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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HBS1L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
63.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HBS1L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
663
Tumor
0.8
777
Tumor
0.7
123
Tumor
0.7
353
Tumor
0.7
953
Tumor
0.7
915
Tumor
0.7
923
Tumor
0.6
745
Tumor
0.6
1013
Tumor
0.6
567
Tumor
0.5
473
Tumor
0.5
863
Tumor
0.5
537
Tumor
0.5
487
Tumor
0.5
571
Tumor
0.5
411
Tumor
0.5
647
Tumor
0.5
785
Tumor
0.5
327
Tumor
0.4
937
Tumor
0.4
523
Tumor
0.4
137
Tumor
0.4
1021
Tumor
0.4
313
Tumor
0.4
367
Tumor
0.4
361
Tumor
0.4
955
Tumor
0.4
355
Tumor
0.4
713
Tumor
0.3
515
Tumor
0.3
865
Tumor
0.3
755
Tumor
0.3
497
Tumor
0.3
965
Tumor
0.3
983
Tumor
0.3
981
Tumor
0.3
261
Tumor
0.3
697
Tumor
0.3
922
Normal
0.3
943
Tumor
0.3
546
Normal
0.3
926
Normal
0.3
861
Tumor
0.3
554
Normal
0.3
723
Tumor
0.3
864
Normal
0.3
357
Tumor
0.3
277
Tumor
0.3
1026
Normal
0.3
431
Tumor
0.2
756
Normal
0.2
862
Normal
0.2
518
Normal
0.2
746
Normal
0.2
436
Normal
0.2
944
Normal
0.2
211
Tumor
0.2
958
Normal
0.2
483
Tumor
0.2
132
Normal
0.2
341
Tumor
0.2
1043
Tumor
0.2
951
Tumor
0.2
112
Tumor
0.2
921
Tumor
0.2
851
Tumor
0.2
445
Tumor
0.2
1032
Normal
0.2
141
Tumor
0.2
527
Tumor
0.2
365
Tumor
0.2
964
Normal
0.2
1022
Normal
0.2
298
Normal
0.2
627
Tumor
0.2
956
Normal
0.2
824
Normal
0.2
412
Normal
0.2
698
Normal
0.2
465
Tumor
0.2
724
Normal
0.2
534
Normal
0.2
147
Tumor
0.2
867
Tumor
0.2
628
Normal
0.2
966
Normal
0.2
448
Normal
0.2
648
Normal
0.2
695
Tumor
0.2
222
Normal
0.1
267
Tumor
0.1
742
Normal
0.1
786
Normal
0.1
227
Tumor
0.1
221
Tumor
0.1
696
Normal
0.1
924
Normal
0.1
332
Normal
0.1
925
Tumor
0.1
858
Normal
0.1
111
Normal
0.1
113
Tumor
0.1
466
Normal
0.1
743
Tumor
0.1
1015
Tumor
0.1
741
Tumor
0.1
1014
Normal
0.1
342
Normal
0.1
228
Normal
0.1
737
Tumor
0.1
816
Normal
0.1
957
Tumor
0.1
271
Tumor
0.1
125
Tumor
0.1
425
Tumor
0.1
952
Normal
0.1
728
Normal
0.1
635
Tumor
0.1
818
Normal
0.1
572
Normal
0.1
278
Normal
0.1
231
Tumor
0.1
484
Normal
0.1
878
Normal
0.1
727
Tumor
0.1
738
Normal
0.1
533
Tumor
0.1
968
Normal
0.1
873
Tumor
0.1
187
Tumor
0.1
916
Normal
0.1
852
Normal
0.1
883
Tumor
0.1
722
Normal
0.1
258
Normal
0.1
223
Tumor
0.1
618
Normal
0.1
868
Normal
0.1
214
Normal
0.1
617
Tumor
0.1
388
Normal
0.1
362
Normal
0.1
642
Normal
0.1
451
Tumor
0.1
128
Normal
0.1
616
Normal
0.1
462
Normal
0.1
938
Normal
0.1
528
Normal
0.1
514
Normal
0.1
376
Normal
0.1
114
Normal
0.1
866
Normal
0.1
464
Normal
0.1
1046
Normal
0.1
918
Normal
0.1
284
Normal
0.1
874
Normal
0.1
474
Normal
0.1
1044
Normal
0.1
1045
Tumor
0.1
568
Normal
0.1
286
Normal
0.1
494
Normal
0.1
564
Normal
0.1
463
Tumor
0.1
366
Normal
0.1
488
Normal
0.1
396
Normal
0.1
414
Normal
0.1
1016
Normal
0.1
356
Normal
0.1
1042
Normal
0.1
435
Tumor
0.1
358
Normal
0.1
314
Normal
0.1
142
Normal
0.1
456
Normal
0.1
666
Normal
0.1
526
Normal
0.1
196
Normal
0.0
954
Normal
0.0
328
Normal
0.0
664
Normal
0.0
963
Tumor
0.0
452
Normal
0.0
665
Tumor
0.0
472
Normal
0.0
636
Normal
0.0
232
Normal
0.0
491
Tumor
0.0
912
Normal
0.0
913
Tumor
0.0
716
Normal
0.0
882
Normal
0.0
662
Normal
0.0
138
Normal
0.0
148
Normal
0.0
392
Normal
0.0
364
Normal
0.0
387
Tumor
0.0
574
Normal
0.0
558
Normal
0.0
1028
Normal
0.0
516
Normal
0.0
394
Normal
0.0
714
Normal
0.0
368
Normal
0.0
984
Normal
0.0
778
Normal
0.0
331
Tumor
0.0
911
Tumor
0.0
447
Tumor
0.0
978
Normal
0.0
383
Tumor
0.0
426
Normal
0.0
135
Tumor
0.0
468
Normal
0.0
446
Normal
0.0
461
Tumor
0.0
563
Tumor
0.0
354
Normal
0.0
218
Normal
0.0
415
Tumor
0.0
525
Tumor
0.0
145
Tumor
0.0
982
Normal
0.0
914
Normal
0.0
386
Normal
0.0
884
Normal
0.0
428
Normal
0.0
482
Normal
0.0
131
Tumor
0.0
815
Tumor
0.0
262
Normal
0.0
422
Normal
0.0
136
Normal
0.0
721
Tumor
-0.1
126
Normal
-0.1
477
Tumor
-0.1
312
Normal
-0.1
416
Normal
-0.1
432
Normal
-0.1
352
Normal
-0.1
976
Normal
-0.1
424
Normal
-0.1
212
Normal
-0.1
686
Normal
-0.1
881
Tumor
-0.1
384
Normal
-0.1
124
Normal
-0.1
672
Normal
-0.1
615
Tumor
-0.1
395
Tumor
-0.1
162
Normal
-0.1
285
Tumor
-0.1
977
Tumor
-0.1
823
Tumor
-0.1
186
Normal
-0.1
455
Tumor
-0.1
434
Normal
-0.1
363
Tumor
-0.1
171
Tumor
-0.1
744
Normal
-0.1
492
Normal
-0.1
268
Normal
-0.1
661
Tumor
-0.1
443
Tumor
-0.1
192
Normal
-0.1
344
Normal
-0.2
172
Normal
-0.2
272
Normal
-0.2
573
Tumor
-0.2
817
Tumor
-0.2
444
Normal
-0.2
217
Tumor
-0.2
146
Normal
-0.2
283
Tumor
-0.2
224
Normal
-0.2
375
Tumor
-0.2
127
Tumor
-0.2
351
Tumor
-0.2
311
Tumor
-0.2
433
Tumor
-0.2
343
Tumor
-0.2
481
Tumor
-0.2
536
Normal
-0.2
191
Tumor
-0.2
538
Normal
-0.2
188
Normal
-0.2
641
Tumor
-0.2
967
Tumor
-0.2
524
Normal
-0.2
498
Normal
-0.2
413
Tumor
-0.3
161
Tumor
-0.3
1031
Tumor
-0.3
471
Tumor
-0.3
513
Tumor
-0.3
535
Tumor
-0.3
185
Tumor
-0.3
478
Normal
-0.3
553
Tumor
-0.3
393
Tumor
-0.3
1027
Tumor
-0.3
813
Tumor
-0.3
975
Tumor
-0.3
391
Tumor
-0.4
297
Tumor
-0.4
493
Tumor
-0.4
195
Tumor
-0.4
427
Tumor
-0.4
857
Tumor
-0.4
814
Normal
-0.4
545
Tumor
-0.5
1025
Tumor
-0.5
423
Tumor
-0.5
517
Tumor
-0.5
421
Tumor
-0.5
917
Tumor
-0.5
467
Tumor
-0.5
257
Tumor
-0.5
1041
Tumor
-0.6
385
Tumor
-0.6
877
Tumor
-0.6
213
Tumor
-0.6
671
Tumor
-0.6
557
Tumor
-0.6
715
Tumor
-0.8
685
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
