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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNPH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
142.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
455.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
436.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
420.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
393.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
387.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
379.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
365.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
360.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
356.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
352.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
350.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
350.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
326.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
324.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
310.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
308.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
308.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
305.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
303.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
290.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
289.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
284.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
283.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
277.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
274.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
263.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
261.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
258.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
256.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
254.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
253.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
252.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
249.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
249.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
241.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
241.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
232.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
229.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
225.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
225.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
225.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
222.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
222.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
219.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
219.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
219.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
215.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
214.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
210.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
210.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
210.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
207.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
204.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
203.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
200.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
198.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
198.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
198.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
197.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
196.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
196.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
195.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
193.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
192.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
189.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
189.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
188.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
187.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
185.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
185.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
179.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
179.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
179.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
178.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
178.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
178.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
176.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
175.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
175.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
175.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
175.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
174.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
173.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
173.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
173.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
172.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
172.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
171.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
171.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
170.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
170.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
169.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
168.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
168.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
168.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
167.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
166.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
164.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
164.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
163.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
163.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
162.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
161.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
161.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
161.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
160.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
159.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
159.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
158.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
158.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
156.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
156.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
155.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
154.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
154.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
154.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
153.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
153.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
152.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
151.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
151.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
150.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
150.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
150.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
150.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
149.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
148.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
148.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
148.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
148.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
147.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
147.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
147.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
146.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
145.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
145.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
145.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
144.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
144.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
144.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
143.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
143.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
143.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
142.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
142.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
142.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
142.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
142.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
142.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
141.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
141.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
139.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
139.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
138.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
138.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
138.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
138.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
137.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
136.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
136.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
135.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
135.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
135.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
135.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
135.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
134.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
133.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
132.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
132.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
132.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
131.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
131.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
131.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
131.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
130.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
130.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
129.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
129.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
128.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
128.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
128.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
126.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
126.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
126.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
126.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
126.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
126.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
126.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
125.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
125.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
125.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
125.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
124.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
123.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
123.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
123.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
122.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
122.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
122.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
122.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
121.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
121.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
121.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
121.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
121.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
120.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
118.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
118.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
118.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
118.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
118.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
117.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
116.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
116.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
115.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
114.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
114.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
112.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
112.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
112.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
111.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
111.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
111.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
109.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
109.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
109.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
109.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
108.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
108.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
108.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
107.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
107.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
106.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
106.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
105.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
105.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
105.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
104.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
104.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
104.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
104.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
103.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
101.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
101.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
101.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
101.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
101.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
100.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
100.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
100.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
100.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
100.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
100.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
100.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
99.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
99.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
99.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
98.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
98.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
98.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
97.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
97.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
97.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
95.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
95.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
95.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
94.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
93.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
91.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
91.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
90.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
90.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
89.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
88.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
88.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
87.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
87.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
87.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
87.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
86.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
86.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
86.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
86.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
85.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
85.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
84.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
84.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
84.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
84.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
84.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
82.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
80.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
79.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
79.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
79.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
79.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
79.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
78.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
77.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
75.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
75.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
75.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
75.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
72.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
72.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
72.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
72.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
72.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
71.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
71.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
70.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
69.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
69.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
67.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
65.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
65.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
65.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
61.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
61.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
59.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
58.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
57.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
55.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
54.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
54.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
49.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
46.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
44.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
1.3
695
Tumor
1.2
553
Tumor
0.8
261
Tumor
0.7
127
Tumor
0.7
1027
Tumor
0.7
1041
Tumor
0.6
615
Tumor
0.6
493
Tumor
0.6
467
Tumor
0.6
231
Tumor
0.6
1026
Normal
0.5
112
Tumor
0.5
128
Normal
0.5
663
Tumor
0.5
523
Tumor
0.5
481
Tumor
0.5
222
Normal
0.5
131
Tumor
0.4
342
Normal
0.4
715
Tumor
0.4
196
Normal
0.4
977
Tumor
0.4
123
Tumor
0.4
648
Normal
0.4
685
Tumor
0.4
482
Normal
0.4
394
Normal
0.4
664
Normal
0.4
877
Tumor
0.4
1046
Normal
0.4
124
Normal
0.4
393
Tumor
0.4
1025
Tumor
0.4
741
Tumor
0.4
456
Normal
0.4
546
Normal
0.4
132
Normal
0.4
426
Normal
0.4
635
Tumor
0.4
698
Normal
0.4
186
Normal
0.3
423
Tumor
0.3
535
Tumor
0.3
436
Normal
0.3
488
Normal
0.3
298
Normal
0.3
517
Tumor
0.3
376
Normal
0.3
353
Tumor
0.3
534
Normal
0.3
433
Tumor
0.3
332
Normal
0.3
445
Tumor
0.3
425
Tumor
0.3
351
Tumor
0.3
557
Tumor
0.3
278
Normal
0.3
464
Normal
0.3
1022
Normal
0.3
618
Normal
0.3
1032
Normal
0.3
172
Normal
0.3
358
Normal
0.3
385
Tumor
0.3
111
Normal
0.3
484
Normal
0.3
665
Tumor
0.3
915
Tumor
0.3
452
Normal
0.3
232
Normal
0.3
472
Normal
0.3
443
Tumor
0.2
354
Normal
0.2
221
Tumor
0.2
1042
Normal
0.2
952
Normal
0.2
818
Normal
0.2
435
Tumor
0.2
785
Tumor
0.2
366
Normal
0.2
964
Normal
0.2
722
Normal
0.2
272
Normal
0.2
982
Normal
0.2
968
Normal
0.2
723
Tumor
0.2
114
Normal
0.2
422
Normal
0.2
616
Normal
0.2
191
Tumor
0.2
642
Normal
0.2
446
Normal
0.2
368
Normal
0.2
466
Normal
0.2
267
Tumor
0.2
344
Normal
0.2
465
Tumor
0.2
938
Normal
0.2
314
Normal
0.2
392
Normal
0.2
388
Normal
0.2
926
Normal
0.2
858
Normal
0.2
214
Normal
0.2
944
Normal
0.2
714
Normal
0.2
352
Normal
0.2
424
Normal
0.2
428
Normal
0.2
955
Tumor
0.2
148
Normal
0.2
742
Normal
0.2
568
Normal
0.2
396
Normal
0.2
666
Normal
0.2
545
Tumor
0.2
271
Tumor
0.2
258
Normal
0.1
136
Normal
0.1
756
Normal
0.1
882
Normal
0.1
312
Normal
0.1
662
Normal
0.1
1044
Normal
0.1
1045
Tumor
0.1
628
Normal
0.1
1014
Normal
0.1
361
Tumor
0.1
824
Normal
0.1
142
Normal
0.1
746
Normal
0.1
976
Normal
0.1
696
Normal
0.1
432
Normal
0.1
636
Normal
0.1
738
Normal
0.1
494
Normal
0.1
815
Tumor
0.1
922
Normal
0.1
421
Tumor
0.1
728
Normal
0.1
146
Normal
0.1
574
Normal
0.1
867
Tumor
0.1
918
Normal
0.1
483
Tumor
0.1
953
Tumor
0.1
262
Normal
0.1
966
Normal
0.1
538
Normal
0.1
462
Normal
0.1
386
Normal
0.1
217
Tumor
0.1
912
Normal
0.1
963
Tumor
0.1
468
Normal
0.1
564
Normal
0.1
744
Normal
0.1
213
Tumor
0.1
862
Normal
0.1
477
Tumor
0.1
958
Normal
0.1
672
Normal
0.1
364
Normal
0.0
356
Normal
0.0
362
Normal
0.0
286
Normal
0.0
737
Tumor
0.0
925
Tumor
0.0
554
Normal
0.0
716
Normal
0.0
228
Normal
0.0
745
Tumor
0.0
138
Normal
0.0
924
Normal
0.0
1016
Normal
0.0
518
Normal
0.0
195
Tumor
0.0
218
Normal
0.0
978
Normal
0.0
145
Tumor
0.0
981
Tumor
0.0
921
Tumor
0.0
778
Normal
0.0
878
Normal
0.0
384
Normal
0.0
171
Tumor
0.0
192
Normal
0.0
786
Normal
0.0
984
Normal
0.0
1028
Normal
0.0
572
Normal
0.0
268
Normal
0.0
257
Tumor
0.0
357
Tumor
0.0
341
Tumor
0.0
416
Normal
0.0
363
Tumor
0.0
463
Tumor
0.0
387
Tumor
0.0
448
Normal
0.0
558
Normal
0.0
954
Normal
0.0
671
Tumor
0.0
1043
Tumor
0.0
126
Normal
0.0
816
Normal
0.0
474
Normal
0.0
455
Tumor
0.0
823
Tumor
0.0
956
Normal
-0.1
957
Tumor
-0.1
313
Tumor
-0.1
444
Normal
-0.1
515
Tumor
-0.1
498
Normal
-0.1
516
Normal
-0.1
916
Normal
-0.1
187
Tumor
-0.1
866
Normal
-0.1
478
Normal
-0.1
528
Normal
-0.1
873
Tumor
-0.1
536
Normal
-0.1
526
Normal
-0.1
415
Tumor
-0.1
864
Normal
-0.1
914
Normal
-0.1
641
Tumor
-0.1
434
Normal
-0.1
284
Normal
-0.1
355
Tumor
-0.1
686
Normal
-0.1
451
Tumor
-0.1
884
Normal
-0.1
328
Normal
-0.2
563
Tumor
-0.2
852
Normal
-0.2
113
Tumor
-0.2
147
Tumor
-0.2
861
Tumor
-0.2
755
Tumor
-0.2
514
Normal
-0.2
857
Tumor
-0.2
185
Tumor
-0.2
412
Normal
-0.2
865
Tumor
-0.2
297
Tumor
-0.2
951
Tumor
-0.2
491
Tumor
-0.2
874
Normal
-0.2
975
Tumor
-0.2
137
Tumor
-0.2
224
Normal
-0.2
627
Tumor
-0.2
727
Tumor
-0.2
1021
Tumor
-0.2
395
Tumor
-0.2
881
Tumor
-0.2
277
Tumor
-0.2
414
Normal
-0.3
527
Tumor
-0.3
212
Normal
-0.3
135
Tumor
-0.3
524
Normal
-0.3
923
Tumor
-0.3
777
Tumor
-0.3
661
Tumor
-0.3
188
Normal
-0.3
492
Normal
-0.3
814
Normal
-0.3
331
Tumor
-0.3
868
Normal
-0.3
851
Tumor
-0.3
367
Tumor
-0.3
571
Tumor
-0.3
227
Tumor
-0.3
497
Tumor
-0.3
617
Tumor
-0.3
883
Tumor
-0.3
383
Tumor
-0.3
473
Tumor
-0.3
343
Tumor
-0.3
375
Tumor
-0.3
917
Tumor
-0.3
365
Tumor
-0.3
141
Tumor
-0.3
911
Tumor
-0.3
743
Tumor
-0.3
125
Tumor
-0.4
447
Tumor
-0.4
813
Tumor
-0.4
311
Tumor
-0.4
427
Tumor
-0.4
411
Tumor
-0.4
413
Tumor
-0.4
967
Tumor
-0.4
1031
Tumor
-0.4
471
Tumor
-0.4
697
Tumor
-0.4
391
Tumor
-0.4
567
Tumor
-0.5
327
Tumor
-0.5
162
Normal
-0.5
223
Tumor
-0.5
937
Tumor
-0.5
1015
Tumor
-0.5
461
Tumor
-0.5
721
Tumor
-0.5
1013
Tumor
-0.5
983
Tumor
-0.5
513
Tumor
-0.5
525
Tumor
-0.6
817
Tumor
-0.6
537
Tumor
-0.6
913
Tumor
-0.6
724
Normal
-0.6
533
Tumor
-0.6
573
Tumor
-0.6
713
Tumor
-0.7
965
Tumor
-0.7
647
Tumor
-0.7
487
Tumor
-0.7
863
Tumor
-0.8
943
Tumor
-0.8
285
Tumor
-0.9
211
Tumor
-0.9
161
Tumor
-0.9
283
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.