We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5D is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
91.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
60.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
663
Tumor
1.0
425
Tumor
0.8
131
Tumor
0.8
112
Tumor
0.7
553
Tumor
0.7
277
Tumor
0.7
977
Tumor
0.7
451
Tumor
0.6
635
Tumor
0.6
433
Tumor
0.6
1027
Tumor
0.6
261
Tumor
0.6
493
Tumor
0.6
171
Tumor
0.6
221
Tumor
0.5
571
Tumor
0.5
497
Tumor
0.5
877
Tumor
0.5
127
Tumor
0.5
865
Tumor
0.4
285
Tumor
0.4
695
Tumor
0.4
411
Tumor
0.4
1025
Tumor
0.4
231
Tumor
0.4
431
Tumor
0.4
737
Tumor
0.4
715
Tumor
0.4
685
Tumor
0.4
743
Tumor
0.4
271
Tumor
0.4
385
Tumor
0.3
923
Tumor
0.3
213
Tumor
0.3
123
Tumor
0.3
815
Tumor
0.3
491
Tumor
0.3
671
Tumor
0.3
313
Tumor
0.3
1013
Tumor
0.3
557
Tumor
0.3
375
Tumor
0.3
147
Tumor
0.3
921
Tumor
0.3
467
Tumor
0.3
527
Tumor
0.3
463
Tumor
0.3
523
Tumor
0.3
741
Tumor
0.3
823
Tumor
0.3
727
Tumor
0.3
331
Tumor
0.3
455
Tumor
0.2
665
Tumor
0.2
661
Tumor
0.2
1043
Tumor
0.2
957
Tumor
0.2
746
Normal
0.2
357
Tumor
0.2
517
Tumor
0.2
617
Tumor
0.2
814
Normal
0.2
641
Tumor
0.2
647
Tumor
0.2
257
Tumor
0.2
435
Tumor
0.2
222
Normal
0.2
361
Tumor
0.2
533
Tumor
0.2
545
Tumor
0.2
267
Tumor
0.2
881
Tumor
0.2
362
Normal
0.2
298
Normal
0.2
1031
Tumor
0.2
745
Tumor
0.2
813
Tumor
0.2
423
Tumor
0.1
742
Normal
0.1
353
Tumor
0.1
111
Normal
0.1
785
Tumor
0.1
616
Normal
0.1
424
Normal
0.1
217
Tumor
0.1
272
Normal
0.1
1021
Tumor
0.1
426
Normal
0.1
413
Tumor
0.1
468
Normal
0.1
432
Normal
0.1
351
Tumor
0.1
728
Normal
0.1
186
Normal
0.1
196
Normal
0.1
738
Normal
0.1
434
Normal
0.1
883
Tumor
0.1
192
Normal
0.1
358
Normal
0.1
214
Normal
0.1
723
Tumor
0.1
744
Normal
0.1
141
Tumor
0.1
422
Normal
0.1
975
Tumor
0.1
714
Normal
0.1
342
Normal
0.1
456
Normal
0.1
414
Normal
0.1
135
Tumor
0.1
483
Tumor
0.1
278
Normal
0.1
554
Normal
0.1
627
Tumor
0.1
436
Normal
0.1
161
Tumor
0.1
388
Normal
0.1
574
Normal
0.1
518
Normal
0.1
863
Tumor
0.1
777
Tumor
0.1
227
Tumor
0.1
195
Tumor
0.1
452
Normal
0.1
283
Tumor
0.1
662
Normal
0.1
128
Normal
0.1
114
Normal
0.1
515
Tumor
0.1
473
Tumor
0.1
648
Normal
0.1
415
Tumor
0.1
724
Normal
0.1
387
Tumor
0.1
447
Tumor
0.0
937
Tumor
0.0
867
Tumor
0.0
332
Normal
0.0
218
Normal
0.0
1041
Tumor
0.0
446
Normal
0.0
462
Normal
0.0
188
Normal
0.0
376
Normal
0.0
185
Tumor
0.0
191
Tumor
0.0
343
Tumor
0.0
125
Tumor
0.0
816
Normal
0.0
481
Tumor
0.0
862
Normal
0.0
366
Normal
0.0
355
Tumor
0.0
312
Normal
0.0
461
Tumor
0.0
146
Normal
0.0
297
Tumor
0.0
873
Tumor
0.0
722
Normal
0.0
136
Normal
0.0
564
Normal
0.0
618
Normal
0.0
386
Normal
0.0
187
Tumor
0.0
126
Normal
0.0
1026
Normal
0.0
286
Normal
0.0
1016
Normal
0.0
138
Normal
0.0
982
Normal
0.0
232
Normal
0.0
573
Tumor
0.0
363
Tumor
0.0
384
Normal
0.0
922
Normal
0.0
368
Normal
0.0
664
Normal
0.0
444
Normal
0.0
568
Normal
0.0
951
Tumor
0.0
965
Tumor
0.0
392
Normal
0.0
914
Normal
0.0
421
Tumor
0.0
268
Normal
0.0
628
Normal
0.0
148
Normal
0.0
262
Normal
0.0
284
Normal
0.0
132
Normal
0.0
224
Normal
0.0
394
Normal
0.0
864
Normal
0.0
328
Normal
0.0
926
Normal
0.0
393
Tumor
0.0
636
Normal
0.0
944
Normal
0.0
525
Tumor
0.0
1022
Normal
0.0
817
Tumor
0.0
642
Normal
0.0
484
Normal
0.0
472
Normal
0.0
824
Normal
0.0
314
Normal
0.0
482
Normal
0.0
142
Normal
0.0
546
Normal
0.0
857
Tumor
0.0
466
Normal
0.0
428
Normal
0.0
228
Normal
0.0
471
Tumor
0.0
955
Tumor
0.0
866
Normal
0.0
956
Normal
0.0
851
Tumor
0.0
137
Tumor
0.0
756
Normal
0.0
445
Tumor
0.0
258
Normal
0.0
365
Tumor
-0.1
396
Normal
-0.1
344
Normal
-0.1
696
Normal
-0.1
964
Normal
-0.1
938
Normal
-0.1
538
Normal
-0.1
852
Normal
-0.1
474
Normal
-0.1
952
Normal
-0.1
755
Tumor
-0.1
1028
Normal
-0.1
354
Normal
-0.1
716
Normal
-0.1
528
Normal
-0.1
917
Tumor
-0.1
778
Normal
-0.1
416
Normal
-0.1
494
Normal
-0.1
924
Normal
-0.1
916
Normal
-0.1
882
Normal
-0.1
918
Normal
-0.1
383
Tumor
-0.1
818
Normal
-0.1
878
Normal
-0.1
1044
Normal
-0.1
967
Tumor
-0.1
488
Normal
-0.1
352
Normal
-0.1
162
Normal
-0.1
113
Tumor
-0.1
911
Tumor
-0.1
356
Normal
-0.1
464
Normal
-0.1
698
Normal
-0.1
1015
Tumor
-0.1
364
Normal
-0.1
327
Tumor
-0.1
478
Normal
-0.1
341
Tumor
-0.1
124
Normal
-0.1
563
Tumor
-0.1
211
Tumor
-0.1
666
Normal
-0.1
1014
Normal
-0.1
311
Tumor
-0.1
786
Normal
-0.1
443
Tumor
-0.1
874
Normal
-0.1
912
Normal
-0.1
498
Normal
-0.1
572
Normal
-0.1
172
Normal
-0.1
1042
Normal
-0.1
984
Normal
-0.1
721
Tumor
-0.1
223
Tumor
-0.1
526
Normal
-0.1
448
Normal
-0.1
686
Normal
-0.1
943
Tumor
-0.1
558
Normal
-0.1
534
Normal
-0.1
367
Tumor
-0.1
427
Tumor
-0.1
615
Tumor
-0.1
391
Tumor
-0.1
1032
Normal
-0.1
915
Tumor
-0.1
516
Normal
-0.2
492
Normal
-0.2
465
Tumor
-0.2
958
Normal
-0.2
983
Tumor
-0.2
212
Normal
-0.2
968
Normal
-0.2
861
Tumor
-0.2
858
Normal
-0.2
966
Normal
-0.2
976
Normal
-0.2
868
Normal
-0.2
954
Normal
-0.2
953
Tumor
-0.2
412
Normal
-0.2
963
Tumor
-0.2
145
Tumor
-0.2
672
Normal
-0.2
884
Normal
-0.2
1045
Tumor
-0.2
913
Tumor
-0.2
477
Tumor
-0.2
537
Tumor
-0.2
524
Normal
-0.2
487
Tumor
-0.2
697
Tumor
-0.2
713
Tumor
-0.2
978
Normal
-0.2
567
Tumor
-0.3
1046
Normal
-0.3
514
Normal
-0.3
536
Normal
-0.3
925
Tumor
-0.3
981
Tumor
-0.3
395
Tumor
-0.4
513
Tumor
-0.4
535
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
