normal
-0.1
416
Normal
-0.1
952
Normal
-0.1
358
Normal
-0.1
278
Normal
-0.1
816
Normal
-0.1
342
Normal
-0.1
394
Normal
-0.1
114
Normal
-0.1
388
Normal
-0.1
393
Tumor
-0.1
741
Tumor
-0.1
214
Normal
-0.1
956
Normal
-0.1
874
Normal
-0.1
396
Normal
-0.1
1042
Normal
-0.2
916
Normal
-0.2
298
Normal
-0.2
277
Tumor
-0.2
376
Normal
-0.2
432
Normal
-0.2
137
Tumor
-0.2
464
Normal
-0.2
142
Normal
-0.2
446
Normal
-0.2
352
Normal
-0.2
426
Normal
-0.2
224
Normal
-0.2
422
Normal
-0.2
132
Normal
-0.2
716
Normal
-0.2
666
Normal
-0.2
284
Normal
-0.2
715
Tumor
-0.2
878
Normal
-0.2
285
Tumor
-0.2
914
Normal
-0.2
185
Tumor
-0.2
368
Normal
-0.2
451
Tumor
-0.2
136
Normal
-0.2
966
Normal
-0.2
124
Normal
-0.2
478
Normal
-0.2
744
Normal
-0.2
262
Normal
-0.2
415
Tumor
-0.2
141
Tumor
-0.2
367
Tumor
-0.2
392
Normal
-0.2
1031
Tumor
-0.2
983
Tumor
-0.2
492
Normal
-0.2
354
Normal
-0.2
272
Normal
-0.2
516
Normal
-0.2
852
Normal
-0.2
461
Tumor
-0.2
456
Normal
-0.2
413
Tumor
-0.3
662
Normal
-0.3
468
Normal
-0.3
385
Tumor
-0.3
574
Normal
-0.3
366
Normal
-0.3
138
Normal
-0.3
312
Normal
-0.3
493
Tumor
-0.3
362
Normal
-0.3
743
Tumor
-0.3
863
Tumor
-0.3
171
Tumor
-0.3
297
Tumor
-0.3
724
Normal
-0.3
672
Normal
-0.3
111
Normal
-0.3
357
Tumor
-0.3
384
Normal
-0.3
126
Normal
-0.3
877
Tumor
-0.3
921
Tumor
-0.3
386
Normal
-0.3
433
Tumor
-0.3
536
Normal
-0.3
498
Normal
-0.4
268
Normal
-0.4
188
Normal
-0.4
434
Normal
-0.4
1015
Tumor
-0.4
737
Tumor
-0.4
351
Tumor
-0.4
444
Normal
-0.4
881
Tumor
-0.4
331
Tumor
-0.4
455
Tumor
-0.4
146
Normal
-0.4
425
Tumor
-0.5
975
Tumor
-0.5
814
Normal
-0.5
447
Tumor
-0.5
815
Tumor
-0.5
192
Normal
-0.6
817
Tumor
-0.6
671
Tumor
-0.6
125
Tumor
-0.6
463
Tumor
-0.6
131
Tumor
-0.7
943
Tumor
-0.7
445
Tumor
-0.7
271
Tumor
-0.7
211
Tumor
-0.7
283
Tumor
-0.8
545
Tumor
-0.8
311
Tumor
-0.9
917
Tumor
-0.9
661
Tumor
-1.0
343
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
