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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN2A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN2A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.4
685
Tumor
1.1
443
Tumor
0.7
351
Tumor
0.7
1025
Tumor
0.7
433
Tumor
0.7
353
Tumor
0.7
387
Tumor
0.7
127
Tumor
0.7
112
Tumor
0.7
123
Tumor
0.7
925
Tumor
0.6
171
Tumor
0.6
553
Tumor
0.6
467
Tumor
0.6
695
Tumor
0.6
523
Tumor
0.6
341
Tumor
0.5
367
Tumor
0.5
823
Tumor
0.5
487
Tumor
0.5
977
Tumor
0.5
455
Tumor
0.5
517
Tumor
0.5
741
Tumor
0.5
1021
Tumor
0.5
431
Tumor
0.4
344
Normal
0.4
213
Tumor
0.4
635
Tumor
0.4
721
Tumor
0.4
1041
Tumor
0.4
261
Tumor
0.4
824
Normal
0.4
343
Tumor
0.4
113
Tumor
0.4
686
Normal
0.4
191
Tumor
0.4
445
Tumor
0.4
527
Tumor
0.4
366
Normal
0.4
383
Tumor
0.4
362
Normal
0.4
877
Tumor
0.3
114
Normal
0.3
257
Tumor
0.3
128
Normal
0.3
376
Normal
0.3
954
Normal
0.3
665
Tumor
0.3
937
Tumor
0.3
815
Tumor
0.3
384
Normal
0.3
554
Normal
0.3
968
Normal
0.3
124
Normal
0.3
388
Normal
0.3
574
Normal
0.3
867
Tumor
0.3
564
Normal
0.3
956
Normal
0.3
957
Tumor
0.3
192
Normal
0.3
883
Tumor
0.3
922
Normal
0.3
231
Tumor
0.3
111
Normal
0.3
715
Tumor
0.3
436
Normal
0.3
131
Tumor
0.3
618
Normal
0.3
125
Tumor
0.2
391
Tumor
0.2
452
Normal
0.2
385
Tumor
0.2
421
Tumor
0.2
227
Tumor
0.2
777
Tumor
0.2
456
Normal
0.2
955
Tumor
0.2
396
Normal
0.2
938
Normal
0.2
432
Normal
0.2
671
Tumor
0.2
126
Normal
0.2
386
Normal
0.2
258
Normal
0.2
861
Tumor
0.2
526
Normal
0.2
672
Normal
0.2
964
Normal
0.2
361
Tumor
0.2
557
Tumor
0.2
1044
Normal
0.2
217
Tumor
0.2
145
Tumor
0.2
722
Normal
0.2
466
Normal
0.2
534
Normal
0.2
352
Normal
0.2
468
Normal
0.2
463
Tumor
0.2
185
Tumor
0.1
568
Normal
0.1
572
Normal
0.1
451
Tumor
0.1
963
Tumor
0.1
188
Normal
0.1
434
Normal
0.1
491
Tumor
0.1
327
Tumor
0.1
446
Normal
0.1
926
Normal
0.1
786
Normal
0.1
1028
Normal
0.1
816
Normal
0.1
818
Normal
0.1
1042
Normal
0.1
647
Tumor
0.1
277
Tumor
0.1
148
Normal
0.1
958
Normal
0.1
918
Normal
0.1
354
Normal
0.1
642
Normal
0.1
342
Normal
0.1
464
Normal
0.1
666
Normal
0.1
967
Tumor
0.1
218
Normal
0.1
884
Normal
0.1
728
Normal
0.1
473
Tumor
0.1
416
Normal
0.1
358
Normal
0.1
493
Tumor
0.1
636
Normal
0.1
172
Normal
0.1
982
Normal
0.1
494
Normal
0.1
448
Normal
0.0
873
Tumor
0.0
132
Normal
0.0
966
Normal
0.0
627
Tumor
0.0
392
Normal
0.0
1046
Normal
0.0
538
Normal
0.0
498
Normal
0.0
138
Normal
0.0
478
Normal
0.0
368
Normal
0.0
162
Normal
0.0
328
Normal
0.0
444
Normal
0.0
952
Normal
0.0
616
Normal
0.0
617
Tumor
0.0
723
Tumor
0.0
944
Normal
0.0
744
Normal
0.0
161
Tumor
0.0
482
Normal
0.0
474
Normal
0.0
628
Normal
0.0
214
Normal
0.0
518
Normal
0.0
146
Normal
0.0
664
Normal
0.0
716
Normal
0.0
187
Tumor
0.0
481
Tumor
0.0
394
Normal
0.0
488
Normal
0.0
537
Tumor
0.0
422
Normal
0.0
465
Tumor
0.0
778
Normal
0.0
648
Normal
0.0
313
Tumor
0.0
196
Normal
0.0
412
Normal
0.0
1022
Normal
0.0
696
Normal
0.0
1045
Tumor
0.0
524
Normal
0.0
528
Normal
0.0
742
Normal
0.0
222
Normal
0.0
428
Normal
0.0
882
Normal
0.0
851
Tumor
0.0
662
Normal
0.0
195
Tumor
0.0
724
Normal
0.0
497
Tumor
-0.1
558
Normal
-0.1
135
Tumor
-0.1
356
Normal
-0.1
1016
Normal
-0.1
813
Tumor
-0.1
546
Normal
-0.1
911
Tumor
-0.1
738
Normal
-0.1
271
Tumor
-0.1
232
Normal
-0.1
514
Normal
-0.1
852
Normal
-0.1
272
Normal
-0.1
221
Tumor
-0.1
435
Tumor
-0.1
211
Tumor
-0.1
355
Tumor
-0.1
858
Normal
-0.1
874
Normal
-0.1
756
Normal
-0.1
916
Normal
-0.1
413
Tumor
-0.1
714
Normal
-0.1
136
Normal
-0.1
914
Normal
-0.1
262
Normal
-0.1
472
Normal
-0.1
743
Tumor
-0.1
976
Normal
-0.1
414
Normal
-0.1
913
Tumor
-0.1
563
Tumor
-0.1
917
Tumor
-0.1
186
Normal
-0.1
268
Normal
-0.1
365
Tumor
-0.1
312
Normal
-0.1
516
Normal
-0.1
395
Tumor
-0.1
1026
Normal
-0.1
142
Normal
-0.1
484
Normal
-0.1
615
Tumor
-0.1
314
Normal
-0.1
868
Normal
-0.1
492
Normal
-0.1
425
Tumor
-0.1
727
Tumor
-0.1
862
Normal
-0.1
881
Tumor
-0.1
424
Normal
-0.2
311
Tumor
-0.2
981
Tumor
-0.2
912
Normal
-0.2
737
Tumor
-0.2
951
Tumor
-0.2
536
Normal
-0.2
286
Normal
-0.2
923
Tumor
-0.2
924
Normal
-0.2
462
Normal
-0.2
212
Normal
-0.2
573
Tumor
-0.2
415
Tumor
-0.2
697
Tumor
-0.2
663
Tumor
-0.2
814
Normal
-0.2
285
Tumor
-0.2
965
Tumor
-0.2
411
Tumor
-0.2
1014
Normal
-0.2
332
Normal
-0.2
746
Normal
-0.2
297
Tumor
-0.2
878
Normal
-0.2
857
Tumor
-0.2
866
Normal
-0.2
284
Normal
-0.2
1032
Normal
-0.2
1013
Tumor
-0.2
393
Tumor
-0.2
228
Normal
-0.2
364
Normal
-0.2
426
Normal
-0.3
447
Tumor
-0.3
863
Tumor
-0.3
423
Tumor
-0.3
1015
Tumor
-0.3
278
Normal
-0.3
224
Normal
-0.3
571
Tumor
-0.3
921
Tumor
-0.3
641
Tumor
-0.3
141
Tumor
-0.3
375
Tumor
-0.3
298
Normal
-0.3
357
Tumor
-0.3
483
Tumor
-0.3
915
Tumor
-0.3
698
Normal
-0.3
515
Tumor
-0.3
137
Tumor
-0.3
983
Tumor
-0.3
533
Tumor
-0.3
984
Normal
-0.3
975
Tumor
-0.3
1031
Tumor
-0.4
545
Tumor
-0.4
535
Tumor
-0.4
661
Tumor
-0.4
785
Tumor
-0.4
864
Normal
-0.4
513
Tumor
-0.4
147
Tumor
-0.4
477
Tumor
-0.4
1043
Tumor
-0.4
978
Normal
-0.4
223
Tumor
-0.4
953
Tumor
-0.4
713
Tumor
-0.4
525
Tumor
-0.5
427
Tumor
-0.5
283
Tumor
-0.5
755
Tumor
-0.5
943
Tumor
-0.5
267
Tumor
-0.5
817
Tumor
-0.5
331
Tumor
-0.5
865
Tumor
-0.5
567
Tumor
-0.5
745
Tumor
-0.5
363
Tumor
-0.6
471
Tumor
-0.6
461
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
