MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.2 nTPM
HPA Brain:44.4 nTPM
GTEx:25.2 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:36.5 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
1827 Male, age 72, unknown 49.2
2219 Male, age 76, both hemispheres 47.3
2019 Male, age 18, unknown 41.3
2666 Male, age 74, left hemisphere 40.3
2828 Female, age 72, unknown 40.3
2411 Female, age 72, unknown 40.2
1870 Female, age 42, unknown 38.1
1830 Male, age 51, unknown 35.5
2586 Male, age 75, left hemisphere 32.6
1833 Male, age 53, unknown 31.7
Dorsal raphe nucleus
nTPM: 25.7
2750 Male, age 76, both hemispheres 35.9
2298 Female, age 72, unknown 24.9
1828 Male, age 53, unknown 23.6
2047 Male, age 72, unknown 23.2
2016 Female, age 72, unknown 20.9
Inferior colliculus
nTPM: 31.6
1848 Female, age 42, unknown 34.9
2849 Male, age 72, unknown 32.9
2097 Female, age 72, unknown 32.4
1890 Male, age 53, unknown 26.3
Median raphe nucleus
nTPM: 38.0
2220 Male, age 76, midline 38.0
Periaquaductal grey, anterior
nTPM: 39.6
1795 Male, age 51, unknown 41.4
1947 Male, age 18, unknown 40.4
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 30.8
1831 Male, age 72, unknown 35.9
2464 Female, age 72, unknown 31.2
1840 Male, age 53, unknown 30.7
2850 Male, age 76, both hemispheres 25.3
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 34.8
2053 Male, age 18, unknown 34.2
2140 Male, age 76, both hemispheres 21.6
Pretectal area
nTPM: 44.4
1816 Male, age 51, unknown 71.5
1944 Female, age 72, unknown 59.0
1815 Male, age 53, unknown 53.7
2007 Male, age 72, unknown 52.9
1817 Female, age 42, unknown 52.7
2407 Male, age 75, both hemispheres 41.9
2667 Female, age 75, unknown 34.4
2825 Male, age 18, unknown 33.7
2273 Male, age 74, both hemispheres 31.8
2224 Female, age 72, unknown 31.5
2316 Male, age 76, right hemisphere 25.6
Red nucleus
nTPM: 34.0
2584 Male, age 75, left hemisphere 42.3
2588 Male, age 74, left hemisphere 41.2
2503 Female, age 72, unknown 40.8
2785 Male, age 18, unknown 38.2
2725 Female, age 75, unknown 36.5
1865 Male, age 51, unknown 35.6
1821 Female, age 72, unknown 32.2
1904 Male, age 53, unknown 29.6
1954 Female, age 42, unknown 29.0
2227 Male, age 72, unknown 28.2
2823 Male, age 76, right hemisphere 27.6
2769 Male, age 72, unknown 26.3
Substantia nigra
nTPM: 37.9
1941 Male, age 53, unknown 51.2
1889 Female, age 72, unknown 47.1
2583 Male, age 75, right hemisphere 43.8
1916 Female, age 42, unknown 36.9
2590 Female, age 75, unknown 36.4
1851 Male, age 51, unknown 36.2
2241 Male, age 72, unknown 35.3
2409 Female, age 72, unknown 32.9
2665 Male, age 74, both hemispheres 31.9
2699 Male, age 18, unknown 27.6
Superior colliculus
nTPM: 42.9
2668 Female, age 75, unknown 52.5
1796 Male, age 53, unknown 52.3
2261 Male, age 18, unknown 50.4
1913 Female, age 42, unknown 48.0
2087 Female, age 72, unknown 47.9
2587 Male, age 74, left hemisphere 41.3
1995 Male, age 72, unknown 38.1
1895 Male, age 76, right hemisphere 36.4
2664 Male, age 75, both hemispheres 32.1
1839 Male, age 51, unknown 30.4
Ventral tegmental area
nTPM: 39.2
2223 Female, age 72, unknown 65.8
2410 Female, age 72, unknown 39.2
2218 Male, age 76, both hemispheres 36.4
1942 Male, age 51, unknown 31.6
1915 Female, age 42, unknown 31.1
2021 Male, age 53, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.2
Samples: 139

Max nTPM: 93.6
Min nTPM: 6.3
Std nTPM: 11.2
Median nTPM: 23.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 47.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 47.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 46.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 41.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 29.6
Sample A Female 42.2
Sample B Female 29.6
Sample C Male 46.4
Sample D Male 50.3
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 72.8
Min nTPM: 43.9
Sample A Female 72.8
Sample B Female 43.9
Sample C Male 45.7
Sample D Male 50.3
Periaqueductal gray
nTPM: 34.6
Samples: 3

Max nTPM: 35.5
Min nTPM: 33.5
Sample B Female 35.5
Sample C Male 34.7
Sample D Male 33.5
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 20.3
Sample A Female 50.9
Sample B Female 20.3
Sample C Male 51.7
Sample D Male 48.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 34.7
Sample A Male 36.4
Sample B Male 34.7
Sample C Female 38.8
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
69059954 Antisense, RP_050317_04_G02, Mouse strain C57BL/6J (56 days, male) 8.1

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