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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
81.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
79.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
76.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
73.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
72.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
70.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
70.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
63.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
54.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
50.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
45.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.4
192
Normal
1.3
957
Tumor
1.1
553
Tumor
0.9
221
Tumor
0.9
191
Tumor
0.8
196
Normal
0.8
213
Tumor
0.7
425
Tumor
0.7
217
Tumor
0.7
443
Tumor
0.7
222
Normal
0.6
218
Normal
0.6
387
Tumor
0.6
214
Normal
0.6
431
Tumor
0.6
231
Tumor
0.6
497
Tumor
0.6
743
Tumor
0.6
195
Tumor
0.5
396
Normal
0.5
665
Tumor
0.5
385
Tumor
0.5
146
Normal
0.5
493
Tumor
0.5
467
Tumor
0.5
386
Normal
0.4
138
Normal
0.4
433
Tumor
0.4
421
Tumor
0.4
1041
Tumor
0.4
123
Tumor
0.4
391
Tumor
0.4
268
Normal
0.4
388
Normal
0.4
355
Tumor
0.4
533
Tumor
0.4
672
Normal
0.4
261
Tumor
0.4
558
Normal
0.4
977
Tumor
0.4
915
Tumor
0.4
367
Tumor
0.3
394
Normal
0.3
351
Tumor
0.3
444
Normal
0.3
463
Tumor
0.3
124
Normal
0.3
635
Tumor
0.3
685
Tumor
0.3
877
Tumor
0.3
1025
Tumor
0.3
366
Normal
0.3
127
Tumor
0.3
257
Tumor
0.3
465
Tumor
0.3
137
Tumor
0.3
538
Normal
0.3
698
Normal
0.3
1042
Normal
0.3
517
Tumor
0.3
917
Tumor
0.3
951
Tumor
0.3
272
Normal
0.3
937
Tumor
0.2
395
Tumor
0.2
135
Tumor
0.2
357
Tumor
0.2
671
Tumor
0.2
132
Normal
0.2
368
Normal
0.2
392
Normal
0.2
462
Normal
0.2
662
Normal
0.2
554
Normal
0.2
572
Normal
0.2
721
Tumor
0.2
724
Normal
0.2
823
Tumor
0.2
271
Tumor
0.2
112
Tumor
0.2
141
Tumor
0.2
455
Tumor
0.2
925
Tumor
0.2
434
Normal
0.2
447
Tumor
0.2
258
Normal
0.2
126
Normal
0.2
415
Tumor
0.2
944
Normal
0.2
921
Tumor
0.2
963
Tumor
0.2
456
Normal
0.2
918
Normal
0.2
663
Tumor
0.2
1044
Normal
0.2
111
Normal
0.2
136
Normal
0.2
664
Normal
0.2
863
Tumor
0.2
741
Tumor
0.1
142
Normal
0.1
1032
Normal
0.1
695
Tumor
0.1
232
Normal
0.1
1022
Normal
0.1
574
Normal
0.1
874
Normal
0.1
376
Normal
0.1
223
Tumor
0.1
975
Tumor
0.1
817
Tumor
0.1
362
Normal
0.1
365
Tumor
0.1
212
Normal
0.1
147
Tumor
0.1
468
Normal
0.1
224
Normal
0.1
211
Tumor
0.1
492
Normal
0.1
466
Normal
0.1
342
Normal
0.1
428
Normal
0.1
568
Normal
0.1
926
Normal
0.1
361
Tumor
0.1
513
Tumor
0.1
1031
Tumor
0.1
131
Tumor
0.1
954
Normal
0.1
171
Tumor
0.1
344
Normal
0.1
262
Normal
0.1
464
Normal
0.1
865
Tumor
0.1
545
Tumor
0.1
1028
Normal
0.1
384
Normal
0.1
557
Tumor
0.0
188
Normal
0.0
814
Normal
0.0
1027
Tumor
0.0
864
Normal
0.0
666
Normal
0.0
125
Tumor
0.0
352
Normal
0.0
524
Normal
0.0
914
Normal
0.0
383
Tumor
0.0
867
Tumor
0.0
571
Tumor
0.0
483
Tumor
0.0
375
Tumor
0.0
922
Normal
0.0
445
Tumor
0.0
916
Normal
0.0
777
Tumor
0.0
883
Tumor
0.0
516
Normal
0.0
715
Tumor
0.0
924
Normal
0.0
564
Normal
0.0
446
Normal
0.0
426
Normal
0.0
328
Normal
0.0
461
Tumor
0.0
498
Normal
0.0
648
Normal
0.0
866
Normal
0.0
956
Normal
0.0
267
Tumor
0.0
661
Tumor
0.0
491
Tumor
0.0
423
Tumor
-0.1
868
Normal
-0.1
452
Normal
-0.1
145
Tumor
-0.1
414
Normal
-0.1
851
Tumor
-0.1
422
Normal
-0.1
1045
Tumor
-0.1
523
Tumor
-0.1
923
Tumor
-0.1
114
Normal
-0.1
128
Normal
-0.1
938
Normal
-0.1
955
Tumor
-0.1
413
Tumor
-0.1
628
Normal
-0.1
424
Normal
-0.1
563
Tumor
-0.1
341
Tumor
-0.1
186
Normal
-0.1
358
Normal
-0.1
642
Normal
-0.1
514
Normal
-0.1
952
Normal
-0.1
526
Normal
-0.1
162
Normal
-0.1
982
Normal
-0.1
416
Normal
-0.1
283
Tumor
-0.1
861
Tumor
-0.1
615
Tumor
-0.1
284
Normal
-0.1
686
Normal
-0.1
858
Normal
-0.1
161
Tumor
-0.1
412
Normal
-0.1
1016
Normal
-0.1
393
Tumor
-0.1
884
Normal
-0.1
647
Tumor
-0.1
913
Tumor
-0.1
965
Tumor
-0.1
912
Normal
-0.1
411
Tumor
-0.1
728
Normal
-0.1
744
Normal
-0.1
786
Normal
-0.1
185
Tumor
-0.1
818
Normal
-0.1
966
Normal
-0.1
1026
Normal
-0.2
716
Normal
-0.2
148
Normal
-0.2
1043
Tumor
-0.2
756
Normal
-0.2
364
Normal
-0.2
518
Normal
-0.2
881
Tumor
-0.2
525
Tumor
-0.2
534
Normal
-0.2
976
Normal
-0.2
1014
Normal
-0.2
436
Normal
-0.2
852
Normal
-0.2
878
Normal
-0.2
862
Normal
-0.2
815
Tumor
-0.2
816
Normal
-0.2
616
Normal
-0.2
488
Normal
-0.2
636
Normal
-0.2
451
Tumor
-0.2
228
Normal
-0.2
363
Tumor
-0.2
778
Normal
-0.2
618
Normal
-0.2
487
Tumor
-0.2
537
Tumor
-0.2
727
Tumor
-0.2
967
Tumor
-0.2
515
Tumor
-0.2
187
Tumor
-0.2
873
Tumor
-0.2
722
Normal
-0.2
567
Tumor
-0.2
528
Normal
-0.2
356
Normal
-0.2
1013
Tumor
-0.2
427
Tumor
-0.2
882
Normal
-0.2
813
Tumor
-0.3
737
Tumor
-0.3
785
Tumor
-0.3
354
Normal
-0.3
968
Normal
-0.3
978
Normal
-0.3
943
Tumor
-0.3
546
Normal
-0.3
285
Tumor
-0.3
432
Normal
-0.3
172
Normal
-0.3
641
Tumor
-0.3
1046
Normal
-0.3
113
Tumor
-0.3
627
Tumor
-0.3
824
Normal
-0.3
964
Normal
-0.3
1021
Tumor
-0.3
714
Normal
-0.3
617
Tumor
-0.3
958
Normal
-0.3
984
Normal
-0.3
983
Tumor
-0.3
953
Tumor
-0.4
573
Tumor
-0.4
742
Normal
-0.4
484
Normal
-0.4
857
Tumor
-0.4
327
Tumor
-0.4
746
Normal
-0.4
527
Tumor
-0.4
536
Normal
-0.4
745
Tumor
-0.4
1015
Tumor
-0.4
286
Normal
-0.4
494
Normal
-0.4
353
Tumor
-0.4
981
Tumor
-0.4
696
Normal
-0.4
474
Normal
-0.5
911
Tumor
-0.5
435
Tumor
-0.5
477
Tumor
-0.5
227
Tumor
-0.5
738
Normal
-0.5
448
Normal
-0.5
482
Normal
-0.5
478
Normal
-0.6
472
Normal
-0.6
713
Tumor
-0.6
471
Tumor
-0.7
755
Tumor
-0.7
535
Tumor
-0.7
697
Tumor
-0.7
723
Tumor
-0.8
481
Tumor
-0.9
473
Tumor
-1.9
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.