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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CUTA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
248.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1032.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
895.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
747.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
726.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
716.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
656.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
641.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
600.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
577.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
530.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
521.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
519.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
510.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
510.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
509.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
505.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
505.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
480.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
479.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
475.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
471.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
469.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
469.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
459.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
453.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
452.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
434.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
432.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
431.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
420.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
415.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
414.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
412.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
411.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
407.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
402.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
402.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
401.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
400.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
400.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
398.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
397.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
396.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
390.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
387.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
387.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
383.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
381.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
379.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
377.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
376.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
376.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
368.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
368.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
366.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
358.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
353.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
352.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
347.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
340.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
339.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
339.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
339.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
337.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
336.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
334.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
330.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
329.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
329.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
327.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
327.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
324.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
323.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
321.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
319.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
319.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
318.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
316.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
315.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
315.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
314.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
314.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
312.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
312.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
310.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
308.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
307.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
304.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
302.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
301.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
299.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
297.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
294.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
293.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
292.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
290.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
290.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
289.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
289.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
288.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
288.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
287.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
286.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
286.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
286.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
285.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
284.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
283.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
281.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
280.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
277.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
276.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
275.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
275.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
274.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
270.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
270.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
269.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
269.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
266.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
265.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
265.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
264.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
262.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
261.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
259.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
259.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
258.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
257.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
256.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
254.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
253.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
252.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
252.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
251.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
251.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
251.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
251.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
249.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
248.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
246.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
245.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
245.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
243.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
242.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
241.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
241.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
241.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
240.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
240.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
239.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
239.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
239.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
237.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
236.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
235.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
234.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
233.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
233.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
232.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
231.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
231.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
229.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
229.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
229.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
229.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
228.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
228.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
228.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
227.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
226.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
226.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
225.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
223.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
222.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
222.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
221.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
220.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
219.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
217.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
217.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
216.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
216.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
216.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
215.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
214.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
214.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
214.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
212.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
212.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
211.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
211.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
211.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
211.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
211.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
210.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
210.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
209.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
209.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
207.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
207.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
206.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
206.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
206.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
206.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
205.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
204.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
202.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
202.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
201.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
201.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
200.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
198.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
198.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
198.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
197.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
197.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
197.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
196.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
196.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
195.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
195.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
194.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
194.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
194.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
194.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
193.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
193.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
193.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
192.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
192.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
191.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
191.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
190.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
190.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
189.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
189.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
188.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
188.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
188.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
187.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
186.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
184.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
183.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
181.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
180.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
179.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
179.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
178.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
176.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
175.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
175.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
174.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
173.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
173.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
172.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
171.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
171.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
170.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
170.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
170.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
169.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
168.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
168.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
168.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
168.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
167.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
167.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
166.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
166.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
166.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
164.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
164.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
163.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
163.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
162.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
161.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
161.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
160.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
160.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
160.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
159.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
159.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
158.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
158.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
156.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
154.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
154.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
153.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
152.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
151.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
151.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
151.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
150.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
149.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
149.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
149.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
148.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
147.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
146.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
146.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
144.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
143.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
142.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
141.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
141.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
141.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
141.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
139.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
139.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
137.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
136.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
136.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
135.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
135.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
135.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
134.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
133.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
133.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
131.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
129.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
129.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
127.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
126.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
125.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
125.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
125.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
124.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
123.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
123.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
122.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
120.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
120.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
120.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
120.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
120.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
119.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
118.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
117.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
117.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
116.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
110.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
106.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
106.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
103.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
101.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
99.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
98.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
97.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
95.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
95.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
94.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
94.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
92.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
88.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
86.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
86.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
86.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
82.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
82.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CUTA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
170.5
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
877.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
721.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
512.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
507.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
500.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
482.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
464.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
449.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
446.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
436.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
405.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
400.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
399.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
395.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
367.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
364.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
356.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
354.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
341.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
323.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
314.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
290.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
289.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
286.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
256.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
252.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
248.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
247.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
246.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
243.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
238.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
238.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
237.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
230.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
229.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
227.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
227.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
227.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
225.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
224.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
218.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
218.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
217.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
213.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
213.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
210.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
207.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
206.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
206.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
206.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
205.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
204.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
200.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
199.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
196.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
195.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
193.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
193.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
192.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
191.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
191.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
191.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
188.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
187.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
185.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
184.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
184.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
179.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
179.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
178.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
177.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
177.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
176.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
175.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
173.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
173.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
172.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
172.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
171.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
171.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
170.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
170.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
169.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
166.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
165.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
164.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
163.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
163.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
161.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
161.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
160.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
160.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
159.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
159.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
159.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
159.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
158.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
158.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
157.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
155.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
154.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
153.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
153.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
152.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
151.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
151.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
151.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
150.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
149.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
148.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
147.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
147.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
146.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
146.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
145.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
145.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
144.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
143.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
143.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
141.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
140.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
140.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
138.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
137.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
137.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
136.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
136.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
136.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
136.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
135.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
134.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
134.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
133.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
133.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
133.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
131.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
130.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
130.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
127.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
126.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
124.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
123.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
123.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
123.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
122.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
122.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
121.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
121.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
121.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
120.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
120.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
120.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
120.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
118.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
118.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
118.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
118.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
117.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
117.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
116.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
116.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
115.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
114.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
114.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
114.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
113.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
113.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
112.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
112.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
112.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
111.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
111.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
110.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
107.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
107.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
104.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
102.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
101.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
101.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
99.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
99.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
98.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
98.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
96.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
96.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
96.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
95.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
95.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
95.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
94.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
94.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
93.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
91.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
90.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
88.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
88.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
87.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
86.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
86.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
85.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
84.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
84.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
81.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
81.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
80.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
78.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
78.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
78.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
78.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
76.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
76.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
76.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
76.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
73.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
68.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
68.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
67.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
65.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
64.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
60.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
57.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
44.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
0.9
1027
Tumor
0.8
465
Tumor
0.7
123
Tumor
0.6
425
Tumor
0.6
127
Tumor
0.6
695
Tumor
0.5
663
Tumor
0.5
125
Tumor
0.5
411
Tumor
0.5
112
Tumor
0.5
977
Tumor
0.5
1041
Tumor
0.5
231
Tumor
0.5
1013
Tumor
0.4
147
Tumor
0.4
128
Normal
0.4
277
Tumor
0.3
571
Tumor
0.3
635
Tumor
0.3
313
Tumor
0.3
171
Tumor
0.3
393
Tumor
0.2
431
Tumor
0.2
124
Normal
0.2
698
Normal
0.2
435
Tumor
0.2
271
Tumor
0.2
114
Normal
0.2
957
Tumor
0.2
953
Tumor
0.2
111
Normal
0.2
257
Tumor
0.2
863
Tumor
0.2
925
Tumor
0.2
342
Normal
0.2
1046
Normal
0.2
433
Tumor
0.2
867
Tumor
0.1
351
Tumor
0.1
261
Tumor
0.1
685
Tumor
0.1
357
Tumor
0.1
355
Tumor
0.1
1021
Tumor
0.1
222
Normal
0.1
738
Normal
0.1
161
Tumor
0.1
267
Tumor
0.1
172
Normal
0.1
298
Normal
0.1
196
Normal
0.1
858
Normal
0.1
517
Tumor
0.1
126
Normal
0.1
387
Tumor
0.1
1043
Tumor
0.1
615
Tumor
0.1
162
Normal
0.1
1045
Tumor
0.1
745
Tumor
0.1
185
Tumor
0.1
361
Tumor
0.1
777
Tumor
0.0
186
Normal
0.0
477
Tumor
0.0
137
Tumor
0.0
553
Tumor
0.0
375
Tumor
0.0
746
Normal
0.0
923
Tumor
0.0
388
Normal
0.0
436
Normal
0.0
394
Normal
0.0
786
Normal
0.0
493
Tumor
0.0
785
Tumor
0.0
743
Tumor
0.0
744
Normal
0.0
546
Normal
0.0
742
Normal
0.0
343
Tumor
0.0
353
Tumor
0.0
432
Normal
0.0
723
Tumor
0.0
756
Normal
0.0
627
Tumor
0.0
1022
Normal
0.0
1044
Normal
0.0
823
Tumor
0.0
391
Tumor
0.0
1026
Normal
0.0
358
Normal
0.0
341
Tumor
0.0
883
Tumor
0.0
445
Tumor
0.0
912
Normal
0.0
466
Normal
0.0
392
Normal
0.0
647
Tumor
0.0
954
Normal
0.0
824
Normal
-0.1
557
Tumor
-0.1
617
Tumor
-0.1
423
Tumor
-0.1
344
Normal
-0.1
421
Tumor
-0.1
148
Normal
-0.1
278
Normal
-0.1
364
Normal
-0.1
376
Normal
-0.1
911
Tumor
-0.1
488
Normal
-0.1
214
Normal
-0.1
944
Normal
-0.1
443
Tumor
-0.1
481
Tumor
-0.1
913
Tumor
-0.1
141
Tumor
-0.1
857
Tumor
-0.1
113
Tumor
-0.1
232
Normal
-0.1
356
Normal
-0.1
272
Normal
-0.1
1025
Tumor
-0.1
146
Normal
-0.1
386
Normal
-0.1
218
Normal
-0.1
714
Normal
-0.1
221
Tumor
-0.1
722
Normal
-0.1
926
Normal
-0.1
737
Tumor
-0.1
131
Tumor
-0.1
314
Normal
-0.1
258
Normal
-0.1
938
Normal
-0.1
484
Normal
-0.1
513
Tumor
-0.1
664
Normal
-0.1
868
Normal
-0.1
132
Normal
-0.1
515
Tumor
-0.1
352
Normal
-0.1
354
Normal
-0.1
498
Normal
-0.1
716
Normal
-0.1
955
Tumor
-0.1
958
Normal
-0.1
976
Normal
-0.1
862
Normal
-0.1
662
Normal
-0.1
332
Normal
-0.1
648
Normal
-0.1
818
Normal
-0.1
1042
Normal
-0.1
286
Normal
-0.1
563
Tumor
-0.1
534
Normal
-0.1
966
Normal
-0.1
448
Normal
-0.2
527
Tumor
-0.2
952
Normal
-0.2
416
Normal
-0.2
981
Tumor
-0.2
328
Normal
-0.2
964
Normal
-0.2
914
Normal
-0.2
922
Normal
-0.2
873
Tumor
-0.2
878
Normal
-0.2
728
Normal
-0.2
724
Normal
-0.2
365
Tumor
-0.2
383
Tumor
-0.2
138
Normal
-0.2
462
Normal
-0.2
452
Normal
-0.2
396
Normal
-0.2
494
Normal
-0.2
456
Normal
-0.2
852
Normal
-0.2
918
Normal
-0.2
864
Normal
-0.2
136
Normal
-0.2
228
Normal
-0.2
483
Tumor
-0.2
192
Normal
-0.2
451
Tumor
-0.2
778
Normal
-0.2
434
Normal
-0.2
951
Tumor
-0.2
415
Tumor
-0.2
213
Tumor
-0.2
414
Normal
-0.2
1015
Tumor
-0.2
188
Normal
-0.2
697
Tumor
-0.2
963
Tumor
-0.2
262
Normal
-0.2
1032
Normal
-0.2
366
Normal
-0.2
455
Tumor
-0.2
312
Normal
-0.2
861
Tumor
-0.2
924
Normal
-0.2
363
Tumor
-0.2
672
Normal
-0.2
618
Normal
-0.2
482
Normal
-0.2
727
Tumor
-0.2
464
Normal
-0.2
882
Normal
-0.2
187
Tumor
-0.2
227
Tumor
-0.2
866
Normal
-0.2
412
Normal
-0.2
1016
Normal
-0.2
536
Normal
-0.2
877
Tumor
-0.2
538
Normal
-0.3
686
Normal
-0.3
446
Normal
-0.3
268
Normal
-0.3
865
Tumor
-0.3
956
Normal
-0.3
497
Tumor
-0.3
537
Tumor
-0.3
426
Normal
-0.3
224
Normal
-0.3
327
Tumor
-0.3
467
Tumor
-0.3
968
Normal
-0.3
666
Normal
-0.3
696
Normal
-0.3
212
Normal
-0.3
715
Tumor
-0.3
472
Normal
-0.3
665
Tumor
-0.3
217
Tumor
-0.3
982
Normal
-0.3
468
Normal
-0.3
814
Normal
-0.3
755
Tumor
-0.3
428
Normal
-0.3
424
Normal
-0.3
545
Tumor
-0.3
422
Normal
-0.3
816
Normal
-0.3
223
Tumor
-0.3
915
Tumor
-0.3
1028
Normal
-0.3
1014
Normal
-0.3
191
Tumor
-0.3
874
Normal
-0.3
721
Tumor
-0.3
478
Normal
-0.3
297
Tumor
-0.3
384
Normal
-0.3
813
Tumor
-0.3
368
Normal
-0.3
983
Tumor
-0.3
284
Normal
-0.3
642
Normal
-0.3
554
Normal
-0.3
385
Tumor
-0.3
362
Normal
-0.3
463
Tumor
-0.3
616
Normal
-0.3
367
Tumor
-0.3
528
Normal
-0.4
285
Tumor
-0.4
516
Normal
-0.4
984
Normal
-0.4
636
Normal
-0.4
564
Normal
-0.4
195
Tumor
-0.4
574
Normal
-0.4
444
Normal
-0.4
142
Normal
-0.4
937
Tumor
-0.4
474
Normal
-0.4
628
Normal
-0.4
523
Tumor
-0.4
881
Tumor
-0.4
135
Tumor
-0.4
311
Tumor
-0.4
573
Tumor
-0.4
447
Tumor
-0.4
572
Normal
-0.4
884
Normal
-0.4
558
Normal
-0.4
965
Tumor
-0.4
921
Tumor
-0.4
978
Normal
-0.4
487
Tumor
-0.4
916
Normal
-0.4
331
Tumor
-0.4
514
Normal
-0.4
641
Tumor
-0.5
491
Tumor
-0.5
427
Tumor
-0.5
567
Tumor
-0.5
967
Tumor
-0.5
145
Tumor
-0.5
492
Normal
-0.5
461
Tumor
-0.5
568
Normal
-0.5
671
Tumor
-0.5
917
Tumor
-0.5
526
Normal
-0.5
815
Tumor
-0.5
533
Tumor
-0.5
525
Tumor
-0.5
395
Tumor
-0.5
518
Normal
-0.6
943
Tumor
-0.6
413
Tumor
-0.6
851
Tumor
-0.6
473
Tumor
-0.6
661
Tumor
-0.6
471
Tumor
-0.6
524
Normal
-0.7
283
Tumor
-0.7
1031
Tumor
-0.7
535
Tumor
-0.7
975
Tumor
-0.8
817
Tumor
-0.8
211
Tumor
-0.9
713
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.