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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAN1A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
194.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
136.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
132.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
115.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
101.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
98.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
92.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
83.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
82.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
78.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
75.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
75.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
74.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
73.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
71.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
63.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
62.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
61.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
61.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
60.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
58.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
57.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
57.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
56.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
52.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
51.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
51.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
50.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
49.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
47.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
47.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
47.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
46.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
45.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
45.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
38.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAN1A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.2
Number of samples
231
Samples
Sample
Description
TPM
DO45219
0 years, male, NA, stage:2, alive, 1080 days
129.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
119.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
114.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
90.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
83.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
72.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
70.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
69.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
65.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
64.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
63.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
62.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
59.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
55.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
55.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
54.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
53.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
53.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
49.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
45.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
44.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
40.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
38.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
37.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.4
425
Tumor
1.0
745
Tumor
0.9
724
Normal
0.9
567
Tumor
0.9
937
Tumor
0.8
367
Tumor
0.8
617
Tumor
0.8
661
Tumor
0.8
391
Tumor
0.7
851
Tumor
0.7
817
Tumor
0.7
815
Tumor
0.6
983
Tumor
0.6
113
Tumor
0.6
125
Tumor
0.6
218
Normal
0.6
217
Tumor
0.6
343
Tumor
0.6
145
Tumor
0.5
526
Normal
0.5
221
Tumor
0.5
1015
Tumor
0.5
463
Tumor
0.5
353
Tumor
0.5
313
Tumor
0.5
267
Tumor
0.5
392
Normal
0.5
331
Tumor
0.5
351
Tumor
0.4
112
Tumor
0.4
223
Tumor
0.4
865
Tumor
0.4
286
Normal
0.4
696
Normal
0.4
723
Tumor
0.4
395
Tumor
0.4
228
Normal
0.4
451
Tumor
0.4
665
Tumor
0.4
277
Tumor
0.4
368
Normal
0.4
232
Normal
0.4
135
Tumor
0.4
191
Tumor
0.4
721
Tumor
0.4
467
Tumor
0.3
877
Tumor
0.3
384
Normal
0.3
443
Tumor
0.3
332
Normal
0.3
1044
Normal
0.3
187
Tumor
0.3
951
Tumor
0.3
387
Tumor
0.3
558
Normal
0.3
813
Tumor
0.3
327
Tumor
0.3
114
Normal
0.3
528
Normal
0.3
212
Normal
0.3
111
Normal
0.3
396
Normal
0.3
1021
Tumor
0.3
452
Normal
0.3
728
Normal
0.3
421
Tumor
0.3
124
Normal
0.3
636
Normal
0.3
981
Tumor
0.2
446
Normal
0.2
923
Tumor
0.2
778
Normal
0.2
968
Normal
0.2
642
Normal
0.2
722
Normal
0.2
568
Normal
0.2
514
Normal
0.2
525
Tumor
0.2
427
Tumor
0.2
861
Tumor
0.2
262
Normal
0.2
394
Normal
0.2
195
Tumor
0.2
488
Normal
0.2
967
Tumor
0.2
1046
Normal
0.2
497
Tumor
0.2
862
Normal
0.2
1027
Tumor
0.2
616
Normal
0.2
383
Tumor
0.2
142
Normal
0.2
572
Normal
0.2
686
Normal
0.1
196
Normal
0.1
912
Normal
0.1
136
Normal
0.1
873
Tumor
0.1
1026
Normal
0.1
487
Tumor
0.1
524
Normal
0.1
816
Normal
0.1
1016
Normal
0.1
414
Normal
0.1
126
Normal
0.1
574
Normal
0.1
914
Normal
0.1
431
Tumor
0.1
858
Normal
0.1
672
Normal
0.1
192
Normal
0.1
284
Normal
0.1
564
Normal
0.1
222
Normal
0.1
953
Tumor
0.1
123
Tumor
0.1
913
Tumor
0.1
713
Tumor
0.1
214
Normal
0.1
746
Normal
0.1
1022
Normal
0.1
352
Normal
0.1
132
Normal
0.1
314
Normal
0.1
523
Tumor
0.1
462
Normal
0.1
432
Normal
0.1
376
Normal
0.1
444
Normal
0.1
664
Normal
0.1
257
Tumor
0.1
662
Normal
0.1
148
Normal
0.1
868
Normal
0.1
944
Normal
0.1
466
Normal
0.1
618
Normal
0.1
138
Normal
0.1
884
Normal
0.1
426
Normal
0.1
456
Normal
0.1
818
Normal
0.1
537
Tumor
0.1
482
Normal
0.1
814
Normal
0.1
957
Tumor
0.1
666
Normal
0.1
258
Normal
0.1
188
Normal
0.1
311
Tumor
0.1
224
Normal
0.1
436
Normal
0.1
434
Normal
0.1
448
Normal
0.1
484
Normal
0.1
468
Normal
0.1
698
Normal
0.0
695
Tumor
0.0
955
Tumor
0.0
738
Normal
0.0
162
Normal
0.0
883
Tumor
0.0
494
Normal
0.0
186
Normal
0.0
648
Normal
0.0
697
Tumor
0.0
498
Normal
0.0
966
Normal
0.0
926
Normal
0.0
864
Normal
0.0
128
Normal
0.0
978
Normal
0.0
464
Normal
0.0
344
Normal
0.0
786
Normal
0.0
137
Tumor
0.0
534
Normal
0.0
422
Normal
0.0
882
Normal
0.0
984
Normal
0.0
386
Normal
0.0
866
Normal
0.0
147
Tumor
0.0
492
Normal
0.0
685
Tumor
0.0
742
Normal
0.0
527
Tumor
0.0
554
Normal
0.0
982
Normal
0.0
474
Normal
0.0
628
Normal
0.0
918
Normal
0.0
146
Normal
0.0
824
Normal
0.0
756
Normal
0.0
388
Normal
0.0
938
Normal
0.0
172
Normal
0.0
1014
Normal
0.0
358
Normal
0.0
563
Tumor
0.0
954
Normal
0.0
716
Normal
0.0
943
Tumor
0.0
924
Normal
0.0
272
Normal
0.0
365
Tumor
0.0
428
Normal
0.0
424
Normal
-0.1
557
Tumor
-0.1
964
Normal
-0.1
573
Tumor
-0.1
671
Tumor
-0.1
915
Tumor
-0.1
261
Tumor
-0.1
433
Tumor
-0.1
342
Normal
-0.1
364
Normal
-0.1
976
Normal
-0.1
922
Normal
-0.1
185
Tumor
-0.1
354
Normal
-0.1
298
Normal
-0.1
714
Normal
-0.1
445
Tumor
-0.1
356
Normal
-0.1
958
Normal
-0.1
1045
Tumor
-0.1
975
Tumor
-0.1
571
Tumor
-0.1
533
Tumor
-0.1
741
Tumor
-0.1
535
Tumor
-0.1
283
Tumor
-0.1
737
Tumor
-0.1
1028
Normal
-0.1
412
Normal
-0.1
361
Tumor
-0.1
952
Normal
-0.1
1043
Tumor
-0.1
227
Tumor
-0.1
312
Normal
-0.1
852
Normal
-0.1
878
Normal
-0.1
518
Normal
-0.1
455
Tumor
-0.1
127
Tumor
-0.1
744
Normal
-0.1
615
Tumor
-0.1
536
Normal
-0.1
213
Tumor
-0.1
375
Tumor
-0.2
472
Normal
-0.2
956
Normal
-0.2
1032
Normal
-0.2
1042
Normal
-0.2
278
Normal
-0.2
268
Normal
-0.2
415
Tumor
-0.2
328
Normal
-0.2
874
Normal
-0.2
363
Tumor
-0.2
823
Tumor
-0.2
435
Tumor
-0.2
546
Normal
-0.2
916
Normal
-0.2
755
Tumor
-0.2
1041
Tumor
-0.2
423
Tumor
-0.2
362
Normal
-0.2
881
Tumor
-0.2
911
Tumor
-0.2
366
Normal
-0.2
411
Tumor
-0.2
627
Tumor
-0.2
538
Normal
-0.2
857
Tumor
-0.2
478
Normal
-0.2
141
Tumor
-0.2
416
Normal
-0.2
231
Tumor
-0.3
1025
Tumor
-0.3
481
Tumor
-0.3
1013
Tumor
-0.3
743
Tumor
-0.3
517
Tumor
-0.3
477
Tumor
-0.3
491
Tumor
-0.3
161
Tumor
-0.3
863
Tumor
-0.3
917
Tumor
-0.3
357
Tumor
-0.3
635
Tumor
-0.3
715
Tumor
-0.4
461
Tumor
-0.4
393
Tumor
-0.4
516
Normal
-0.4
867
Tumor
-0.4
925
Tumor
-0.4
131
Tumor
-0.4
977
Tumor
-0.4
447
Tumor
-0.4
211
Tumor
-0.4
341
Tumor
-0.4
663
Tumor
-0.4
515
Tumor
-0.5
355
Tumor
-0.5
385
Tumor
-0.5
921
Tumor
-0.5
471
Tumor
-0.5
777
Tumor
-0.5
545
Tumor
-0.5
727
Tumor
-0.6
297
Tumor
-0.6
963
Tumor
-0.6
465
Tumor
-0.6
785
Tumor
-0.6
965
Tumor
-0.6
641
Tumor
-0.6
413
Tumor
-0.7
513
Tumor
-0.7
271
Tumor
-0.7
647
Tumor
-0.8
493
Tumor
-0.8
1031
Tumor
-0.8
483
Tumor
-0.8
553
Tumor
-0.9
171
Tumor
-1.0
473
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
