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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACOT13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
53.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
51.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACOT13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
67.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
63.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
55.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
46.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.3
513
Tumor
1.1
1041
Tumor
1.0
698
Normal
0.9
742
Normal
0.8
1046
Normal
0.8
448
Normal
0.8
452
Normal
0.8
695
Tumor
0.8
186
Normal
0.7
342
Normal
0.7
925
Tumor
0.7
615
Tumor
0.7
922
Normal
0.7
1014
Normal
0.7
332
Normal
0.7
484
Normal
0.7
231
Tumor
0.6
756
Normal
0.6
882
Normal
0.6
862
Normal
0.6
388
Normal
0.6
982
Normal
0.6
482
Normal
0.6
1032
Normal
0.6
465
Tumor
0.6
1016
Normal
0.6
1026
Normal
0.6
436
Normal
0.6
488
Normal
0.6
648
Normal
0.6
618
Normal
0.6
912
Normal
0.6
358
Normal
0.6
1045
Tumor
0.6
924
Normal
0.6
426
Normal
0.6
298
Normal
0.6
1022
Normal
0.6
636
Normal
0.6
128
Normal
0.6
354
Normal
0.6
964
Normal
0.6
744
Normal
0.6
738
Normal
0.6
786
Normal
0.5
534
Normal
0.5
546
Normal
0.5
864
Normal
0.5
314
Normal
0.5
394
Normal
0.5
132
Normal
0.5
356
Normal
0.5
472
Normal
0.5
376
Normal
0.5
462
Normal
0.5
746
Normal
0.5
196
Normal
0.5
616
Normal
0.5
568
Normal
0.5
414
Normal
0.5
915
Tumor
0.5
911
Tumor
0.5
352
Normal
0.5
976
Normal
0.5
866
Normal
0.5
938
Normal
0.5
232
Normal
0.5
422
Normal
0.5
1044
Normal
0.5
528
Normal
0.5
926
Normal
0.5
428
Normal
0.4
642
Normal
0.4
424
Normal
0.4
878
Normal
0.4
162
Normal
0.4
526
Normal
0.4
858
Normal
0.4
432
Normal
0.4
222
Normal
0.4
148
Normal
0.4
468
Normal
0.4
944
Normal
0.4
412
Normal
0.4
664
Normal
0.4
572
Normal
0.4
868
Normal
0.4
142
Normal
0.4
722
Normal
0.4
564
Normal
0.4
984
Normal
0.4
111
Normal
0.3
958
Normal
0.3
514
Normal
0.3
466
Normal
0.3
666
Normal
0.3
966
Normal
0.3
328
Normal
0.3
227
Tumor
0.3
818
Normal
0.3
364
Normal
0.3
261
Tumor
0.3
1042
Normal
0.3
123
Tumor
0.3
954
Normal
0.3
723
Tumor
0.3
686
Normal
0.3
714
Normal
0.3
446
Normal
0.3
286
Normal
0.3
741
Tumor
0.3
214
Normal
0.3
728
Normal
0.3
914
Normal
0.3
344
Normal
0.3
662
Normal
0.3
554
Normal
0.3
824
Normal
0.3
114
Normal
0.3
716
Normal
0.3
1015
Tumor
0.3
353
Tumor
0.3
1027
Tumor
0.3
365
Tumor
0.3
464
Normal
0.3
884
Normal
0.3
146
Normal
0.2
262
Normal
0.2
396
Normal
0.2
392
Normal
0.2
518
Normal
0.2
665
Tumor
0.2
228
Normal
0.2
258
Normal
0.2
137
Tumor
0.2
368
Normal
0.2
918
Normal
0.2
538
Normal
0.2
785
Tumor
0.2
366
Normal
0.2
628
Normal
0.2
362
Normal
0.2
874
Normal
0.2
956
Normal
0.2
968
Normal
0.2
558
Normal
0.2
571
Tumor
0.2
124
Normal
0.2
272
Normal
0.2
456
Normal
0.2
278
Normal
0.2
136
Normal
0.2
416
Normal
0.2
218
Normal
0.2
443
Tumor
0.2
952
Normal
0.2
474
Normal
0.2
672
Normal
0.1
284
Normal
0.1
138
Normal
0.1
867
Tumor
0.1
696
Normal
0.1
916
Normal
0.1
778
Normal
0.1
861
Tumor
0.1
553
Tumor
0.1
563
Tumor
0.1
363
Tumor
0.1
1028
Normal
0.1
494
Normal
0.1
852
Normal
0.0
423
Tumor
0.0
477
Tumor
0.0
516
Normal
0.0
172
Normal
0.0
361
Tumor
0.0
937
Tumor
0.0
384
Normal
0.0
212
Normal
0.0
574
Normal
0.0
127
Tumor
0.0
415
Tumor
0.0
955
Tumor
0.0
312
Normal
0.0
978
Normal
0.0
487
Tumor
0.0
478
Normal
0.0
515
Tumor
0.0
863
Tumor
0.0
224
Normal
0.0
715
Tumor
-0.1
113
Tumor
-0.1
755
Tumor
-0.1
1043
Tumor
-0.1
434
Normal
-0.1
126
Normal
-0.1
816
Normal
-0.1
745
Tumor
-0.1
171
Tumor
-0.1
913
Tumor
-0.1
524
Normal
-0.1
386
Normal
-0.1
641
Tumor
-0.1
635
Tumor
-0.2
981
Tumor
-0.2
451
Tumor
-0.2
481
Tumor
-0.2
498
Normal
-0.2
188
Normal
-0.2
492
Normal
-0.2
268
Normal
-0.2
112
Tumor
-0.2
433
Tumor
-0.2
923
Tumor
-0.3
387
Tumor
-0.3
857
Tumor
-0.3
267
Tumor
-0.3
141
Tumor
-0.3
393
Tumor
-0.3
721
Tumor
-0.3
557
Tumor
-0.3
327
Tumor
-0.3
617
Tumor
-0.3
1025
Tumor
-0.4
1013
Tumor
-0.4
483
Tumor
-0.4
192
Normal
-0.4
921
Tumor
-0.4
977
Tumor
-0.4
161
Tumor
-0.4
873
Tumor
-0.4
221
Tumor
-0.4
217
Tumor
-0.4
195
Tumor
-0.4
525
Tumor
-0.4
823
Tumor
-0.5
444
Normal
-0.5
877
Tumor
-0.5
517
Tumor
-0.5
685
Tumor
-0.5
713
Tumor
-0.5
341
Tumor
-0.5
777
Tumor
-0.5
536
Normal
-0.5
145
Tumor
-0.5
445
Tumor
-0.5
355
Tumor
-0.5
185
Tumor
-0.5
435
Tumor
-0.5
391
Tumor
-0.6
367
Tumor
-0.6
537
Tumor
-0.6
431
Tumor
-0.6
223
Tumor
-0.6
1031
Tumor
-0.6
383
Tumor
-0.6
421
Tumor
-0.6
865
Tumor
-0.6
411
Tumor
-0.6
461
Tumor
-0.6
467
Tumor
-0.6
385
Tumor
-0.7
963
Tumor
-0.7
271
Tumor
-0.7
951
Tumor
-0.7
191
Tumor
-0.7
965
Tumor
-0.8
447
Tumor
-0.8
953
Tumor
-0.8
491
Tumor
-0.8
413
Tumor
-0.8
257
Tumor
-0.8
425
Tumor
-0.8
313
Tumor
-0.8
743
Tumor
-0.8
883
Tumor
-0.8
533
Tumor
-0.8
455
Tumor
-0.8
724
Normal
-0.8
967
Tumor
-0.8
131
Tumor
-0.8
213
Tumor
-0.9
881
Tumor
-0.9
943
Tumor
-0.9
697
Tumor
-0.9
814
Normal
-0.9
493
Tumor
-0.9
527
Tumor
-0.9
463
Tumor
-0.9
187
Tumor
-0.9
471
Tumor
-0.9
473
Tumor
-0.9
351
Tumor
-1.0
983
Tumor
-1.0
817
Tumor
-1.0
813
Tumor
-1.0
497
Tumor
-1.0
851
Tumor
-1.0
147
Tumor
-1.0
135
Tumor
-1.0
671
Tumor
-1.0
523
Tumor
-1.0
125
Tumor
-1.0
1021
Tumor
-1.0
427
Tumor
-1.0
297
Tumor
-1.1
975
Tumor
-1.1
737
Tumor
-1.1
647
Tumor
-1.1
357
Tumor
-1.1
957
Tumor
-1.1
343
Tumor
-1.1
395
Tumor
-1.1
815
Tumor
-1.2
375
Tumor
-1.2
567
Tumor
-1.2
917
Tumor
-1.2
573
Tumor
-1.2
545
Tumor
-1.2
285
Tumor
-1.3
311
Tumor
-1.4
727
Tumor
-1.4
663
Tumor
-1.4
277
Tumor
-1.5
535
Tumor
-1.5
331
Tumor
-1.5
283
Tumor
-1.6
211
Tumor
-1.6
661
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
