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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF9 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
291.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
253.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
233.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
201.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
194.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
190.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
188.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
179.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
179.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
170.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
169.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
168.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
163.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
159.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
157.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
155.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
154.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
152.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
150.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
147.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
146.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
144.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
139.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
135.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
135.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
135.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
134.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
133.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
131.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
130.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
127.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
126.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
125.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
124.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
124.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
123.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
121.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
121.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
118.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
116.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
115.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
112.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
112.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
110.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
110.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
108.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
108.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
106.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
105.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
105.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
105.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
104.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
104.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
101.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
101.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
100.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
100.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
100.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
100.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
98.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
96.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
96.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
96.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
95.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
95.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
94.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
94.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
94.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
94.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
94.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
94.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
93.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
93.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
93.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
91.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
91.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
90.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
89.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
89.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
89.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
89.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
89.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
89.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
89.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
89.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
88.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
88.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
88.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
88.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
87.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
87.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
86.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
86.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
86.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
86.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
86.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
85.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
85.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
84.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
83.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
83.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
83.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
82.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
82.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
82.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
82.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
81.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
81.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
81.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
81.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
80.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
80.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
80.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
80.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
80.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
80.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
79.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
78.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
78.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
78.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
78.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
78.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
77.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
77.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
77.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
77.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
77.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
77.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
76.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
76.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
75.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
75.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
73.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
73.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
72.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
72.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
71.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
71.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
71.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
70.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
70.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
70.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
70.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
70.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
69.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
69.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
69.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
68.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
68.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
68.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
67.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
67.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
67.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
67.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
66.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
65.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
65.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
65.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
65.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
64.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
64.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
64.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
64.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
64.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
63.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
63.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
62.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
61.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
61.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
61.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
61.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
61.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
61.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
61.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
60.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
60.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
60.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
60.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
59.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
59.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
59.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
58.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
58.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
58.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
57.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
57.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
57.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
57.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
55.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
55.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
55.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
53.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
52.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
52.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
52.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
51.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
51.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
50.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
50.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
50.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
50.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
49.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
48.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
48.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
47.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
47.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
47.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
47.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
46.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
46.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
45.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
45.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
45.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
44.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
43.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
42.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
37.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF9 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.2
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
193.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
187.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
180.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
172.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
163.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
160.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
151.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
142.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
140.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
136.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
136.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
135.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
131.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
131.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
128.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
126.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
123.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
123.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
119.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
118.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
118.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
115.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
113.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
110.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
109.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
108.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
107.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
107.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
106.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
104.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
103.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
102.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
101.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
101.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
101.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
101.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
100.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
99.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
99.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
97.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
94.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
93.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
93.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
92.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
91.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
90.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
89.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
89.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
88.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
88.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
86.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
86.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
86.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
86.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
86.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
85.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
83.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
82.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
81.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
81.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
81.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
81.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
81.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
80.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
80.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
79.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
78.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
78.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
77.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
77.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
76.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
74.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
73.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
73.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
73.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
73.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
73.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
72.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
71.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
71.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
69.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
69.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
69.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
68.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
68.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
68.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
67.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
66.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
66.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
66.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
65.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
64.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
64.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
63.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
63.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
61.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
61.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
60.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
60.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
59.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
58.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
57.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
57.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
57.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
56.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
56.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
56.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
55.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
55.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
55.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
54.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
54.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
54.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
53.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
52.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
52.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
50.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
50.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
49.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
47.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
45.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
44.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
43.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
43.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
42.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.7
661
Tumor
1.3
497
Tumor
1.3
967
Tumor
1.2
351
Tumor
1.1
355
Tumor
1.1
965
Tumor
1.1
983
Tumor
1.1
743
Tumor
1.1
425
Tumor
1.0
647
Tumor
1.0
463
Tumor
1.0
331
Tumor
1.0
815
Tumor
0.9
1013
Tumor
0.9
285
Tumor
0.9
921
Tumor
0.9
777
Tumor
0.9
385
Tumor
0.8
535
Tumor
0.8
877
Tumor
0.8
545
Tumor
0.8
635
Tumor
0.8
951
Tumor
0.8
1031
Tumor
0.7
517
Tumor
0.7
937
Tumor
0.7
123
Tumor
0.7
411
Tumor
0.7
413
Tumor
0.7
131
Tumor
0.7
1025
Tumor
0.7
391
Tumor
0.7
671
Tumor
0.6
663
Tumor
0.6
537
Tumor
0.6
923
Tumor
0.6
363
Tumor
0.6
313
Tumor
0.6
785
Tumor
0.6
443
Tumor
0.6
221
Tumor
0.6
865
Tumor
0.6
695
Tumor
0.6
277
Tumor
0.6
387
Tumor
0.5
367
Tumor
0.5
925
Tumor
0.5
943
Tumor
0.5
112
Tumor
0.5
571
Tumor
0.5
487
Tumor
0.5
125
Tumor
0.5
375
Tumor
0.5
483
Tumor
0.4
283
Tumor
0.4
553
Tumor
0.4
227
Tumor
0.4
573
Tumor
0.4
737
Tumor
0.4
883
Tumor
0.4
467
Tumor
0.4
977
Tumor
0.4
724
Normal
0.3
473
Tumor
0.3
817
Tumor
0.3
161
Tumor
0.3
851
Tumor
0.3
447
Tumor
0.3
755
Tumor
0.3
211
Tumor
0.3
975
Tumor
0.3
493
Tumor
0.3
917
Tumor
0.3
523
Tumor
0.3
515
Tumor
0.3
433
Tumor
0.3
271
Tumor
0.2
641
Tumor
0.2
311
Tumor
0.2
267
Tumor
0.2
1021
Tumor
0.2
343
Tumor
0.2
147
Tumor
0.2
213
Tumor
0.2
881
Tumor
0.2
533
Tumor
0.2
527
Tumor
0.2
341
Tumor
0.2
217
Tumor
0.2
1043
Tumor
0.2
873
Tumor
0.2
135
Tumor
0.1
513
Tumor
0.1
1015
Tumor
0.1
455
Tumor
0.1
471
Tumor
0.1
431
Tumor
0.1
1045
Tumor
0.1
257
Tumor
0.1
297
Tumor
0.1
727
Tumor
0.1
491
Tumor
0.1
465
Tumor
0.1
741
Tumor
0.1
383
Tumor
0.1
953
Tumor
0.1
536
Normal
0.1
113
Tumor
0.1
327
Tumor
0.0
357
Tumor
0.0
185
Tumor
0.0
861
Tumor
0.0
141
Tumor
0.0
715
Tumor
0.0
617
Tumor
0.0
492
Normal
0.0
615
Tumor
0.0
823
Tumor
0.0
435
Tumor
0.0
516
Normal
0.0
137
Tumor
0.0
415
Tumor
0.0
563
Tumor
0.0
913
Tumor
-0.1
127
Tumor
-0.1
353
Tumor
-0.1
314
Normal
-0.1
171
Tumor
-0.1
393
Tumor
-0.1
721
Tumor
-0.1
665
Tumor
-0.1
312
Normal
-0.1
332
Normal
-0.1
813
Tumor
-0.1
298
Normal
-0.1
857
Tumor
-0.1
261
Tumor
-0.1
423
Tumor
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
1014
Normal
-0.1
546
Normal
-0.1
498
Normal
-0.1
814
Normal
-0.1
911
Tumor
-0.1
525
Tumor
-0.1
1041
Tumor
-0.1
538
Normal
-0.1
966
Normal
-0.1
187
Tumor
-0.1
554
Normal
-0.1
557
Tumor
-0.1
524
Normal
-0.1
481
Tumor
-0.1
958
Normal
-0.1
686
Normal
-0.1
352
Normal
-0.1
284
Normal
-0.1
981
Tumor
-0.1
984
Normal
-0.1
878
Normal
-0.1
685
Tumor
-0.1
361
Tumor
-0.1
627
Tumor
-0.1
1026
Normal
-0.2
915
Tumor
-0.2
696
Normal
-0.2
912
Normal
-0.2
924
Normal
-0.2
567
Tumor
-0.2
145
Tumor
-0.2
916
Normal
-0.2
728
Normal
-0.2
224
Normal
-0.2
528
Normal
-0.2
954
Normal
-0.2
716
Normal
-0.2
484
Normal
-0.2
534
Normal
-0.2
968
Normal
-0.2
867
Tumor
-0.2
964
Normal
-0.2
938
Normal
-0.2
574
Normal
-0.2
874
Normal
-0.2
978
Normal
-0.2
636
Normal
-0.2
451
Tumor
-0.2
714
Normal
-0.2
412
Normal
-0.2
1046
Normal
-0.2
278
Normal
-0.2
1044
Normal
-0.2
342
Normal
-0.2
558
Normal
-0.2
882
Normal
-0.2
723
Tumor
-0.2
478
Normal
-0.2
223
Tumor
-0.2
514
Normal
-0.2
212
Normal
-0.2
852
Normal
-0.2
628
Normal
-0.2
744
Normal
-0.2
1022
Normal
-0.2
518
Normal
-0.2
698
Normal
-0.2
572
Normal
-0.2
616
Normal
-0.2
868
Normal
-0.2
448
Normal
-0.3
142
Normal
-0.3
427
Tumor
-0.3
568
Normal
-0.3
824
Normal
-0.3
526
Normal
-0.3
1028
Normal
-0.3
918
Normal
-0.3
124
Normal
-0.3
713
Tumor
-0.3
862
Normal
-0.3
756
Normal
-0.3
444
Normal
-0.3
1016
Normal
-0.3
356
Normal
-0.3
344
Normal
-0.3
468
Normal
-0.3
963
Tumor
-0.3
738
Normal
-0.3
354
Normal
-0.3
944
Normal
-0.3
952
Normal
-0.3
922
Normal
-0.3
982
Normal
-0.3
195
Tumor
-0.3
445
Tumor
-0.3
697
Tumor
-0.3
666
Normal
-0.3
494
Normal
-0.3
488
Normal
-0.3
128
Normal
-0.3
192
Normal
-0.3
746
Normal
-0.3
955
Tumor
-0.3
926
Normal
-0.3
416
Normal
-0.3
866
Normal
-0.3
466
Normal
-0.3
388
Normal
-0.3
114
Normal
-0.3
662
Normal
-0.3
664
Normal
-0.3
884
Normal
-0.3
648
Normal
-0.3
976
Normal
-0.3
1042
Normal
-0.3
618
Normal
-0.3
863
Tumor
-0.3
376
Normal
-0.3
742
Normal
-0.3
231
Tumor
-0.3
778
Normal
-0.3
858
Normal
-0.3
268
Normal
-0.3
258
Normal
-0.3
672
Normal
-0.3
191
Tumor
-0.3
421
Tumor
-0.3
228
Normal
-0.3
472
Normal
-0.3
262
Normal
-0.3
364
Normal
-0.4
148
Normal
-0.4
474
Normal
-0.4
1032
Normal
-0.4
386
Normal
-0.4
477
Tumor
-0.4
395
Tumor
-0.4
956
Normal
-0.4
111
Normal
-0.4
816
Normal
-0.4
186
Normal
-0.4
786
Normal
-0.4
136
Normal
-0.4
745
Tumor
-0.4
328
Normal
-0.4
188
Normal
-0.4
396
Normal
-0.4
482
Normal
-0.4
462
Normal
-0.4
564
Normal
-0.4
434
Normal
-0.4
394
Normal
-0.4
384
Normal
-0.4
392
Normal
-0.4
362
Normal
-0.4
818
Normal
-0.4
218
Normal
-0.4
232
Normal
-0.4
126
Normal
-0.4
214
Normal
-0.4
196
Normal
-0.4
722
Normal
-0.4
272
Normal
-0.4
138
Normal
-0.4
456
Normal
-0.4
1027
Tumor
-0.4
436
Normal
-0.4
642
Normal
-0.4
464
Normal
-0.4
286
Normal
-0.4
358
Normal
-0.5
914
Normal
-0.5
366
Normal
-0.5
864
Normal
-0.5
452
Normal
-0.5
146
Normal
-0.5
424
Normal
-0.5
426
Normal
-0.5
222
Normal
-0.5
132
Normal
-0.6
172
Normal
-0.6
414
Normal
-0.6
368
Normal
-0.6
162
Normal
-0.6
446
Normal
-0.6
422
Normal
-0.6
432
Normal
-0.7
428
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
