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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NNT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
113.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
104.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
101.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
98.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
90.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
87.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
85.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
84.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
75.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
70.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
67.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
67.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
66.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
63.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
62.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
62.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
57.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
52.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
44.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
44.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
43.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
40.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
36.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NNT is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.8
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
131.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
112.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
100.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
99.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
89.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
88.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
86.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
84.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
75.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
73.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
67.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
66.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
60.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
60.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
59.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
58.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
58.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
58.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
57.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
56.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
53.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
53.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
53.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
51.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
51.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
50.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
48.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
47.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
47.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
46.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
44.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
43.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
42.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
41.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
39.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
36.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.4
513
Tumor
0.9
515
Tumor
0.9
745
Tumor
0.9
571
Tumor
0.8
868
Normal
0.8
915
Tumor
0.7
636
Normal
0.7
227
Tumor
0.6
912
Normal
0.6
746
Normal
0.6
481
Tumor
0.6
648
Normal
0.6
777
Tumor
0.6
452
Normal
0.6
918
Normal
0.6
864
Normal
0.6
824
Normal
0.6
756
Normal
0.5
514
Normal
0.5
448
Normal
0.5
615
Tumor
0.5
462
Normal
0.5
421
Tumor
0.5
466
Normal
0.5
698
Normal
0.5
422
Normal
0.5
867
Tumor
0.5
564
Normal
0.5
414
Normal
0.5
862
Normal
0.5
172
Normal
0.5
558
Normal
0.5
523
Tumor
0.5
361
Tumor
0.5
528
Normal
0.5
738
Normal
0.5
1014
Normal
0.5
944
Normal
0.5
1016
Normal
0.4
1022
Normal
0.4
728
Normal
0.4
392
Normal
0.4
364
Normal
0.4
228
Normal
0.4
786
Normal
0.4
526
Normal
0.4
482
Normal
0.4
852
Normal
0.4
436
Normal
0.4
424
Normal
0.4
816
Normal
0.4
723
Tumor
0.4
494
Normal
0.4
954
Normal
0.4
162
Normal
0.4
1028
Normal
0.4
878
Normal
0.4
491
Tumor
0.4
416
Normal
0.4
616
Normal
0.4
714
Normal
0.4
922
Normal
0.4
866
Normal
0.4
618
Normal
0.4
394
Normal
0.4
534
Normal
0.4
955
Tumor
0.4
968
Normal
0.4
1041
Tumor
0.4
284
Normal
0.4
978
Normal
0.4
365
Tumor
0.4
628
Normal
0.4
914
Normal
0.4
426
Normal
0.4
546
Normal
0.4
328
Normal
0.4
465
Tumor
0.3
432
Normal
0.3
858
Normal
0.3
212
Normal
0.3
742
Normal
0.3
468
Normal
0.3
982
Normal
0.3
358
Normal
0.3
286
Normal
0.3
686
Normal
0.3
722
Normal
0.3
557
Tumor
0.3
128
Normal
0.3
232
Normal
0.3
488
Normal
0.3
818
Normal
0.3
916
Normal
0.3
1042
Normal
0.3
662
Normal
0.3
924
Normal
0.3
412
Normal
0.3
958
Normal
0.3
356
Normal
0.3
984
Normal
0.3
778
Normal
0.3
428
Normal
0.3
484
Normal
0.3
214
Normal
0.3
874
Normal
0.3
976
Normal
0.3
148
Normal
0.3
258
Normal
0.3
431
Tumor
0.3
298
Normal
0.3
196
Normal
0.3
1032
Normal
0.3
964
Normal
0.3
472
Normal
0.3
696
Normal
0.3
278
Normal
0.3
911
Tumor
0.3
257
Tumor
0.2
518
Normal
0.2
873
Tumor
0.2
423
Tumor
0.2
1046
Normal
0.2
938
Normal
0.2
744
Normal
0.2
642
Normal
0.2
1026
Normal
0.2
366
Normal
0.2
132
Normal
0.2
388
Normal
0.2
464
Normal
0.2
474
Normal
0.2
572
Normal
0.2
1013
Tumor
0.2
261
Tumor
0.2
111
Normal
0.2
1044
Normal
0.2
882
Normal
0.2
516
Normal
0.2
332
Normal
0.2
952
Normal
0.2
218
Normal
0.2
527
Tumor
0.2
477
Tumor
0.2
538
Normal
0.2
966
Normal
0.2
142
Normal
0.2
574
Normal
0.2
554
Normal
0.2
716
Normal
0.2
884
Normal
0.2
195
Tumor
0.2
926
Normal
0.2
186
Normal
0.2
342
Normal
0.2
411
Tumor
0.2
114
Normal
0.2
956
Normal
0.2
354
Normal
0.2
312
Normal
0.2
222
Normal
0.1
224
Normal
0.1
136
Normal
0.1
446
Normal
0.1
568
Normal
0.1
376
Normal
0.1
262
Normal
0.1
272
Normal
0.1
863
Tumor
0.1
384
Normal
0.1
1027
Tumor
0.1
138
Normal
0.1
664
Normal
0.1
478
Normal
0.1
524
Normal
0.1
1043
Tumor
0.1
161
Tumor
0.1
314
Normal
0.1
492
Normal
0.1
145
Tumor
0.1
124
Normal
0.1
923
Tumor
0.1
268
Normal
0.1
857
Tumor
0.1
823
Tumor
0.1
456
Normal
0.0
362
Normal
0.0
191
Tumor
0.0
147
Tumor
0.0
127
Tumor
0.0
461
Tumor
0.0
357
Tumor
0.0
368
Normal
0.0
267
Tumor
0.0
666
Normal
0.0
813
Tumor
0.0
188
Normal
0.0
344
Normal
0.0
981
Tumor
0.0
126
Normal
0.0
352
Normal
0.0
672
Normal
0.0
386
Normal
0.0
396
Normal
0.0
444
Normal
0.0
393
Tumor
-0.1
695
Tumor
-0.1
434
Normal
-0.1
353
Tumor
-0.1
977
Tumor
-0.1
187
Tumor
-0.1
487
Tumor
-0.1
146
Normal
-0.1
785
Tumor
-0.1
463
Tumor
-0.2
953
Tumor
-0.2
957
Tumor
-0.2
741
Tumor
-0.2
563
Tumor
-0.2
536
Normal
-0.2
713
Tumor
-0.2
213
Tumor
-0.2
483
Tumor
-0.2
925
Tumor
-0.2
635
Tumor
-0.2
1045
Tumor
-0.2
375
Tumor
-0.3
498
Normal
-0.3
533
Tumor
-0.3
313
Tumor
-0.3
883
Tumor
-0.3
814
Normal
-0.3
1015
Tumor
-0.3
137
Tumor
-0.3
1021
Tumor
-0.3
937
Tumor
-0.3
493
Tumor
-0.3
433
Tumor
-0.3
415
Tumor
-0.3
727
Tumor
-0.4
455
Tumor
-0.4
113
Tumor
-0.4
721
Tumor
-0.4
171
Tumor
-0.4
383
Tumor
-0.4
123
Tumor
-0.4
755
Tumor
-0.4
327
Tumor
-0.4
861
Tumor
-0.4
231
Tumor
-0.4
217
Tumor
-0.4
1025
Tumor
-0.4
525
Tumor
-0.4
851
Tumor
-0.4
447
Tumor
-0.5
537
Tumor
-0.5
737
Tumor
-0.5
192
Normal
-0.5
425
Tumor
-0.5
277
Tumor
-0.5
297
Tumor
-0.6
443
Tumor
-0.6
451
Tumor
-0.6
341
Tumor
-0.6
427
Tumor
-0.6
647
Tumor
-0.6
697
Tumor
-0.6
553
Tumor
-0.6
963
Tumor
-0.6
185
Tumor
-0.6
715
Tumor
-0.7
913
Tumor
-0.7
125
Tumor
-0.7
435
Tumor
-0.7
943
Tumor
-0.7
445
Tumor
-0.7
135
Tumor
-0.7
355
Tumor
-0.7
921
Tumor
-0.7
467
Tumor
-0.7
141
Tumor
-0.8
881
Tumor
-0.8
497
Tumor
-0.8
917
Tumor
-0.8
685
Tumor
-0.8
573
Tumor
-0.8
517
Tumor
-0.9
641
Tumor
-0.9
223
Tumor
-0.9
567
Tumor
-0.9
471
Tumor
-0.9
1031
Tumor
-0.9
865
Tumor
-0.9
663
Tumor
-0.9
665
Tumor
-0.9
473
Tumor
-1.0
112
Tumor
-1.0
221
Tumor
-1.0
617
Tumor
-1.0
975
Tumor
-1.0
967
Tumor
-1.1
271
Tumor
-1.1
363
Tumor
-1.1
545
Tumor
-1.1
391
Tumor
-1.2
951
Tumor
-1.2
131
Tumor
-1.2
367
Tumor
-1.2
724
Normal
-1.3
311
Tumor
-1.3
351
Tumor
-1.3
815
Tumor
-1.3
671
Tumor
-1.3
283
Tumor
-1.4
983
Tumor
-1.4
743
Tumor
-1.4
877
Tumor
-1.5
817
Tumor
-1.5
343
Tumor
-1.5
395
Tumor
-1.5
965
Tumor
-1.5
285
Tumor
-1.5
331
Tumor
-1.6
387
Tumor
-1.6
413
Tumor
-1.6
211
Tumor
-1.7
385
Tumor
-1.9
535
Tumor
-1.9
661
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
