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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB35 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
42.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB35 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
0.8
573
Tumor
0.5
713
Tumor
0.5
1013
Tumor
0.4
851
Tumor
0.4
147
Tumor
0.4
1031
Tumor
0.4
724
Normal
0.4
536
Normal
0.4
447
Tumor
0.4
491
Tumor
0.3
967
Tumor
0.3
537
Tumor
0.3
211
Tumor
0.3
125
Tumor
0.3
1025
Tumor
0.3
283
Tumor
0.3
343
Tumor
0.3
965
Tumor
0.3
227
Tumor
0.3
755
Tumor
0.3
517
Tumor
0.3
523
Tumor
0.3
327
Tumor
0.3
535
Tumor
0.3
983
Tumor
0.3
917
Tumor
0.3
223
Tumor
0.3
984
Normal
0.2
958
Normal
0.2
815
Tumor
0.2
1014
Normal
0.2
492
Normal
0.2
311
Tumor
0.2
877
Tumor
0.2
715
Tumor
0.2
1044
Normal
0.2
778
Normal
0.2
861
Tumor
0.2
145
Tumor
0.2
524
Normal
0.2
425
Tumor
0.2
966
Normal
0.2
923
Tumor
0.2
978
Normal
0.2
953
Tumor
0.2
937
Tumor
0.2
538
Normal
0.2
968
Normal
0.2
285
Tumor
0.2
916
Normal
0.2
1028
Normal
0.2
685
Tumor
0.2
351
Tumor
0.2
363
Tumor
0.2
487
Tumor
0.2
1032
Normal
0.2
661
Tumor
0.2
478
Normal
0.2
525
Tumor
0.2
867
Tumor
0.2
545
Tumor
0.2
721
Tumor
0.2
257
Tumor
0.2
964
Normal
0.2
415
Tumor
0.2
921
Tumor
0.2
952
Normal
0.2
494
Normal
0.2
224
Normal
0.2
171
Tumor
0.1
954
Normal
0.1
212
Normal
0.1
131
Tumor
0.1
824
Normal
0.1
823
Tumor
0.1
912
Normal
0.1
493
Tumor
0.1
981
Tumor
0.1
686
Normal
0.1
488
Normal
0.1
435
Tumor
0.1
617
Tumor
0.1
868
Normal
0.1
553
Tumor
0.1
817
Tumor
0.1
944
Normal
0.1
925
Tumor
0.1
1026
Normal
0.1
716
Normal
0.1
943
Tumor
0.1
696
Normal
0.1
384
Normal
0.1
411
Tumor
0.1
884
Normal
0.1
926
Normal
0.1
518
Normal
0.1
135
Tumor
0.1
557
Tumor
0.1
385
Tumor
0.1
185
Tumor
0.1
368
Normal
0.1
328
Normal
0.1
533
Tumor
0.1
355
Tumor
0.1
455
Tumor
0.1
558
Normal
0.1
217
Tumor
0.1
498
Normal
0.1
513
Tumor
0.1
915
Tumor
0.1
866
Normal
0.1
1042
Normal
0.1
977
Tumor
0.1
1043
Tumor
0.1
816
Normal
0.1
1046
Normal
0.1
938
Normal
0.1
697
Tumor
0.1
514
Normal
0.1
635
Tumor
0.1
818
Normal
0.1
1027
Tumor
0.1
284
Normal
0.1
528
Normal
0.1
484
Normal
0.1
421
Tumor
0.1
526
Normal
0.1
352
Normal
0.1
471
Tumor
0.1
416
Normal
0.1
864
Normal
0.1
1022
Normal
0.1
911
Tumor
0.1
412
Normal
0.0
785
Tumor
0.0
497
Tumor
0.0
286
Normal
0.0
813
Tumor
0.0
146
Normal
0.0
862
Normal
0.0
395
Tumor
0.0
1015
Tumor
0.0
364
Normal
0.0
434
Normal
0.0
356
Normal
0.0
647
Tumor
0.0
665
Tumor
0.0
567
Tumor
0.0
975
Tumor
0.0
213
Tumor
0.0
341
Tumor
0.0
956
Normal
0.0
313
Tumor
0.0
431
Tumor
0.0
982
Normal
0.0
448
Normal
0.0
955
Tumor
0.0
546
Normal
0.0
714
Normal
0.0
391
Tumor
0.0
344
Normal
0.0
424
Normal
0.0
963
Tumor
0.0
728
Normal
0.0
188
Normal
0.0
126
Normal
0.0
857
Tumor
0.0
878
Normal
0.0
516
Normal
0.0
852
Normal
0.0
1016
Normal
0.0
444
Normal
0.0
914
Normal
0.0
874
Normal
0.0
563
Tumor
0.0
413
Tumor
0.0
922
Normal
0.0
881
Tumor
0.0
192
Normal
0.0
187
Tumor
0.0
113
Tumor
0.0
924
Normal
0.0
554
Normal
0.0
414
Normal
0.0
228
Normal
0.0
467
Tumor
0.0
882
Normal
0.0
361
Tumor
0.0
671
Tumor
0.0
262
Normal
0.0
191
Tumor
0.0
976
Normal
0.0
628
Normal
0.0
722
Normal
0.0
376
Normal
0.0
756
Normal
0.0
362
Normal
0.0
572
Normal
0.0
571
Tumor
0.0
433
Tumor
0.0
951
Tumor
0.0
746
Normal
0.0
481
Tumor
0.0
218
Normal
0.0
358
Normal
0.0
472
Normal
0.0
483
Tumor
0.0
777
Tumor
0.0
723
Tumor
0.0
534
Normal
0.0
616
Normal
0.0
422
Normal
0.0
271
Tumor
0.0
462
Normal
0.0
142
Normal
0.0
738
Normal
0.0
672
Normal
0.0
515
Tumor
0.0
664
Normal
0.0
641
Tumor
0.0
918
Normal
0.0
636
Normal
0.0
432
Normal
0.0
698
Normal
-0.1
466
Normal
-0.1
873
Tumor
-0.1
124
Normal
-0.1
648
Normal
-0.1
642
Normal
-0.1
568
Normal
-0.1
786
Normal
-0.1
162
Normal
-0.1
1045
Tumor
-0.1
865
Tumor
-0.1
111
Normal
-0.1
353
Tumor
-0.1
332
Normal
-0.1
148
Normal
-0.1
392
Normal
-0.1
913
Tumor
-0.1
186
Normal
-0.1
426
Normal
-0.1
858
Normal
-0.1
366
Normal
-0.1
814
Normal
-0.1
383
Tumor
-0.1
312
Normal
-0.1
461
Tumor
-0.1
574
Normal
-0.1
161
Tumor
-0.1
297
Tumor
-0.1
427
Tumor
-0.1
451
Tumor
-0.1
618
Normal
-0.1
662
Normal
-0.1
354
Normal
-0.1
564
Normal
-0.1
375
Tumor
-0.1
627
Tumor
-0.1
138
Normal
-0.1
443
Tumor
-0.1
744
Normal
-0.1
482
Normal
-0.1
695
Tumor
-0.1
742
Normal
-0.1
666
Normal
-0.1
314
Normal
-0.1
127
Tumor
-0.1
474
Normal
-0.1
745
Tumor
-0.1
272
Normal
-0.1
386
Normal
-0.1
468
Normal
-0.1
456
Normal
-0.1
446
Normal
-0.1
342
Normal
-0.1
615
Tumor
-0.1
1021
Tumor
-0.1
195
Tumor
-0.1
863
Tumor
-0.1
278
Normal
-0.1
527
Tumor
-0.1
172
Normal
-0.1
463
Tumor
-0.1
436
Normal
-0.1
128
Normal
-0.1
141
Tumor
-0.1
396
Normal
-0.1
741
Tumor
-0.1
883
Tumor
-0.1
136
Normal
-0.1
221
Tumor
-0.1
196
Normal
-0.1
464
Normal
-0.1
473
Tumor
-0.1
114
Normal
-0.1
663
Tumor
-0.2
261
Tumor
-0.2
1041
Tumor
-0.2
428
Normal
-0.2
737
Tumor
-0.2
727
Tumor
-0.2
331
Tumor
-0.2
258
Normal
-0.2
112
Tumor
-0.2
394
Normal
-0.2
357
Tumor
-0.2
214
Normal
-0.2
365
Tumor
-0.2
268
Normal
-0.2
232
Normal
-0.2
388
Normal
-0.2
137
Tumor
-0.2
743
Tumor
-0.2
132
Normal
-0.2
123
Tumor
-0.2
367
Tumor
-0.2
298
Normal
-0.2
277
Tumor
-0.2
445
Tumor
-0.2
393
Tumor
-0.2
423
Tumor
-0.2
387
Tumor
-0.2
222
Normal
-0.2
452
Normal
-0.3
267
Tumor
-0.3
231
Tumor
-0.3
465
Tumor
-0.4
477
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
