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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAK1IP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAK1IP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.6
1041
Tumor
1.4
951
Tumor
1.3
1021
Tumor
1.3
1027
Tumor
1.1
537
Tumor
1.0
957
Tumor
1.0
473
Tumor
1.0
743
Tumor
1.0
557
Tumor
0.9
965
Tumor
0.9
367
Tumor
0.9
573
Tumor
0.9
331
Tumor
0.9
567
Tumor
0.9
671
Tumor
0.8
355
Tumor
0.8
1025
Tumor
0.8
493
Tumor
0.8
395
Tumor
0.8
497
Tumor
0.8
877
Tumor
0.8
227
Tumor
0.8
535
Tumor
0.7
817
Tumor
0.7
517
Tumor
0.7
967
Tumor
0.7
427
Tumor
0.7
483
Tumor
0.7
977
Tumor
0.6
865
Tumor
0.6
953
Tumor
0.6
883
Tumor
0.6
525
Tumor
0.6
171
Tumor
0.6
523
Tumor
0.6
221
Tumor
0.5
267
Tumor
0.5
571
Tumor
0.5
1013
Tumor
0.5
131
Tumor
0.5
425
Tumor
0.5
925
Tumor
0.5
123
Tumor
0.5
635
Tumor
0.5
923
Tumor
0.5
353
Tumor
0.5
663
Tumor
0.5
695
Tumor
0.5
285
Tumor
0.4
983
Tumor
0.4
553
Tumor
0.4
375
Tumor
0.4
477
Tumor
0.4
351
Tumor
0.4
545
Tumor
0.4
881
Tumor
0.4
413
Tumor
0.4
385
Tumor
0.4
533
Tumor
0.4
283
Tumor
0.4
223
Tumor
0.4
217
Tumor
0.4
823
Tumor
0.4
471
Tumor
0.4
697
Tumor
0.4
213
Tumor
0.3
715
Tumor
0.3
1031
Tumor
0.3
815
Tumor
0.3
211
Tumor
0.3
343
Tumor
0.3
391
Tumor
0.3
491
Tumor
0.3
861
Tumor
0.3
1015
Tumor
0.3
411
Tumor
0.3
433
Tumor
0.3
913
Tumor
0.3
387
Tumor
0.3
187
Tumor
0.3
431
Tumor
0.3
423
Tumor
0.3
257
Tumor
0.3
313
Tumor
0.2
873
Tumor
0.2
661
Tumor
0.2
363
Tumor
0.2
527
Tumor
0.2
513
Tumor
0.2
327
Tumor
0.2
357
Tumor
0.2
467
Tumor
0.2
785
Tumor
0.2
867
Tumor
0.1
445
Tumor
0.1
443
Tumor
0.1
741
Tumor
0.1
851
Tumor
0.1
185
Tumor
0.1
447
Tumor
0.1
724
Normal
0.1
921
Tumor
0.1
112
Tumor
0.1
455
Tumor
0.1
981
Tumor
0.0
963
Tumor
0.0
777
Tumor
0.0
937
Tumor
0.0
943
Tumor
0.0
191
Tumor
0.0
737
Tumor
0.0
563
Tumor
0.0
745
Tumor
0.0
435
Tumor
0.0
127
Tumor
0.0
113
Tumor
0.0
261
Tumor
0.0
147
Tumor
0.0
911
Tumor
0.0
271
Tumor
0.0
361
Tumor
-0.1
975
Tumor
-0.1
354
Normal
-0.1
647
Tumor
-0.1
421
Tumor
-0.1
358
Normal
-0.1
863
Tumor
-0.1
297
Tumor
-0.1
665
Tumor
-0.1
917
Tumor
-0.1
1014
Normal
-0.1
515
Tumor
-0.1
135
Tumor
-0.1
195
Tumor
-0.1
393
Tumor
-0.1
813
Tumor
-0.1
915
Tumor
-0.1
222
Normal
-0.1
461
Tumor
-0.1
727
Tumor
-0.1
546
Normal
-0.1
487
Tumor
-0.1
352
Normal
-0.2
534
Normal
-0.2
277
Tumor
-0.2
162
Normal
-0.2
451
Tumor
-0.2
554
Normal
-0.2
172
Normal
-0.2
755
Tumor
-0.2
161
Tumor
-0.2
536
Normal
-0.2
713
Tumor
-0.2
1045
Tumor
-0.2
1028
Normal
-0.2
696
Normal
-0.2
564
Normal
-0.2
231
Tumor
-0.2
524
Normal
-0.2
228
Normal
-0.2
641
Tumor
-0.2
148
Normal
-0.2
721
Tumor
-0.2
615
Tumor
-0.2
341
Tumor
-0.2
617
Tumor
-0.2
342
Normal
-0.3
1026
Normal
-0.3
492
Normal
-0.3
415
Tumor
-0.3
376
Normal
-0.3
857
Tumor
-0.3
186
Normal
-0.3
912
Normal
-0.3
328
Normal
-0.3
484
Normal
-0.3
311
Tumor
-0.3
572
Normal
-0.3
488
Normal
-0.3
446
Normal
-0.3
212
Normal
-0.3
224
Normal
-0.3
145
Tumor
-0.3
125
Tumor
-0.3
964
Normal
-0.3
448
Normal
-0.3
494
Normal
-0.3
714
Normal
-0.3
966
Normal
-0.3
864
Normal
-0.3
218
Normal
-0.3
538
Normal
-0.3
958
Normal
-0.3
858
Normal
-0.3
436
Normal
-0.4
528
Normal
-0.4
284
Normal
-0.4
422
Normal
-0.4
344
Normal
-0.4
574
Normal
-0.4
412
Normal
-0.4
722
Normal
-0.4
428
Normal
-0.4
498
Normal
-0.4
814
Normal
-0.4
278
Normal
-0.4
192
Normal
-0.4
956
Normal
-0.4
627
Tumor
-0.4
698
Normal
-0.4
938
Normal
-0.4
137
Tumor
-0.4
882
Normal
-0.4
952
Normal
-0.4
982
Normal
-0.4
878
Normal
-0.4
434
Normal
-0.4
955
Tumor
-0.4
444
Normal
-0.4
314
Normal
-0.4
432
Normal
-0.4
128
Normal
-0.4
558
Normal
-0.4
332
Normal
-0.4
984
Normal
-0.4
616
Normal
-0.4
636
Normal
-0.4
474
Normal
-0.4
926
Normal
-0.4
918
Normal
-0.4
686
Normal
-0.4
466
Normal
-0.4
232
Normal
-0.4
944
Normal
-0.4
463
Tumor
-0.4
968
Normal
-0.4
924
Normal
-0.4
978
Normal
-0.4
456
Normal
-0.4
568
Normal
-0.4
188
Normal
-0.4
298
Normal
-0.4
922
Normal
-0.4
866
Normal
-0.4
141
Tumor
-0.4
1032
Normal
-0.4
196
Normal
-0.4
954
Normal
-0.4
394
Normal
-0.4
364
Normal
-0.5
628
Normal
-0.5
716
Normal
-0.5
1016
Normal
-0.5
426
Normal
-0.5
365
Tumor
-0.5
976
Normal
-0.5
388
Normal
-0.5
518
Normal
-0.5
286
Normal
-0.5
516
Normal
-0.5
465
Tumor
-0.5
738
Normal
-0.5
874
Normal
-0.5
824
Normal
-0.5
414
Normal
-0.5
142
Normal
-0.5
384
Normal
-0.5
818
Normal
-0.5
728
Normal
-0.5
744
Normal
-0.5
884
Normal
-0.5
914
Normal
-0.5
1042
Normal
-0.5
392
Normal
-0.5
481
Tumor
-0.5
396
Normal
-0.5
472
Normal
-0.5
416
Normal
-0.5
462
Normal
-0.5
618
Normal
-0.5
664
Normal
-0.5
746
Normal
-0.5
816
Normal
-0.5
916
Normal
-0.5
642
Normal
-0.5
756
Normal
-0.5
478
Normal
-0.5
1043
Tumor
-0.5
514
Normal
-0.5
424
Normal
-0.5
852
Normal
-0.5
1022
Normal
-0.5
526
Normal
-0.5
214
Normal
-0.5
368
Normal
-0.5
366
Normal
-0.6
1044
Normal
-0.6
723
Tumor
-0.6
1046
Normal
-0.6
362
Normal
-0.6
778
Normal
-0.6
464
Normal
-0.6
666
Normal
-0.6
742
Normal
-0.6
482
Normal
-0.6
868
Normal
-0.6
786
Normal
-0.6
312
Normal
-0.6
383
Tumor
-0.6
136
Normal
-0.6
356
Normal
-0.6
268
Normal
-0.7
648
Normal
-0.7
672
Normal
-0.7
146
Normal
-0.7
138
Normal
-0.7
862
Normal
-0.7
258
Normal
-0.7
132
Normal
-0.7
386
Normal
-0.7
662
Normal
-0.7
272
Normal
-0.7
262
Normal
-0.7
126
Normal
-0.7
114
Normal
-0.8
452
Normal
-0.8
111
Normal
-0.8
468
Normal
-0.8
124
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
