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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTK7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
143.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTK7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.2
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.6
671
Tumor
2.2
331
Tumor
1.8
363
Tumor
1.7
727
Tumor
1.7
351
Tumor
1.6
355
Tumor
1.5
425
Tumor
1.4
497
Tumor
1.4
285
Tumor
1.3
951
Tumor
1.3
817
Tumor
1.3
385
Tumor
1.2
917
Tumor
1.2
813
Tumor
1.2
517
Tumor
1.2
463
Tumor
1.1
367
Tumor
1.1
545
Tumor
1.0
492
Normal
1.0
444
Normal
1.0
413
Tumor
0.9
455
Tumor
0.9
387
Tumor
0.9
211
Tumor
0.9
311
Tumor
0.9
743
Tumor
0.9
491
Tumor
0.9
478
Normal
0.8
357
Tumor
0.8
923
Tumor
0.8
343
Tumor
0.8
536
Normal
0.8
192
Normal
0.8
814
Normal
0.8
383
Tumor
0.8
525
Tumor
0.8
127
Tumor
0.7
695
Tumor
0.7
185
Tumor
0.7
983
Tumor
0.7
447
Tumor
0.6
1031
Tumor
0.6
943
Tumor
0.6
161
Tumor
0.6
713
Tumor
0.6
697
Tumor
0.5
975
Tumor
0.5
571
Tumor
0.5
131
Tumor
0.5
268
Normal
0.5
881
Tumor
0.5
227
Tumor
0.5
341
Tumor
0.5
421
Tumor
0.5
221
Tumor
0.5
465
Tumor
0.5
498
Normal
0.5
471
Tumor
0.5
1025
Tumor
0.5
313
Tumor
0.4
538
Normal
0.4
963
Tumor
0.4
737
Tumor
0.4
563
Tumor
0.4
535
Tumor
0.4
123
Tumor
0.4
213
Tumor
0.3
874
Normal
0.3
375
Tumor
0.3
921
Tumor
0.3
297
Tumor
0.3
277
Tumor
0.3
641
Tumor
0.3
785
Tumor
0.3
386
Normal
0.3
146
Normal
0.3
916
Normal
0.3
815
Tumor
0.3
461
Tumor
0.2
312
Normal
0.2
415
Tumor
0.2
188
Normal
0.2
857
Tumor
0.1
384
Normal
0.1
883
Tumor
0.1
537
Tumor
0.1
672
Normal
0.1
524
Normal
0.1
516
Normal
0.1
1044
Normal
0.1
224
Normal
0.1
976
Normal
0.0
271
Tumor
0.0
958
Normal
0.0
138
Normal
0.0
558
Normal
0.0
396
Normal
0.0
394
Normal
0.0
1045
Tumor
0.0
262
Normal
0.0
412
Normal
0.0
352
Normal
0.0
574
Normal
0.0
852
Normal
0.0
126
Normal
0.0
364
Normal
0.0
388
Normal
0.0
195
Tumor
0.0
434
Normal
0.0
924
Normal
0.0
411
Tumor
0.0
365
Tumor
-0.1
212
Normal
-0.1
145
Tumor
-0.1
171
Tumor
-0.1
572
Normal
-0.1
1032
Normal
-0.1
332
Normal
-0.1
1042
Normal
-0.1
722
Normal
-0.1
716
Normal
-0.1
392
Normal
-0.1
884
Normal
-0.1
284
Normal
-0.1
816
Normal
-0.1
416
Normal
-0.1
984
Normal
-0.1
756
Normal
-0.1
148
Normal
-0.2
187
Tumor
-0.2
232
Normal
-0.2
977
Tumor
-0.2
823
Tumor
-0.2
214
Normal
-0.2
366
Normal
-0.2
191
Tumor
-0.2
564
Normal
-0.2
272
Normal
-0.2
137
Tumor
-0.2
553
Tumor
-0.2
493
Tumor
-0.2
714
Normal
-0.2
1028
Normal
-0.2
918
Normal
-0.2
982
Normal
-0.2
172
Normal
-0.2
721
Tumor
-0.2
546
Normal
-0.3
424
Normal
-0.3
968
Normal
-0.3
445
Tumor
-0.3
956
Normal
-0.3
141
Tumor
-0.3
354
Normal
-0.3
162
Normal
-0.3
978
Normal
-0.3
223
Tumor
-0.3
258
Normal
-0.3
314
Normal
-0.3
568
Normal
-0.3
635
Tumor
-0.3
878
Normal
-0.3
433
Tumor
-0.3
456
Normal
-0.3
1022
Normal
-0.3
926
Normal
-0.3
426
Normal
-0.3
448
Normal
-0.3
528
Normal
-0.3
278
Normal
-0.3
554
Normal
-0.3
427
Tumor
-0.3
186
Normal
-0.3
1026
Normal
-0.3
744
Normal
-0.3
228
Normal
-0.3
344
Normal
-0.3
467
Tumor
-0.3
111
Normal
-0.3
696
Normal
-0.3
422
Normal
-0.3
474
Normal
-0.4
686
Normal
-0.4
114
Normal
-0.4
515
Tumor
-0.4
1046
Normal
-0.4
534
Normal
-0.4
483
Tumor
-0.4
662
Normal
-0.4
393
Tumor
-0.4
368
Normal
-0.4
124
Normal
-0.4
966
Normal
-0.4
494
Normal
-0.4
136
Normal
-0.4
468
Normal
-0.4
922
Normal
-0.4
464
Normal
-0.4
786
Normal
-0.4
443
Tumor
-0.4
362
Normal
-0.4
698
Normal
-0.4
472
Normal
-0.4
286
Normal
-0.4
1013
Tumor
-0.4
391
Tumor
-0.4
328
Normal
-0.4
446
Normal
-0.4
858
Normal
-0.4
112
Tumor
-0.5
728
Normal
-0.5
882
Normal
-0.5
261
Tumor
-0.5
518
Normal
-0.5
514
Normal
-0.5
664
Normal
-0.5
428
Normal
-0.5
925
Tumor
-0.5
738
Normal
-0.5
868
Normal
-0.5
358
Normal
-0.5
327
Tumor
-0.5
356
Normal
-0.5
466
Normal
-0.5
218
Normal
-0.5
353
Tumor
-0.5
952
Normal
-0.5
866
Normal
-0.5
135
Tumor
-0.5
628
Normal
-0.5
217
Tumor
-0.5
414
Normal
-0.5
954
Normal
-0.5
462
Normal
-0.5
527
Tumor
-0.6
642
Normal
-0.6
128
Normal
-0.6
666
Normal
-0.6
818
Normal
-0.6
196
Normal
-0.6
361
Tumor
-0.6
488
Normal
-0.6
1015
Tumor
-0.6
267
Tumor
-0.6
914
Normal
-0.6
913
Tumor
-0.6
526
Normal
-0.6
723
Tumor
-0.6
376
Normal
-0.6
824
Normal
-0.6
125
Tumor
-0.6
395
Tumor
-0.6
482
Normal
-0.6
132
Normal
-0.6
867
Tumor
-0.6
742
Normal
-0.6
222
Normal
-0.6
298
Normal
-0.6
342
Normal
-0.6
513
Tumor
-0.6
745
Tumor
-0.6
1014
Normal
-0.7
142
Normal
-0.7
484
Normal
-0.7
944
Normal
-0.7
778
Normal
-0.7
557
Tumor
-0.7
573
Tumor
-0.7
627
Tumor
-0.7
231
Tumor
-0.7
938
Normal
-0.7
864
Normal
-0.7
452
Normal
-0.7
912
Normal
-0.7
964
Normal
-0.7
423
Tumor
-0.7
915
Tumor
-0.7
1016
Normal
-0.7
746
Normal
-0.8
432
Normal
-0.8
1043
Tumor
-0.8
451
Tumor
-0.8
618
Normal
-0.8
957
Tumor
-0.8
147
Tumor
-0.8
647
Tumor
-0.8
473
Tumor
-0.8
113
Tumor
-0.8
715
Tumor
-0.8
487
Tumor
-0.8
862
Normal
-0.8
617
Tumor
-0.9
431
Tumor
-0.9
481
Tumor
-0.9
965
Tumor
-0.9
257
Tumor
-0.9
648
Normal
-0.9
567
Tumor
-0.9
477
Tumor
-0.9
436
Normal
-0.9
755
Tumor
-1.0
777
Tumor
-1.0
283
Tumor
-1.0
873
Tumor
-1.0
981
Tumor
-1.0
863
Tumor
-1.0
665
Tumor
-1.0
616
Normal
-1.0
435
Tumor
-1.1
533
Tumor
-1.1
615
Tumor
-1.1
861
Tumor
-1.1
955
Tumor
-1.1
1021
Tumor
-1.1
685
Tumor
-1.2
851
Tumor
-1.2
937
Tumor
-1.2
911
Tumor
-1.2
1041
Tumor
-1.2
636
Normal
-1.2
523
Tumor
-1.3
724
Normal
-1.3
953
Tumor
-1.3
661
Tumor
-1.3
1027
Tumor
-1.4
741
Tumor
-1.4
663
Tumor
-1.4
865
Tumor
-1.4
967
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
