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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
621.9
nTPM
GTEx:
621.9
nTPM
FANTOM5:
174.6
Scaled Tags Per Million
Pig:
1115.0
nTPM
Mouse:
4745.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA029458
Pigment epithelial cells
Not detected
Immunohistochemical staining of retina shows strong cytoplasmic positivity in photoreceptor cells.
50 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
621.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 621.9
Samples: 105
Max nTPM: 1117.5
Min nTPM: 255.5
Std nTPM: 162.5
Median nTPM:
352_1
62 years, male
1117.5
172_1
72 years, female
998.3
237_1
82 years, male
952.9
375_1
74 years, female
938.5
386_1
76 years, male
927.0
355_1
70 years, female
915.6
347_1
72 years, male
896.1
389_1
86 years, female
882.0
6_1
73 years, female
865.5
218_1
71 years, female
859.0
447_1
81 years, male
852.5
316_1
62 years, male
837.3
246_1
77 years, male
800.7
229_1
69 years, female
791.8
379_1
60 years, male
783.4
354_1
81 years, female
769.0
425_1
59 years, female
767.6
189_1
76 years, male
765.3
321_1
62 years, female
760.8
350_1
84 years, female
755.1
286_1
68 years, female
737.9
526_1
61 years, male
735.5
163_1
78 years, male
731.4
324_1
76 years, male
729.8
243_1
75 years, male
728.9
217_1
76 years, male
723.9
292_1
71 years, male
720.9
319_1
81 years, male
716.9
335_1
73 years, female
712.8
35_1
74 years, female
710.3
405_1
91 years, male
706.2
126_1
63 years, male
705.1
251_1
78 years, male
702.2
9_1
66 years, female
700.9
480_1
63 years, male
692.3
177_1
74 years, male
687.9
115_1
83 years, male
678.0
468_1
89 years, male
668.6
394_1
75 years, female
668.2
99_1
64 years, male
656.8
404_1
82 years, female
656.3
153_1
70 years, female
655.3
265_1
87 years, male
647.6
490_1
67 years, female
634.4
81_1
67 years, male
633.2
466_1
57 years, female
633.0
376_1
75 years, female
631.6
348_1
84 years, male
630.6
322_1
76 years, male
629.2
503_1
68 years, male
624.3
415_1
77 years, female
622.1
349_1
83 years, male
622.0
318_1
68 years, male
621.1
291_1
76 years, male
620.2
307_1
66 years, female
616.9
43_1
64 years, female
616.7
117_1
61 years, male
614.4
356_1
87 years, female
614.0
377_1
82 years, female
610.7
406_1
79 years, male
607.4
32_1
67 years, male
606.4
384_1
83 years, male
595.1
396_1
62 years, male
593.3
320_1
89 years, female
583.8
518_1
75 years, female
580.9
517_1
88 years, male
578.8
353_1
82 years, female
574.9
162_1
79 years, female
553.1
266_1
85 years, male
552.5
293_1
68 years, female
550.6
499_1
55 years, female
547.8
414_1
84 years, female
547.2
137_1
83 years, male
543.7
173_1
67 years, male
543.0
145_1
84 years, male
542.1
142_1
61 years, female
539.6
18_1
88 years, male
533.3
311_1
78 years, male
517.4
2_1
77 years, female
513.9
254_1
77 years, female
511.3
42_1
85 years, male
507.4
313_1
79 years, female
491.6
264_1
73 years, female
489.9
317_1
60 years, male
487.0
120_1
70 years, female
472.9
315_1
62 years, female
462.7
495_1
57 years, female
459.8
17_1
71 years, male
451.1
351_1
91 years, male
448.3
139_1
64 years, female
442.3
491_1
89 years, female
423.7
288_1
66 years, female
422.6
413_1
59 years, female
419.9
149_1
88 years, male
417.8
119_1
70 years, female
415.3
506_1
65 years, male
406.2
89_1
63 years, male
381.0
41_1
94 years, female
362.9
109_1
81 years, female
358.3
314_1
67 years, male
349.1
308_1
70 years, female
348.2
452_1
88 years, female
346.5
295_1
61 years, female
341.4
4_1
88 years, female
340.3
501_1
88 years, male
255.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.