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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKAB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKAB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.3
957
Tumor
1.0
127
Tumor
0.9
777
Tumor
0.8
695
Tumor
0.8
563
Tumor
0.7
911
Tumor
0.6
123
Tumor
0.6
955
Tumor
0.6
497
Tumor
0.5
341
Tumor
0.5
981
Tumor
0.5
1043
Tumor
0.5
815
Tumor
0.5
261
Tumor
0.4
983
Tumor
0.4
355
Tumor
0.4
171
Tumor
0.4
967
Tumor
0.4
311
Tumor
0.4
313
Tumor
0.4
147
Tumor
0.4
925
Tumor
0.4
965
Tumor
0.4
278
Normal
0.4
231
Tumor
0.4
141
Tumor
0.4
617
Tumor
0.3
283
Tumor
0.3
953
Tumor
0.3
742
Normal
0.3
375
Tumor
0.3
431
Tumor
0.3
112
Tumor
0.3
663
Tumor
0.3
465
Tumor
0.3
635
Tumor
0.3
745
Tumor
0.3
411
Tumor
0.3
1022
Normal
0.3
737
Tumor
0.3
351
Tumor
0.3
487
Tumor
0.3
362
Normal
0.3
938
Normal
0.2
298
Normal
0.2
425
Tumor
0.2
517
Tumor
0.2
128
Normal
0.2
285
Tumor
0.2
455
Tumor
0.2
861
Tumor
0.2
473
Tumor
0.2
376
Normal
0.2
284
Normal
0.2
746
Normal
0.2
1045
Tumor
0.2
416
Normal
0.2
741
Tumor
0.2
982
Normal
0.2
312
Normal
0.2
924
Normal
0.2
385
Tumor
0.2
493
Tumor
0.2
228
Normal
0.2
714
Normal
0.2
353
Tumor
0.2
126
Normal
0.2
368
Normal
0.2
257
Tumor
0.2
958
Normal
0.2
358
Normal
0.2
1032
Normal
0.2
952
Normal
0.2
365
Tumor
0.2
461
Tumor
0.2
1028
Normal
0.2
1044
Normal
0.1
1041
Tumor
0.1
738
Normal
0.1
1046
Normal
0.1
728
Normal
0.1
696
Normal
0.1
111
Normal
0.1
212
Normal
0.1
498
Normal
0.1
966
Normal
0.1
723
Tumor
0.1
474
Normal
0.1
978
Normal
0.1
391
Tumor
0.1
716
Normal
0.1
342
Normal
0.1
664
Normal
0.1
944
Normal
0.1
648
Normal
0.1
386
Normal
0.1
343
Tumor
0.1
433
Tumor
0.1
545
Tumor
0.1
114
Normal
0.1
956
Normal
0.1
915
Tumor
0.1
918
Normal
0.1
647
Tumor
0.1
778
Normal
0.1
482
Normal
0.1
923
Tumor
0.1
132
Normal
0.1
943
Tumor
0.1
462
Normal
0.1
662
Normal
0.1
436
Normal
0.1
286
Normal
0.1
161
Tumor
0.1
786
Normal
0.1
488
Normal
0.1
148
Normal
0.1
756
Normal
0.1
535
Tumor
0.1
573
Tumor
0.1
865
Tumor
0.1
472
Normal
0.1
528
Normal
0.1
546
Normal
0.1
977
Tumor
0.0
491
Tumor
0.0
366
Normal
0.0
136
Normal
0.0
558
Normal
0.0
314
Normal
0.0
976
Normal
0.0
354
Normal
0.0
867
Tumor
0.0
1042
Normal
0.0
394
Normal
0.0
484
Normal
0.0
162
Normal
0.0
534
Normal
0.0
868
Normal
0.0
515
Tumor
0.0
364
Normal
0.0
518
Normal
0.0
912
Normal
0.0
448
Normal
0.0
744
Normal
0.0
172
Normal
0.0
877
Tumor
0.0
536
Normal
0.0
481
Tumor
0.0
186
Normal
0.0
554
Normal
0.0
137
Tumor
0.0
188
Normal
0.0
494
Normal
0.0
222
Normal
0.0
344
Normal
0.0
272
Normal
0.0
412
Normal
0.0
384
Normal
0.0
426
Normal
0.0
125
Tumor
0.0
388
Normal
0.0
211
Tumor
0.0
921
Tumor
0.0
755
Tumor
0.0
1026
Normal
0.0
785
Tumor
0.0
721
Tumor
0.0
1015
Tumor
0.0
138
Normal
0.0
142
Normal
0.0
492
Normal
0.0
421
Tumor
0.0
124
Normal
0.0
874
Normal
0.0
686
Normal
0.0
135
Tumor
0.0
232
Normal
-0.1
214
Normal
-0.1
851
Tumor
-0.1
964
Normal
-0.1
538
Normal
-0.1
444
Normal
-0.1
477
Tumor
-0.1
447
Tumor
-0.1
862
Normal
-0.1
954
Normal
-0.1
352
Normal
-0.1
968
Normal
-0.1
914
Normal
-0.1
478
Normal
-0.1
145
Tumor
-0.1
715
Tumor
-0.1
926
Normal
-0.1
258
Normal
-0.1
722
Normal
-0.1
816
Normal
-0.1
483
Tumor
-0.1
424
Normal
-0.1
414
Normal
-0.1
864
Normal
-0.1
468
Normal
-0.1
113
Tumor
-0.1
666
Normal
-0.1
858
Normal
-0.1
396
Normal
-0.1
916
Normal
-0.1
432
Normal
-0.1
224
Normal
-0.1
922
Normal
-0.1
537
Tumor
-0.1
466
Normal
-0.1
446
Normal
-0.1
361
Tumor
-0.1
393
Tumor
-0.1
672
Normal
-0.1
392
Normal
-0.1
524
Normal
-0.1
917
Tumor
-0.1
268
Normal
-0.1
332
Normal
-0.1
218
Normal
-0.1
516
Normal
-0.1
852
Normal
-0.1
213
Tumor
-0.1
698
Normal
-0.1
356
Normal
-0.1
422
Normal
-0.1
262
Normal
-0.1
878
Normal
-0.1
523
Tumor
-0.1
428
Normal
-0.2
984
Normal
-0.2
452
Normal
-0.2
463
Tumor
-0.2
187
Tumor
-0.2
628
Normal
-0.2
642
Normal
-0.2
327
Tumor
-0.2
434
Normal
-0.2
636
Normal
-0.2
866
Normal
-0.2
435
Tumor
-0.2
223
Tumor
-0.2
413
Tumor
-0.2
395
Tumor
-0.2
456
Normal
-0.2
883
Tumor
-0.2
423
Tumor
-0.2
146
Normal
-0.2
1027
Tumor
-0.2
574
Normal
-0.2
357
Tumor
-0.2
671
Tumor
-0.2
713
Tumor
-0.2
627
Tumor
-0.2
196
Normal
-0.2
328
Normal
-0.2
1016
Normal
-0.2
571
Tumor
-0.2
217
Tumor
-0.2
514
Normal
-0.2
451
Tumor
-0.2
824
Normal
-0.2
572
Normal
-0.2
661
Tumor
-0.2
443
Tumor
-0.2
1025
Tumor
-0.3
823
Tumor
-0.3
873
Tumor
-0.3
297
Tumor
-0.3
1014
Normal
-0.3
1031
Tumor
-0.3
415
Tumor
-0.3
913
Tumor
-0.3
526
Normal
-0.3
618
Normal
-0.3
818
Normal
-0.3
616
Normal
-0.3
685
Tumor
-0.3
884
Normal
-0.3
185
Tumor
-0.3
564
Normal
-0.3
191
Tumor
-0.3
615
Tumor
-0.3
267
Tumor
-0.3
882
Normal
-0.3
814
Normal
-0.3
568
Normal
-0.3
553
Tumor
-0.3
383
Tumor
-0.3
513
Tumor
-0.3
533
Tumor
-0.4
1021
Tumor
-0.4
277
Tumor
-0.4
975
Tumor
-0.4
937
Tumor
-0.4
131
Tumor
-0.4
221
Tumor
-0.4
525
Tumor
-0.4
192
Normal
-0.4
227
Tumor
-0.4
387
Tumor
-0.4
331
Tumor
-0.4
727
Tumor
-0.4
641
Tumor
-0.4
963
Tumor
-0.4
464
Normal
-0.4
857
Tumor
-0.4
471
Tumor
-0.4
195
Tumor
-0.4
863
Tumor
-0.4
467
Tumor
-0.5
363
Tumor
-0.5
557
Tumor
-0.5
743
Tumor
-0.5
813
Tumor
-0.5
724
Normal
-0.5
951
Tumor
-0.5
427
Tumor
-0.5
367
Tumor
-0.5
697
Tumor
-0.5
881
Tumor
-0.6
567
Tumor
-0.6
527
Tumor
-0.6
271
Tumor
-0.7
817
Tumor
-0.7
665
Tumor
-0.7
445
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
