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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTP4A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
119.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
601.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
479.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
384.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
372.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
360.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
358.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
343.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
313.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
303.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
303.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
296.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
293.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
292.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
281.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
277.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
276.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
270.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
263.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
262.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
255.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
254.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
248.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
247.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
246.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
242.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
242.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
240.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
235.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
235.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
234.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
229.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
227.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
227.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
223.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
222.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
219.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
216.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
214.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
213.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
213.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
208.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
207.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
206.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
206.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
202.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
194.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
193.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
190.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
186.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
184.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
184.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
182.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
181.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
181.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
180.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
179.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
179.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
178.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
178.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
177.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
174.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
171.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
170.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
169.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
168.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
168.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
168.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
168.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
167.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
167.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
167.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
166.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
165.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
165.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
161.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
161.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
160.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
159.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
159.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
158.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
158.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
158.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
158.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
155.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
155.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
153.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
153.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
151.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
151.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
150.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
149.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
149.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
148.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
148.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
148.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
147.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
147.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
146.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
146.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
144.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
144.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
144.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
144.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
143.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
142.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
142.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
141.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
140.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
140.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
139.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
138.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
137.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
137.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
137.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
136.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
134.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
134.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
134.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
134.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
134.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
134.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
133.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
133.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
132.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
132.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
131.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
131.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
130.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
130.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
129.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
129.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
128.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
128.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
128.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
128.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
127.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
126.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
126.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
126.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
126.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
125.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
124.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
124.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
123.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
123.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
123.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
122.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
120.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
120.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
119.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
119.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
119.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
118.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
118.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
118.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
118.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
117.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
117.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
116.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
114.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
113.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
113.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
113.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
113.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
112.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
111.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
111.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
110.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
110.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
110.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
110.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
109.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
107.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
106.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
106.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
105.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
104.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
103.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
103.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
103.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
102.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
101.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
101.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
101.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
101.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
101.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
99.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
99.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
99.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
99.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
98.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
98.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
97.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
97.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
97.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
97.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
96.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
96.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
95.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
95.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
94.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
94.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
94.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
93.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
93.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
92.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
92.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
92.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
91.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
91.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
91.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
91.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
90.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
87.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
86.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
86.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
86.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
85.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
85.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
85.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
85.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
84.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
83.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
82.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
82.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
81.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
81.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
80.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
79.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
79.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
79.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
79.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
79.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
78.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
78.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
78.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
77.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
76.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
75.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
75.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
75.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
74.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
74.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
73.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
73.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
72.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
71.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
71.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
71.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
69.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
68.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
68.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
68.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
67.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
67.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
67.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
66.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
66.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
66.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
62.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
61.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
61.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
60.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
60.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
60.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
59.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
59.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
57.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
56.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
56.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
52.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
52.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
51.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
49.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
47.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
29.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTP4A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
173.1
Number of samples
231
Samples
Sample
Description
TPM
DO50798
0 years, male, NA, stage:3, dead, 30 days
808.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
716.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
665.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
590.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
550.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
515.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
478.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
447.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
431.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
425.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
417.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
415.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
390.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
353.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
344.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
337.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
334.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
329.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
323.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
306.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
302.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
296.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
294.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
280.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
275.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
270.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
269.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
269.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
268.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
268.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
266.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
265.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
264.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
262.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
261.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
259.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
258.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
255.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
249.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
249.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
247.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
245.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
243.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
243.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
233.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
233.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
230.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
228.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
227.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
226.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
224.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
221.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
219.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
218.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
216.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
210.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
210.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
208.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
206.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
206.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
206.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
205.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
205.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
202.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
202.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
196.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
196.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
195.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
194.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
192.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
192.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
192.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
191.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
190.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
189.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
188.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
188.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
188.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
187.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
184.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
184.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
181.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
181.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
180.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
180.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
179.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
178.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
177.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
176.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
175.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
174.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
174.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
169.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
168.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
163.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
162.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
161.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
160.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
159.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
157.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
157.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
157.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
155.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
155.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
154.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
154.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
154.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
152.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
151.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
150.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
149.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
148.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
147.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
147.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
146.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
143.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
143.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
141.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
141.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
140.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
140.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
140.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
139.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
138.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
137.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
136.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
135.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
134.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
134.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
134.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
133.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
132.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
131.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
131.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
131.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
131.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
129.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
129.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
128.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
127.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
125.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
125.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
125.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
125.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
124.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
121.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
121.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
121.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
121.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
120.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
120.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
120.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
119.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
119.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
118.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
118.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
116.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
114.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
114.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
112.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
110.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
110.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
109.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
109.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
107.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
105.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
104.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
103.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
103.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
102.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
102.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
101.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
101.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
100.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
100.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
100.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
99.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
99.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
96.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
96.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
93.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
93.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
93.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
90.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
90.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
90.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
88.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
87.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
86.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
86.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
83.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
83.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
82.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
81.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
81.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
80.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
80.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
77.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
77.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
77.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
76.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
75.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
74.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
72.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
72.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
69.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
68.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
65.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
65.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
62.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
61.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
61.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
58.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
51.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
467
Tumor
0.9
271
Tumor
0.8
525
Tumor
0.8
557
Tumor
0.7
435
Tumor
0.7
267
Tumor
0.6
1025
Tumor
0.6
413
Tumor
0.6
231
Tumor
0.6
727
Tumor
0.6
967
Tumor
0.6
171
Tumor
0.6
285
Tumor
0.6
571
Tumor
0.5
533
Tumor
0.5
1043
Tumor
0.5
363
Tumor
0.5
433
Tumor
0.5
685
Tumor
0.5
553
Tumor
0.5
463
Tumor
0.4
517
Tumor
0.4
923
Tumor
0.4
423
Tumor
0.4
277
Tumor
0.4
944
Normal
0.4
817
Tumor
0.4
425
Tumor
0.4
445
Tumor
0.4
975
Tumor
0.4
671
Tumor
0.4
617
Tumor
0.4
954
Normal
0.4
925
Tumor
0.4
713
Tumor
0.4
113
Tumor
0.4
135
Tumor
0.4
395
Tumor
0.4
465
Tumor
0.3
258
Normal
0.3
635
Tumor
0.3
567
Tumor
0.3
745
Tumor
0.3
981
Tumor
0.3
123
Tumor
0.3
513
Tumor
0.3
641
Tumor
0.3
1021
Tumor
0.3
951
Tumor
0.3
131
Tumor
0.3
393
Tumor
0.3
221
Tumor
0.3
615
Tumor
0.3
921
Tumor
0.3
451
Tumor
0.3
357
Tumor
0.3
737
Tumor
0.3
755
Tumor
0.3
141
Tumor
0.3
642
Normal
0.3
952
Normal
0.3
568
Normal
0.3
554
Normal
0.3
815
Tumor
0.3
147
Tumor
0.3
443
Tumor
0.2
487
Tumor
0.2
922
Normal
0.2
351
Tumor
0.2
272
Normal
0.2
161
Tumor
0.2
112
Tumor
0.2
715
Tumor
0.2
361
Tumor
0.2
456
Normal
0.2
857
Tumor
0.2
1031
Tumor
0.2
414
Normal
0.2
964
Normal
0.2
468
Normal
0.2
344
Normal
0.2
376
Normal
0.2
341
Tumor
0.2
877
Tumor
0.2
426
Normal
0.2
618
Normal
0.2
926
Normal
0.2
483
Tumor
0.2
924
Normal
0.2
232
Normal
0.2
744
Normal
0.2
228
Normal
0.2
965
Tumor
0.2
446
Normal
0.1
412
Normal
0.1
331
Tumor
0.1
861
Tumor
0.1
786
Normal
0.1
963
Tumor
0.1
111
Normal
0.1
1014
Normal
0.1
564
Normal
0.1
938
Normal
0.1
785
Tumor
0.1
114
Normal
0.1
721
Tumor
0.1
866
Normal
0.1
873
Tumor
0.1
332
Normal
0.1
636
Normal
0.1
1013
Tumor
0.1
436
Normal
0.1
262
Normal
0.1
464
Normal
0.1
573
Tumor
0.1
452
Normal
0.1
1015
Tumor
0.1
286
Normal
0.1
424
Normal
0.1
462
Normal
0.1
724
Normal
0.1
428
Normal
0.1
367
Tumor
0.1
647
Tumor
0.1
268
Normal
0.1
738
Normal
0.1
698
Normal
0.1
695
Tumor
0.1
132
Normal
0.1
878
Normal
0.1
356
Normal
0.1
497
Tumor
0.1
422
Normal
0.1
572
Normal
0.1
368
Normal
0.1
746
Normal
0.1
918
Normal
0.1
214
Normal
0.1
466
Normal
0.1
874
Normal
0.1
218
Normal
0.1
128
Normal
0.1
1044
Normal
0.1
528
Normal
0.1
142
Normal
0.1
968
Normal
0.1
284
Normal
0.1
354
Normal
0.1
956
Normal
0.1
358
Normal
0.1
672
Normal
0.1
983
Tumor
0.1
648
Normal
0.1
471
Tumor
0.1
314
Normal
0.1
742
Normal
0.1
937
Tumor
0.1
616
Normal
0.1
434
Normal
0.1
662
Normal
0.0
448
Normal
0.0
313
Tumor
0.0
342
Normal
0.0
664
Normal
0.0
352
Normal
0.0
867
Tumor
0.0
384
Normal
0.0
364
Normal
0.0
958
Normal
0.0
728
Normal
0.0
858
Normal
0.0
353
Tumor
0.0
327
Tumor
0.0
444
Normal
0.0
477
Tumor
0.0
628
Normal
0.0
882
Normal
0.0
187
Tumor
0.0
574
Normal
0.0
355
Tumor
0.0
741
Tumor
0.0
851
Tumor
0.0
697
Tumor
0.0
868
Normal
0.0
212
Normal
0.0
1016
Normal
0.0
966
Normal
0.0
227
Tumor
0.0
865
Tumor
0.0
432
Normal
0.0
474
Normal
0.0
666
Normal
0.0
563
Tumor
0.0
881
Tumor
0.0
1028
Normal
0.0
914
Normal
0.0
883
Tumor
0.0
1026
Normal
0.0
484
Normal
0.0
953
Tumor
0.0
977
Tumor
0.0
982
Normal
0.0
978
Normal
0.0
663
Tumor
0.0
298
Normal
0.0
943
Tumor
0.0
534
Normal
0.0
665
Tumor
0.0
912
Normal
0.0
864
Normal
0.0
984
Normal
0.0
411
Tumor
0.0
546
Normal
0.0
124
Normal
0.0
1046
Normal
0.0
488
Normal
0.0
515
Tumor
0.0
518
Normal
0.0
492
Normal
0.0
523
Tumor
0.0
823
Tumor
0.0
396
Normal
0.0
976
Normal
-0.1
1022
Normal
-0.1
558
Normal
-0.1
696
Normal
-0.1
185
Tumor
-0.1
223
Tumor
-0.1
481
Tumor
-0.1
427
Tumor
-0.1
777
Tumor
-0.1
472
Normal
-0.1
278
Normal
-0.1
136
Normal
-0.1
538
Normal
-0.1
723
Tumor
-0.1
915
Tumor
-0.1
1045
Tumor
-0.1
362
Normal
-0.1
365
Tumor
-0.1
545
Tumor
-0.1
778
Normal
-0.1
957
Tumor
-0.1
686
Normal
-0.1
461
Tumor
-0.1
1041
Tumor
-0.1
127
Tumor
-0.1
392
Normal
-0.1
916
Normal
-0.1
385
Tumor
-0.1
913
Tumor
-0.1
416
Normal
-0.1
714
Normal
-0.1
537
Tumor
-0.1
627
Tumor
-0.1
862
Normal
-0.1
224
Normal
-0.1
387
Tumor
-0.1
222
Normal
-0.1
366
Normal
-0.1
955
Tumor
-0.1
524
Normal
-0.1
722
Normal
-0.1
824
Normal
-0.1
415
Tumor
-0.1
196
Normal
-0.1
516
Normal
-0.1
884
Normal
-0.1
375
Tumor
-0.2
312
Normal
-0.2
498
Normal
-0.2
526
Normal
-0.2
261
Tumor
-0.2
431
Tumor
-0.2
756
Normal
-0.2
716
Normal
-0.2
527
Tumor
-0.2
1032
Normal
-0.2
852
Normal
-0.2
343
Tumor
-0.2
911
Tumor
-0.2
195
Tumor
-0.2
661
Tumor
-0.2
328
Normal
-0.2
1042
Normal
-0.2
394
Normal
-0.2
1027
Tumor
-0.2
493
Tumor
-0.2
138
Normal
-0.2
494
Normal
-0.2
391
Tumor
-0.2
473
Tumor
-0.2
146
Normal
-0.2
743
Tumor
-0.2
388
Normal
-0.2
217
Tumor
-0.2
482
Normal
-0.2
816
Normal
-0.2
386
Normal
-0.3
137
Tumor
-0.3
125
Tumor
-0.3
818
Normal
-0.3
186
Normal
-0.3
297
Tumor
-0.3
535
Tumor
-0.3
863
Tumor
-0.3
491
Tumor
-0.3
145
Tumor
-0.3
148
Normal
-0.3
536
Normal
-0.3
126
Normal
-0.3
917
Tumor
-0.3
514
Normal
-0.4
383
Tumor
-0.4
447
Tumor
-0.4
213
Tumor
-0.4
172
Normal
-0.4
162
Normal
-0.4
192
Normal
-0.4
257
Tumor
-0.4
814
Normal
-0.5
421
Tumor
-0.5
813
Tumor
-0.5
478
Normal
-0.5
455
Tumor
-0.5
188
Normal
-0.5
191
Tumor
-0.6
311
Tumor
-0.6
283
Tumor
-0.7
211
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.