MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.7 nTPM
HPA Brain:23.2 nTPM
GTEx:78.7 nTPM
FANTOM5:137.4 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:79.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
2019 Male, age 18, unknown 24.9
1870 Female, age 42, unknown 22.8
1827 Male, age 72, unknown 21.1
2828 Female, age 72, unknown 20.4
2411 Female, age 72, unknown 20.1
2586 Male, age 75, left hemisphere 18.5
2666 Male, age 74, left hemisphere 17.4
1833 Male, age 53, unknown 17.1
1830 Male, age 51, unknown 17.0
2219 Male, age 76, both hemispheres 12.6
Dorsal raphe nucleus
nTPM: 23.2
2298 Female, age 72, unknown 28.9
1828 Male, age 53, unknown 23.8
2016 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 21.7
2750 Male, age 76, both hemispheres 19.3
Inferior colliculus
nTPM: 21.9
2097 Female, age 72, unknown 26.6
1890 Male, age 53, unknown 23.2
1848 Female, age 42, unknown 20.6
2849 Male, age 72, unknown 17.3
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 19.5
1947 Male, age 18, unknown 21.1
2502 Female, age 75, unknown 19.1
1795 Male, age 51, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 18.6
1840 Male, age 53, unknown 19.9
1831 Male, age 72, unknown 19.1
2850 Male, age 76, both hemispheres 18.7
2464 Female, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 18.5
2272 Male, age 74, both hemispheres 18.8
2140 Male, age 76, both hemispheres 18.5
2053 Male, age 18, unknown 18.2
Pretectal area
nTPM: 21.1
2007 Male, age 72, unknown 24.1
2273 Male, age 74, both hemispheres 23.5
1817 Female, age 42, unknown 23.3
2224 Female, age 72, unknown 22.8
1816 Male, age 51, unknown 22.3
1944 Female, age 72, unknown 21.8
2667 Female, age 75, unknown 21.1
1815 Male, age 53, unknown 20.3
2316 Male, age 76, right hemisphere 19.6
2407 Male, age 75, both hemispheres 16.6
2825 Male, age 18, unknown 16.5
Red nucleus
nTPM: 20.1
1821 Female, age 72, unknown 24.4
2785 Male, age 18, unknown 23.0
2725 Female, age 75, unknown 22.3
2503 Female, age 72, unknown 21.9
2823 Male, age 76, right hemisphere 21.5
1865 Male, age 51, unknown 20.7
1904 Male, age 53, unknown 19.7
1954 Female, age 42, unknown 19.6
2227 Male, age 72, unknown 19.5
2769 Male, age 72, unknown 18.6
2584 Male, age 75, left hemisphere 15.1
2588 Male, age 74, left hemisphere 14.6
Substantia nigra
nTPM: 17.4
1889 Female, age 72, unknown 21.5
2241 Male, age 72, unknown 18.9
1851 Male, age 51, unknown 18.3
1916 Female, age 42, unknown 17.9
2590 Female, age 75, unknown 17.0
2583 Male, age 75, right hemisphere 16.7
2665 Male, age 74, both hemispheres 16.6
1941 Male, age 53, unknown 16.5
2409 Female, age 72, unknown 15.5
2699 Male, age 18, unknown 15.3
Superior colliculus
nTPM: 19.2
1895 Male, age 76, right hemisphere 21.2
2587 Male, age 74, left hemisphere 20.5
1913 Female, age 42, unknown 20.3
1796 Male, age 53, unknown 20.1
1839 Male, age 51, unknown 19.3
1995 Male, age 72, unknown 19.3
2664 Male, age 75, both hemispheres 18.6
2087 Female, age 72, unknown 18.3
2668 Female, age 75, unknown 17.5
2261 Male, age 18, unknown 16.7
Ventral tegmental area
nTPM: 17.6
2410 Female, age 72, unknown 18.7
1915 Female, age 42, unknown 18.4
1942 Male, age 51, unknown 17.8
2218 Male, age 76, both hemispheres 17.7
2021 Male, age 53, unknown 17.1
2223 Female, age 72, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 78.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.7
Samples: 139

Max nTPM: 131.5
Min nTPM: 41.1
Std nTPM: 16.7
Median nTPM: 77.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 131.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 122.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 113.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 113.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 112.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 110.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 110.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 108.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 104.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.4
FF:10158-103A5 76 years, female 137.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 23.0
Min nTPM: 20.5
Sample A Female 21.2
Sample B Female 20.5
Sample C Male 22.7
Sample D Male 23.0
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.0
Min nTPM: 21.7
Sample A Female 23.1
Sample B Female 24.0
Sample C Male 22.5
Sample D Male 21.7
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 24.4
Min nTPM: 22.5
Sample B Female 22.5
Sample C Male 24.4
Sample D Male 23.0
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.5
Sample A Female 21.8
Sample B Female 20.5
Sample C Male 24.1
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 84.4
Min nTPM: 75.1
Sample A Male 82.3
Sample B Male 77.8
Sample C Female 75.1
Sample D Female 84.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68151363 Antisense, RP_041116_01_A08, Mouse strain C57BL/6J (56 days, male) 0.3

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