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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VEGFA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.00028
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
38%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
51%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
430.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
261.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
206.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
193.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
177.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
173.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
154.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
133.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
131.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
126.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
120.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
115.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
115.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
114.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
111.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
105.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
103.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
102.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
101.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
100.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
97.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
95.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
94.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
86.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
80.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
78.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
78.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
77.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
76.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
75.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
75.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
75.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
74.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
73.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
72.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
72.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
72.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
71.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
70.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
70.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
70.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
63.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
61.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
61.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
60.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
59.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
58.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
56.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
56.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
56.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
55.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
55.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
54.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
54.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
53.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
52.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
50.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
48.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
47.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
46.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
46.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
44.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
43.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VEGFA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0024
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
72%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.9
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
472.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
398.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
331.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
287.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
271.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
264.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
259.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
258.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
236.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
230.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
223.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
202.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
195.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
193.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
189.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
182.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
181.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
180.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
178.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
178.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
173.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
166.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
165.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
164.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
162.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
161.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
161.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
156.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
156.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
155.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
152.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
149.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
147.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
143.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
143.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
143.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
142.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
139.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
137.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
137.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
135.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
134.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
133.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
130.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
129.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
127.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
119.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
119.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
118.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
118.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
118.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
117.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
114.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
110.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
109.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
109.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
106.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
106.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
104.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
103.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
102.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
100.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
98.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
97.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
96.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
96.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
95.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
94.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
92.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
92.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
91.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
90.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
89.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
88.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
88.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
88.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
87.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
87.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
87.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
86.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
84.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
83.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
82.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
82.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
82.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
82.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
82.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
81.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
81.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
80.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
80.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
79.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
75.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
75.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
75.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
75.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
75.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
75.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
74.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
73.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
72.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
72.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
72.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
72.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
72.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
72.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
72.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
72.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
72.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
71.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
71.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
71.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
70.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
70.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
69.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
68.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
68.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
67.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
67.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
67.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
66.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
64.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
63.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
63.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
62.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
61.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
61.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
60.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
60.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
59.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
58.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
56.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
56.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
56.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
55.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
55.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
54.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
53.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
53.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
52.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
52.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
50.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
48.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
47.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
42.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
40.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
36.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
375
Tumor
2.6
343
Tumor
2.2
671
Tumor
1.7
937
Tumor
1.6
385
Tumor
1.6
663
Tumor
1.5
685
Tumor
1.4
573
Tumor
1.4
545
Tumor
1.1
981
Tumor
1.1
535
Tumor
1.1
527
Tumor
1.0
125
Tumor
0.9
523
Tumor
0.9
413
Tumor
0.9
877
Tumor
0.8
537
Tumor
0.8
517
Tumor
0.8
341
Tumor
0.8
393
Tumor
0.7
743
Tumor
0.7
425
Tumor
0.7
342
Normal
0.7
395
Tumor
0.6
367
Tumor
0.6
313
Tumor
0.6
943
Tumor
0.5
951
Tumor
0.5
953
Tumor
0.5
513
Tumor
0.5
1025
Tumor
0.5
331
Tumor
0.4
344
Normal
0.4
715
Tumor
0.4
352
Normal
0.4
567
Tumor
0.4
358
Normal
0.4
884
Normal
0.4
314
Normal
0.3
912
Normal
0.3
473
Tumor
0.3
387
Tumor
0.3
1016
Normal
0.3
721
Tumor
0.3
142
Normal
0.2
982
Normal
0.2
697
Tumor
0.2
391
Tumor
0.2
332
Normal
0.2
1026
Normal
0.2
1031
Tumor
0.2
882
Normal
0.2
435
Tumor
0.2
984
Normal
0.2
526
Normal
0.1
278
Normal
0.1
132
Normal
0.1
368
Normal
0.1
354
Normal
0.1
1015
Tumor
0.1
424
Normal
0.1
428
Normal
0.1
536
Normal
0.1
312
Normal
0.0
913
Tumor
0.0
696
Normal
0.0
1046
Normal
0.0
447
Tumor
0.0
1014
Normal
0.0
414
Normal
0.0
136
Normal
0.0
277
Tumor
0.0
396
Normal
0.0
553
Tumor
0.0
376
Normal
0.0
422
Normal
0.0
353
Tumor
0.0
297
Tumor
0.0
311
Tumor
0.0
1044
Normal
0.0
572
Normal
0.0
366
Normal
0.0
647
Tumor
0.0
716
Normal
0.0
534
Normal
-0.1
528
Normal
-0.1
298
Normal
-0.1
394
Normal
-0.1
648
Normal
-0.1
131
Tumor
-0.1
1022
Normal
-0.1
574
Normal
-0.1
665
Tumor
-0.1
878
Normal
-0.1
446
Normal
-0.1
146
Normal
-0.1
666
Normal
-0.1
977
Tumor
-0.1
433
Tumor
-0.1
383
Tumor
-0.1
695
Tumor
-0.1
138
Normal
-0.1
538
Normal
-0.1
392
Normal
-0.1
722
Normal
-0.1
978
Normal
-0.1
1045
Tumor
-0.1
431
Tumor
-0.1
1041
Tumor
-0.1
571
Tumor
-0.1
672
Normal
-0.1
386
Normal
-0.1
448
Normal
-0.1
1032
Normal
-0.2
558
Normal
-0.2
714
Normal
-0.2
361
Tumor
-0.2
426
Normal
-0.2
568
Normal
-0.2
914
Normal
-0.2
461
Tumor
-0.2
365
Tumor
-0.2
664
Normal
-0.2
661
Tumor
-0.2
662
Normal
-0.2
516
Normal
-0.2
145
Tumor
-0.2
564
Normal
-0.2
111
Normal
-0.2
384
Normal
-0.2
1042
Normal
-0.2
524
Normal
-0.2
1027
Tumor
-0.2
533
Tumor
-0.2
477
Tumor
-0.2
443
Tumor
-0.3
698
Normal
-0.3
1043
Tumor
-0.3
952
Normal
-0.3
474
Normal
-0.3
445
Tumor
-0.3
563
Tumor
-0.3
515
Tumor
-0.3
351
Tumor
-0.3
482
Normal
-0.3
883
Tumor
-0.3
472
Normal
-0.3
436
Normal
-0.3
128
Normal
-0.3
113
Tumor
-0.3
518
Normal
-0.3
427
Tumor
-0.3
554
Normal
-0.3
557
Tumor
-0.3
1021
Tumor
-0.3
126
Normal
-0.3
114
Normal
-0.3
135
Tumor
-0.3
514
Normal
-0.4
388
Normal
-0.4
911
Tumor
-0.4
137
Tumor
-0.4
983
Tumor
-0.4
444
Normal
-0.4
127
Tumor
-0.4
432
Normal
-0.4
686
Normal
-0.4
481
Tumor
-0.4
462
Normal
-0.4
742
Normal
-0.5
357
Tumor
-0.5
423
Tumor
-0.5
546
Normal
-0.5
362
Normal
-0.5
1028
Normal
-0.5
713
Tumor
-0.5
723
Tumor
-0.5
471
Tumor
-0.5
112
Tumor
-0.5
434
Normal
-0.6
955
Tumor
-0.6
744
Normal
-0.6
123
Tumor
-0.6
954
Normal
-0.6
124
Normal
-0.7
525
Tumor
-0.7
956
Normal
-0.7
421
Tumor
-0.7
478
Normal
-0.7
1013
Tumor
-0.7
727
Tumor
-0.7
737
Tumor
-0.7
881
Tumor
-0.8
728
Normal
-0.8
938
Normal
-0.8
141
Tumor
-0.8
944
Normal
-0.9
741
Tumor
-0.9
738
Normal
-1.0
724
Normal
-1.1
231
Tumor
N/A
232
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
223
Tumor
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.