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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK38 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK38 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
67.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.0
1027
Tumor
0.9
957
Tumor
0.7
473
Tumor
0.6
285
Tumor
0.6
463
Tumor
0.6
977
Tumor
0.5
917
Tumor
0.5
981
Tumor
0.5
913
Tumor
0.5
493
Tumor
0.5
1013
Tumor
0.4
737
Tumor
0.4
851
Tumor
0.4
471
Tumor
0.4
536
Normal
0.4
777
Tumor
0.4
785
Tumor
0.4
147
Tumor
0.4
497
Tumor
0.4
533
Tumor
0.4
741
Tumor
0.4
724
Normal
0.4
713
Tumor
0.4
213
Tumor
0.4
953
Tumor
0.4
943
Tumor
0.4
455
Tumor
0.4
483
Tumor
0.4
513
Tumor
0.3
1021
Tumor
0.3
527
Tumor
0.3
695
Tumor
0.3
916
Normal
0.3
975
Tumor
0.3
663
Tumor
0.3
283
Tumor
0.3
671
Tumor
0.3
1041
Tumor
0.3
817
Tumor
0.3
823
Tumor
0.3
883
Tumor
0.3
865
Tumor
0.3
343
Tumor
0.3
1015
Tumor
0.3
421
Tumor
0.3
915
Tumor
0.3
395
Tumor
0.3
563
Tumor
0.3
478
Normal
0.3
857
Tumor
0.3
461
Tumor
0.3
647
Tumor
0.3
911
Tumor
0.3
257
Tumor
0.3
861
Tumor
0.3
477
Tumor
0.3
955
Tumor
0.3
715
Tumor
0.3
557
Tumor
0.3
341
Tumor
0.3
415
Tumor
0.3
211
Tumor
0.3
188
Normal
0.2
221
Tumor
0.2
355
Tumor
0.2
978
Normal
0.2
413
Tumor
0.2
697
Tumor
0.2
528
Normal
0.2
786
Normal
0.2
952
Normal
0.2
925
Tumor
0.2
433
Tumor
0.2
1031
Tumor
0.2
1028
Normal
0.2
467
Tumor
0.2
217
Tumor
0.2
924
Normal
0.2
523
Tumor
0.2
881
Tumor
0.2
937
Tumor
0.2
492
Normal
0.2
297
Tumor
0.2
966
Normal
0.2
444
Normal
0.2
524
Normal
0.2
192
Normal
0.2
365
Tumor
0.2
171
Tumor
0.2
141
Tumor
0.2
944
Normal
0.2
923
Tumor
0.2
125
Tumor
0.2
212
Normal
0.2
553
Tumor
0.2
573
Tumor
0.2
481
Tumor
0.2
867
Tumor
0.2
963
Tumor
0.2
191
Tumor
0.2
425
Tumor
0.2
515
Tumor
0.2
538
Normal
0.2
714
Normal
0.2
968
Normal
0.2
918
Normal
0.2
984
Normal
0.2
954
Normal
0.2
447
Tumor
0.1
976
Normal
0.1
271
Tumor
0.1
126
Normal
0.1
852
Normal
0.1
311
Tumor
0.1
721
Tumor
0.1
958
Normal
0.1
862
Normal
0.1
616
Normal
0.1
525
Tumor
0.1
1025
Tumor
0.1
778
Normal
0.1
816
Normal
0.1
223
Tumor
0.1
815
Tumor
0.1
546
Normal
0.1
498
Normal
0.1
328
Normal
0.1
431
Tumor
0.1
185
Tumor
0.1
1014
Normal
0.1
195
Tumor
0.1
967
Tumor
0.1
922
Normal
0.1
951
Tumor
0.1
472
Normal
0.1
474
Normal
0.1
434
Normal
0.1
427
Tumor
0.1
137
Tumor
0.1
665
Tumor
0.1
424
Normal
0.1
268
Normal
0.1
964
Normal
0.1
628
Normal
0.1
1043
Tumor
0.1
136
Normal
0.1
716
Normal
0.1
218
Normal
0.1
327
Tumor
0.1
921
Tumor
0.1
466
Normal
0.1
386
Normal
0.1
362
Normal
0.1
1042
Normal
0.1
686
Normal
0.1
491
Tumor
0.1
445
Tumor
0.1
127
Tumor
0.1
416
Normal
0.1
884
Normal
0.1
537
Tumor
0.1
558
Normal
0.1
428
Normal
0.1
648
Normal
0.1
1022
Normal
0.1
912
Normal
0.1
272
Normal
0.1
873
Tumor
0.1
356
Normal
0.1
742
Normal
0.1
277
Tumor
0.1
956
Normal
0.0
131
Tumor
0.0
364
Normal
0.0
353
Tumor
0.0
882
Normal
0.0
863
Tumor
0.0
516
Normal
0.0
187
Tumor
0.0
696
Normal
0.0
468
Normal
0.0
313
Tumor
0.0
914
Normal
0.0
938
Normal
0.0
414
Normal
0.0
554
Normal
0.0
868
Normal
0.0
344
Normal
0.0
482
Normal
0.0
465
Tumor
0.0
456
Normal
0.0
627
Tumor
0.0
514
Normal
0.0
462
Normal
0.0
662
Normal
0.0
148
Normal
0.0
745
Tumor
0.0
874
Normal
0.0
738
Normal
0.0
666
Normal
0.0
814
Normal
0.0
746
Normal
0.0
685
Tumor
0.0
145
Tumor
0.0
488
Normal
0.0
432
Normal
0.0
526
Normal
0.0
375
Tumor
0.0
448
Normal
0.0
728
Normal
0.0
262
Normal
0.0
426
Normal
0.0
866
Normal
0.0
464
Normal
0.0
312
Normal
0.0
484
Normal
0.0
446
Normal
0.0
642
Normal
0.0
518
Normal
0.0
535
Tumor
0.0
383
Tumor
0.0
138
Normal
0.0
146
Normal
0.0
412
Normal
0.0
258
Normal
0.0
214
Normal
0.0
926
Normal
0.0
224
Normal
0.0
1026
Normal
0.0
982
Normal
-0.1
284
Normal
-0.1
352
Normal
-0.1
877
Tumor
-0.1
162
Normal
-0.1
858
Normal
-0.1
232
Normal
-0.1
824
Normal
-0.1
396
Normal
-0.1
1044
Normal
-0.1
534
Normal
-0.1
744
Normal
-0.1
864
Normal
-0.1
494
Normal
-0.1
451
Tumor
-0.1
723
Tumor
-0.1
443
Tumor
-0.1
228
Normal
-0.1
755
Tumor
-0.1
422
Normal
-0.1
635
Tumor
-0.1
664
Normal
-0.1
672
Normal
-0.1
363
Tumor
-0.1
135
Tumor
-0.1
196
Normal
-0.1
222
Normal
-0.1
572
Normal
-0.1
261
Tumor
-0.1
1032
Normal
-0.1
617
Tumor
-0.1
567
Tumor
-0.1
618
Normal
-0.1
331
Tumor
-0.1
368
Normal
-0.1
278
Normal
-0.1
517
Tumor
-0.1
332
Normal
-0.1
385
Tumor
-0.1
743
Tumor
-0.1
114
Normal
-0.1
487
Tumor
-0.1
142
Normal
-0.1
756
Normal
-0.1
641
Tumor
-0.1
1016
Normal
-0.1
112
Tumor
-0.1
813
Tumor
-0.1
392
Normal
-0.1
111
Normal
-0.1
878
Normal
-0.1
722
Normal
-0.1
388
Normal
-0.1
1046
Normal
-0.1
436
Normal
-0.1
354
Normal
-0.1
452
Normal
-0.1
384
Normal
-0.1
574
Normal
-0.1
128
Normal
-0.1
698
Normal
-0.1
132
Normal
-0.1
636
Normal
-0.1
361
Tumor
-0.2
394
Normal
-0.2
113
Tumor
-0.2
298
Normal
-0.2
423
Tumor
-0.2
161
Tumor
-0.2
568
Normal
-0.2
818
Normal
-0.2
564
Normal
-0.2
1045
Tumor
-0.2
965
Tumor
-0.2
983
Tumor
-0.2
342
Normal
-0.2
376
Normal
-0.2
366
Normal
-0.2
286
Normal
-0.2
172
Normal
-0.2
124
Normal
-0.2
615
Tumor
-0.2
358
Normal
-0.2
393
Tumor
-0.2
357
Tumor
-0.2
231
Tumor
-0.3
351
Tumor
-0.3
314
Normal
-0.3
227
Tumor
-0.3
367
Tumor
-0.3
391
Tumor
-0.3
186
Normal
-0.3
411
Tumor
-0.3
661
Tumor
-0.3
267
Tumor
-0.3
123
Tumor
-0.3
727
Tumor
-0.3
387
Tumor
-0.4
435
Tumor
-0.5
571
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
