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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RWDD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
59.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
59.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
54.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
46.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
43.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
41.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
39.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
36.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RWDD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.0
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
108.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
76.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
75.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
67.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
65.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
63.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
63.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
62.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
54.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
49.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
47.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
47.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
43.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
43.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
36.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.6
227
Tumor
1.1
663
Tumor
1.1
865
Tumor
1.0
411
Tumor
0.9
473
Tumor
0.9
737
Tumor
0.9
777
Tumor
0.9
967
Tumor
0.8
981
Tumor
0.8
353
Tumor
0.7
147
Tumor
0.7
355
Tumor
0.7
915
Tumor
0.7
363
Tumor
0.7
313
Tumor
0.7
527
Tumor
0.6
943
Tumor
0.6
916
Normal
0.6
957
Tumor
0.6
537
Tumor
0.6
965
Tumor
0.5
137
Tumor
0.5
697
Tumor
0.5
963
Tumor
0.5
923
Tumor
0.5
277
Tumor
0.5
477
Tumor
0.5
955
Tumor
0.5
925
Tumor
0.5
1021
Tumor
0.5
724
Normal
0.4
223
Tumor
0.4
727
Tumor
0.4
431
Tumor
0.4
951
Tumor
0.4
497
Tumor
0.4
571
Tumor
0.4
221
Tumor
0.4
131
Tumor
0.4
285
Tumor
0.4
1031
Tumor
0.4
713
Tumor
0.4
721
Tumor
0.4
873
Tumor
0.4
924
Normal
0.4
883
Tumor
0.4
937
Tumor
0.4
1043
Tumor
0.4
741
Tumor
0.4
525
Tumor
0.3
341
Tumor
0.3
211
Tumor
0.3
617
Tumor
0.3
1044
Normal
0.3
415
Tumor
0.3
498
Normal
0.3
745
Tumor
0.3
1015
Tumor
0.3
533
Tumor
0.3
546
Normal
0.3
917
Tumor
0.2
1014
Normal
0.2
983
Tumor
0.2
978
Normal
0.2
695
Tumor
0.2
953
Tumor
0.2
861
Tumor
0.2
212
Normal
0.2
696
Normal
0.2
984
Normal
0.2
686
Normal
0.2
538
Normal
0.2
975
Tumor
0.2
523
Tumor
0.2
867
Tumor
0.2
922
Normal
0.2
284
Normal
0.2
1046
Normal
0.2
327
Tumor
0.2
553
Tumor
0.2
1027
Tumor
0.2
977
Tumor
0.2
435
Tumor
0.2
755
Tumor
0.2
918
Normal
0.2
413
Tumor
0.2
815
Tumor
0.1
364
Normal
0.1
647
Tumor
0.1
515
Tumor
0.1
228
Normal
0.1
954
Normal
0.1
851
Tumor
0.1
478
Normal
0.1
563
Tumor
0.1
112
Tumor
0.1
483
Tumor
0.1
716
Normal
0.1
513
Tumor
0.1
881
Tumor
0.1
516
Normal
0.1
982
Normal
0.1
743
Tumor
0.1
641
Tumor
0.1
283
Tumor
0.1
135
Tumor
0.1
261
Tumor
0.1
742
Normal
0.1
1045
Tumor
0.1
447
Tumor
0.1
818
Normal
0.1
271
Tumor
0.1
722
Normal
0.1
224
Normal
0.1
778
Normal
0.1
471
Tumor
0.1
966
Normal
0.1
1028
Normal
0.0
567
Tumor
0.0
926
Normal
0.0
852
Normal
0.0
944
Normal
0.0
123
Tumor
0.0
524
Normal
0.0
976
Normal
0.0
958
Normal
0.0
421
Tumor
0.0
814
Normal
0.0
914
Normal
0.0
744
Normal
0.0
698
Normal
0.0
572
Normal
0.0
863
Tumor
0.0
723
Tumor
0.0
387
Tumor
0.0
487
Tumor
0.0
864
Normal
0.0
956
Normal
0.0
488
Normal
0.0
443
Tumor
0.0
913
Tumor
0.0
1022
Normal
0.0
813
Tumor
0.0
862
Normal
0.0
878
Normal
0.0
267
Tumor
0.0
311
Tumor
0.0
113
Tumor
0.0
492
Normal
0.0
786
Normal
0.0
514
Normal
0.0
423
Tumor
0.0
444
Normal
0.0
356
Normal
0.0
494
Normal
0.0
448
Normal
0.0
536
Normal
0.0
1026
Normal
0.0
272
Normal
-0.1
817
Tumor
-0.1
416
Normal
-0.1
185
Tumor
-0.1
455
Tumor
-0.1
425
Tumor
-0.1
412
Normal
-0.1
484
Normal
-0.1
756
Normal
-0.1
911
Tumor
-0.1
395
Tumor
-0.1
414
Normal
-0.1
461
Tumor
-0.1
921
Tumor
-0.1
534
Normal
-0.1
526
Normal
-0.1
1032
Normal
-0.1
661
Tumor
-0.1
636
Normal
-0.1
823
Tumor
-0.1
465
Tumor
-0.1
427
Tumor
-0.1
528
Normal
-0.1
666
Normal
-0.1
286
Normal
-0.1
217
Tumor
-0.1
685
Tumor
-0.1
493
Tumor
-0.1
568
Normal
-0.1
145
Tumor
-0.1
912
Normal
-0.1
231
Tumor
-0.1
474
Normal
-0.1
351
Tumor
-0.1
938
Normal
-0.1
1042
Normal
-0.1
357
Tumor
-0.1
558
Normal
-0.1
964
Normal
-0.1
874
Normal
-0.1
268
Normal
-0.1
714
Normal
-0.1
824
Normal
-0.1
968
Normal
-0.1
554
Normal
-0.1
1016
Normal
-0.1
451
Tumor
-0.1
517
Tumor
-0.1
738
Normal
-0.1
616
Normal
-0.2
545
Tumor
-0.2
866
Normal
-0.2
352
Normal
-0.2
332
Normal
-0.2
816
Normal
-0.2
952
Normal
-0.2
868
Normal
-0.2
391
Tumor
-0.2
365
Tumor
-0.2
128
Normal
-0.2
328
Normal
-0.2
375
Tumor
-0.2
388
Normal
-0.2
728
Normal
-0.2
384
Normal
-0.2
386
Normal
-0.2
367
Tumor
-0.2
331
Tumor
-0.2
424
Normal
-0.2
362
Normal
-0.2
187
Tumor
-0.2
482
Normal
-0.2
662
Normal
-0.2
491
Tumor
-0.2
383
Tumor
-0.2
146
Normal
-0.2
573
Tumor
-0.2
535
Tumor
-0.2
746
Normal
-0.2
426
Normal
-0.2
142
Normal
-0.2
672
Normal
-0.2
422
Normal
-0.3
472
Normal
-0.3
882
Normal
-0.3
884
Normal
-0.3
354
Normal
-0.3
462
Normal
-0.3
468
Normal
-0.3
361
Tumor
-0.3
463
Tumor
-0.3
368
Normal
-0.3
428
Normal
-0.3
392
Normal
-0.3
358
Normal
-0.3
376
Normal
-0.3
196
Normal
-0.3
432
Normal
-0.3
857
Tumor
-0.3
628
Normal
-0.3
342
Normal
-0.3
665
Tumor
-0.3
445
Tumor
-0.3
344
Normal
-0.3
858
Normal
-0.3
192
Normal
-0.3
456
Normal
-0.3
434
Normal
-0.4
481
Tumor
-0.4
262
Normal
-0.4
188
Normal
-0.4
466
Normal
-0.4
877
Tumor
-0.4
126
Normal
-0.4
195
Tumor
-0.4
124
Normal
-0.4
297
Tumor
-0.4
218
Normal
-0.4
518
Normal
-0.4
467
Tumor
-0.4
452
Normal
-0.4
191
Tumor
-0.4
312
Normal
-0.4
114
Normal
-0.4
125
Tumor
-0.4
715
Tumor
-0.4
394
Normal
-0.4
232
Normal
-0.4
464
Normal
-0.4
385
Tumor
-0.4
111
Normal
-0.4
298
Normal
-0.4
1025
Tumor
-0.4
258
Normal
-0.4
366
Normal
-0.4
642
Normal
-0.5
635
Tumor
-0.5
627
Tumor
-0.5
141
Tumor
-0.5
186
Normal
-0.5
446
Normal
-0.5
664
Normal
-0.5
557
Tumor
-0.5
138
Normal
-0.5
433
Tumor
-0.5
618
Normal
-0.5
785
Tumor
-0.5
1041
Tumor
-0.5
574
Normal
-0.5
314
Normal
-0.5
278
Normal
-0.5
564
Normal
-0.6
436
Normal
-0.6
214
Normal
-0.6
161
Tumor
-0.6
648
Normal
-0.6
132
Normal
-0.6
136
Normal
-0.6
148
Normal
-0.6
343
Tumor
-0.6
396
Normal
-0.6
257
Tumor
-0.6
162
Normal
-0.7
213
Tumor
-0.7
172
Normal
-0.7
171
Tumor
-0.7
127
Tumor
-0.8
222
Normal
-0.8
671
Tumor
-0.8
393
Tumor
-0.9
615
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
