We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC93A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
242.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
138.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
114.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
102.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
69.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
62.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
54.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
51.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
41.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UNC93A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
52.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
3.3
357
Tumor
3.1
227
Tumor
2.4
981
Tumor
2.2
515
Tumor
2.2
483
Tumor
2.2
363
Tumor
2.0
665
Tumor
2.0
743
Tumor
1.8
713
Tumor
1.8
365
Tumor
1.7
666
Normal
1.7
428
Normal
1.6
513
Tumor
1.6
785
Tumor
1.5
884
Normal
1.5
727
Tumor
1.5
393
Tumor
1.4
328
Normal
1.4
877
Tumor
1.4
464
Normal
1.4
618
Normal
1.3
967
Tumor
1.3
414
Normal
1.2
862
Normal
1.2
978
Normal
1.1
756
Normal
1.1
331
Tumor
1.0
517
Tumor
1.0
883
Tumor
0.9
616
Normal
0.9
465
Tumor
0.9
786
Normal
0.8
924
Normal
0.8
912
Normal
0.8
358
Normal
0.8
642
Normal
0.8
196
Normal
0.8
362
Normal
0.8
664
Normal
0.8
641
Tumor
0.7
466
Normal
0.7
516
Normal
0.7
975
Tumor
0.7
868
Normal
0.7
982
Normal
0.7
716
Normal
0.7
461
Tumor
0.7
874
Normal
0.6
484
Normal
0.6
272
Normal
0.6
411
Tumor
0.6
864
Normal
0.6
192
Normal
0.5
396
Normal
0.5
514
Normal
0.5
742
Normal
0.5
922
Normal
0.5
571
Tumor
0.5
746
Normal
0.5
162
Normal
0.5
364
Normal
0.4
723
Tumor
0.4
368
Normal
0.4
462
Normal
0.4
866
Normal
0.4
186
Normal
0.4
672
Normal
0.4
918
Normal
0.4
755
Tumor
0.4
518
Normal
0.4
314
Normal
0.4
482
Normal
0.4
567
Tumor
0.4
964
Normal
0.3
662
Normal
0.3
361
Tumor
0.3
424
Normal
0.3
228
Normal
0.3
648
Normal
0.3
426
Normal
0.3
297
Tumor
0.3
195
Tumor
0.3
526
Normal
0.3
271
Tumor
0.3
218
Normal
0.2
352
Normal
0.2
976
Normal
0.2
481
Tumor
0.2
958
Normal
0.2
312
Normal
0.2
217
Tumor
0.2
327
Tumor
0.2
214
Normal
0.2
926
Normal
0.2
412
Normal
0.2
356
Normal
0.2
671
Tumor
0.2
572
Normal
0.1
354
Normal
0.1
965
Tumor
0.1
685
Tumor
0.1
463
Tumor
0.0
968
Normal
0.0
882
Normal
0.0
413
Tumor
0.0
258
Normal
0.0
984
Normal
0.0
332
Normal
0.0
695
Tumor
0.0
416
Normal
0.0
916
Normal
0.0
222
Normal
-0.1
298
Normal
-0.1
745
Tumor
-0.1
344
Normal
-0.1
722
Normal
-0.1
714
Normal
-0.1
915
Tumor
-0.1
132
Normal
-0.1
148
Normal
-0.1
262
Normal
-0.1
963
Tumor
-0.1
452
Normal
-0.2
277
Tumor
-0.2
285
Tumor
-0.2
1014
Normal
-0.2
456
Normal
-0.2
493
Tumor
-0.2
873
Tumor
-0.2
313
Tumor
-0.2
384
Normal
-0.2
878
Normal
-0.2
341
Tumor
-0.2
921
Tumor
-0.2
355
Tumor
-0.2
863
Tumor
-0.3
738
Normal
-0.3
911
Tumor
-0.3
376
Normal
-0.3
185
Tumor
-0.3
1016
Normal
-0.3
286
Normal
-0.4
696
Normal
-0.4
468
Normal
-0.4
498
Normal
-0.4
284
Normal
-0.4
391
Tumor
-0.4
221
Tumor
-0.4
146
Normal
-0.4
568
Normal
-0.4
366
Normal
-0.5
138
Normal
-0.5
392
Normal
-0.5
278
Normal
-0.5
147
Tumor
-0.5
564
Normal
-0.5
914
Normal
-0.5
1013
Tumor
-0.5
224
Normal
-0.5
478
Normal
-0.5
415
Tumor
-0.5
778
Normal
-0.5
558
Normal
-0.5
686
Normal
-0.5
142
Normal
-0.5
394
Normal
-0.5
232
Normal
-0.6
617
Tumor
-0.6
923
Tumor
-0.6
387
Tumor
-0.6
137
Tumor
-0.6
881
Tumor
-0.6
268
Normal
-0.6
171
Tumor
-0.6
213
Tumor
-0.6
777
Tumor
-0.6
351
Tumor
-0.6
187
Tumor
-0.6
342
Normal
-0.6
375
Tumor
-0.6
422
Normal
-0.6
172
Normal
-0.7
861
Tumor
-0.7
388
Normal
-0.7
917
Tumor
-0.7
557
Tumor
-0.7
494
Normal
-0.7
267
Tumor
-0.7
1015
Tumor
-0.7
966
Normal
-0.7
191
Tumor
-0.8
957
Tumor
-0.8
188
Normal
-0.8
477
Tumor
-0.8
524
Normal
-0.8
145
Tumor
-0.8
925
Tumor
-0.8
311
Tumor
-0.8
728
Normal
-0.8
141
Tumor
-0.8
367
Tumor
-0.8
525
Tumor
-0.8
451
Tumor
-0.8
473
Tumor
-0.9
353
Tumor
-0.9
867
Tumor
-0.9
627
Tumor
-0.9
628
Normal
-0.9
865
Tumor
-0.9
563
Tumor
-0.9
343
Tumor
-0.9
977
Tumor
-0.9
136
Normal
-1.0
472
Normal
-1.0
715
Tumor
-1.0
615
Tumor
-1.0
721
Tumor
-1.0
491
Tumor
-1.0
574
Normal
-1.0
636
Normal
-1.0
161
Tumor
-1.0
257
Tumor
-1.0
488
Normal
-1.0
814
Normal
-1.0
647
Tumor
-1.1
913
Tumor
-1.1
427
Tumor
-1.1
474
Normal
-1.1
395
Tumor
-1.1
983
Tumor
-1.1
455
Tumor
-1.1
635
Tumor
-1.2
212
Normal
-1.2
523
Tumor
-1.3
741
Tumor
-1.3
386
Normal
-1.3
421
Tumor
-1.3
261
Tumor
-1.3
423
Tumor
-1.4
663
Tumor
-1.4
471
Tumor
-1.4
425
Tumor
-1.4
497
Tumor
-1.5
492
Normal
-1.5
211
Tumor
-1.5
467
Tumor
-1.5
283
Tumor
-1.6
385
Tumor
-1.6
737
Tumor
-1.6
813
Tumor
-1.7
135
Tumor
-1.7
223
Tumor
-1.7
231
Tumor
-1.8
573
Tumor
-1.8
724
Normal
-2.0
661
Tumor
-2.1
383
Tumor
-2.1
487
Tumor
-3.2
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
