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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
231
Samples
Sample
Description
TPM
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.1
957
Tumor
1.0
277
Tumor
1.0
661
Tumor
0.9
743
Tumor
0.9
497
Tumor
0.9
975
Tumor
0.9
921
Tumor
0.8
463
Tumor
0.8
411
Tumor
0.8
881
Tumor
0.8
695
Tumor
0.8
331
Tumor
0.7
357
Tumor
0.7
425
Tumor
0.7
313
Tumor
0.7
951
Tumor
0.7
817
Tumor
0.6
737
Tumor
0.6
815
Tumor
0.6
431
Tumor
0.6
533
Tumor
0.6
271
Tumor
0.6
455
Tumor
0.6
221
Tumor
0.6
1021
Tumor
0.6
877
Tumor
0.6
227
Tumor
0.5
1031
Tumor
0.5
571
Tumor
0.5
923
Tumor
0.5
671
Tumor
0.5
983
Tumor
0.5
635
Tumor
0.5
727
Tumor
0.5
977
Tumor
0.5
814
Normal
0.5
641
Tumor
0.5
663
Tumor
0.5
112
Tumor
0.5
355
Tumor
0.5
385
Tumor
0.4
865
Tumor
0.4
967
Tumor
0.4
567
Tumor
0.4
387
Tumor
0.4
445
Tumor
0.4
883
Tumor
0.4
413
Tumor
0.4
443
Tumor
0.4
297
Tumor
0.4
813
Tumor
0.4
647
Tumor
0.4
685
Tumor
0.4
211
Tumor
0.4
943
Tumor
0.4
427
Tumor
0.4
285
Tumor
0.3
351
Tumor
0.3
435
Tumor
0.3
517
Tumor
0.3
358
Normal
0.3
363
Tumor
0.3
483
Tumor
0.3
573
Tumor
0.3
527
Tumor
0.3
361
Tumor
0.3
953
Tumor
0.3
185
Tumor
0.3
535
Tumor
0.3
343
Tumor
0.3
125
Tumor
0.3
465
Tumor
0.3
724
Normal
0.3
1043
Tumor
0.3
553
Tumor
0.3
433
Tumor
0.3
147
Tumor
0.3
493
Tumor
0.2
545
Tumor
0.2
563
Tumor
0.2
342
Normal
0.2
523
Tumor
0.2
217
Tumor
0.2
423
Tumor
0.2
421
Tumor
0.2
341
Tumor
0.2
965
Tumor
0.2
213
Tumor
0.2
467
Tumor
0.2
444
Normal
0.2
873
Tumor
0.2
963
Tumor
0.2
937
Tumor
0.2
863
Tumor
0.2
344
Normal
0.2
447
Tumor
0.2
388
Normal
0.2
741
Tumor
0.2
267
Tumor
0.1
537
Tumor
0.1
487
Tumor
0.1
367
Tumor
0.1
461
Tumor
0.1
394
Normal
0.1
354
Normal
0.1
192
Normal
0.1
283
Tumor
0.1
268
Normal
0.1
861
Tumor
0.1
1045
Tumor
0.1
135
Tumor
0.1
386
Normal
0.1
434
Normal
0.1
392
Normal
0.1
258
Normal
0.1
471
Tumor
0.1
925
Tumor
0.1
365
Tumor
0.1
491
Tumor
0.1
396
Normal
0.1
515
Tumor
0.1
715
Tumor
0.1
391
Tumor
0.1
1015
Tumor
0.1
272
Normal
0.1
141
Tumor
0.1
777
Tumor
0.0
823
Tumor
0.0
617
Tumor
0.0
171
Tumor
0.0
1013
Tumor
0.0
187
Tumor
0.0
113
Tumor
0.0
393
Tumor
0.0
353
Tumor
0.0
672
Normal
0.0
231
Tumor
0.0
232
Normal
0.0
161
Tumor
0.0
311
Tumor
0.0
395
Tumor
0.0
462
Normal
0.0
785
Tumor
0.0
384
Normal
0.0
222
Normal
0.0
142
Normal
0.0
257
Tumor
0.0
481
Tumor
0.0
851
Tumor
0.0
415
Tumor
0.0
262
Normal
0.0
665
Tumor
0.0
352
Normal
0.0
146
Normal
0.0
1027
Tumor
0.0
867
Tumor
0.0
196
Normal
0.0
534
Normal
0.0
557
Tumor
0.0
432
Normal
0.0
917
Tumor
-0.1
664
Normal
-0.1
224
Normal
-0.1
498
Normal
-0.1
492
Normal
-0.1
366
Normal
-0.1
218
Normal
-0.1
383
Tumor
-0.1
332
Normal
-0.1
913
Tumor
-0.1
666
Normal
-0.1
662
Normal
-0.1
864
Normal
-0.1
195
Tumor
-0.1
436
Normal
-0.1
713
Tumor
-0.1
868
Normal
-0.1
312
Normal
-0.1
214
Normal
-0.1
525
Tumor
-0.1
482
Normal
-0.1
191
Tumor
-0.1
186
Normal
-0.1
314
Normal
-0.1
755
Tumor
-0.1
376
Normal
-0.1
513
Tumor
-0.1
188
Normal
-0.1
451
Tumor
-0.1
744
Normal
-0.1
284
Normal
-0.1
127
Tumor
-0.1
721
Tumor
-0.1
866
Normal
-0.2
478
Normal
-0.2
494
Normal
-0.2
628
Normal
-0.2
488
Normal
-0.2
472
Normal
-0.2
648
Normal
-0.2
954
Normal
-0.2
362
Normal
-0.2
368
Normal
-0.2
862
Normal
-0.2
546
Normal
-0.2
574
Normal
-0.2
162
Normal
-0.2
364
Normal
-0.2
446
Normal
-0.2
966
Normal
-0.2
738
Normal
-0.2
857
Tumor
-0.2
858
Normal
-0.2
261
Tumor
-0.2
328
Normal
-0.2
412
Normal
-0.2
172
Normal
-0.2
874
Normal
-0.2
223
Tumor
-0.2
414
Normal
-0.2
375
Tumor
-0.2
452
Normal
-0.2
484
Normal
-0.2
554
Normal
-0.2
145
Tumor
-0.2
528
Normal
-0.2
778
Normal
-0.2
114
Normal
-0.2
212
Normal
-0.2
952
Normal
-0.2
416
Normal
-0.2
538
Normal
-0.2
126
Normal
-0.2
742
Normal
-0.2
228
Normal
-0.2
878
Normal
-0.2
618
Normal
-0.2
426
Normal
-0.2
615
Tumor
-0.2
298
Normal
-0.3
852
Normal
-0.3
636
Normal
-0.3
124
Normal
-0.3
278
Normal
-0.3
915
Tumor
-0.3
745
Tumor
-0.3
697
Tumor
-0.3
448
Normal
-0.3
955
Tumor
-0.3
976
Normal
-0.3
148
Normal
-0.3
327
Tumor
-0.3
464
Normal
-0.3
728
Normal
-0.3
356
Normal
-0.3
572
Normal
-0.3
138
Normal
-0.3
137
Tumor
-0.3
466
Normal
-0.3
558
Normal
-0.3
111
Normal
-0.3
128
Normal
-0.3
642
Normal
-0.3
911
Tumor
-0.3
456
Normal
-0.3
516
Normal
-0.3
882
Normal
-0.3
428
Normal
-0.3
526
Normal
-0.3
524
Normal
-0.3
1016
Normal
-0.3
422
Normal
-0.3
1028
Normal
-0.3
938
Normal
-0.3
1042
Normal
-0.3
1026
Normal
-0.3
884
Normal
-0.3
686
Normal
-0.3
536
Normal
-0.3
824
Normal
-0.3
627
Tumor
-0.3
564
Normal
-0.3
424
Normal
-0.3
786
Normal
-0.3
286
Normal
-0.3
696
Normal
-0.3
518
Normal
-0.3
477
Tumor
-0.3
944
Normal
-0.3
698
Normal
-0.4
714
Normal
-0.4
1025
Tumor
-0.4
922
Normal
-0.4
818
Normal
-0.4
136
Normal
-0.4
918
Normal
-0.4
956
Normal
-0.4
468
Normal
-0.4
816
Normal
-0.4
968
Normal
-0.4
132
Normal
-0.4
982
Normal
-0.4
924
Normal
-0.4
916
Normal
-0.4
746
Normal
-0.4
716
Normal
-0.4
981
Tumor
-0.4
514
Normal
-0.4
756
Normal
-0.4
1014
Normal
-0.4
914
Normal
-0.4
616
Normal
-0.4
568
Normal
-0.5
1041
Tumor
-0.5
723
Tumor
-0.5
964
Normal
-0.5
926
Normal
-0.5
1032
Normal
-0.5
1022
Normal
-0.5
984
Normal
-0.5
722
Normal
-0.5
123
Tumor
-0.5
474
Normal
-0.5
978
Normal
-0.5
958
Normal
-0.5
912
Normal
-0.7
1044
Normal
-0.7
1046
Normal
-0.7
473
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.